Wall clock time and date at job start Mon Mar 30 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37338 * 118.74894 * 2 1 4 4 C 1.39768 * 120.89981 * 180.02562 * 3 2 1 5 5 C 1.46270 * 120.46709 * 180.02562 * 4 3 2 6 6 O 1.21390 * 119.99742 * 185.04254 * 5 4 3 7 7 C 1.46456 * 119.06570 * 359.95556 * 4 3 2 8 8 C 1.39758 * 120.72947 * 180.02562 * 7 4 3 9 9 H 1.08004 * 119.99546 * 42.14697 * 8 7 4 10 10 C 1.40513 * 120.00482 * 222.15191 * 8 7 4 11 11 N 1.30523 * 119.99499 * 17.40195 * 10 8 7 12 12 Si 1.86803 * 119.99936 * 197.41173 * 10 8 7 13 13 H 1.48502 * 109.47254 * 59.99855 * 12 10 8 14 14 H 1.48499 * 109.46827 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47095 * 299.99256 * 12 10 8 16 16 C 1.47870 * 118.55089 * 0.04154 * 7 4 3 17 17 C 1.39877 * 128.94464 * 179.97438 * 16 7 4 18 18 C 1.32811 * 115.80955 * 180.27405 * 17 16 7 19 19 S 1.75476 * 110.69288 * 359.59044 * 18 17 16 20 20 C 1.39864 * 118.75542 * 180.02562 * 2 1 3 21 21 H 1.09002 * 109.46970 * 269.97382 * 1 2 3 22 22 H 1.08997 * 109.47677 * 29.97844 * 1 2 3 23 23 H 1.09002 * 109.47342 * 149.97888 * 1 2 3 24 24 H 1.07997 * 119.54875 * 0.02739 * 3 2 1 25 25 H 1.08001 * 120.00015 * 5.03687 * 5 4 3 26 26 H 0.97006 * 119.99743 * 175.02967 * 11 10 8 27 27 H 1.08000 * 122.09597 * 359.97438 * 17 16 7 28 28 H 1.08000 * 124.65688 * 179.72590 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1676 1.2041 0.0000 4 6 3.5643 1.2565 -0.0005 5 6 4.2581 2.5442 0.0000 6 8 5.4678 2.5818 -0.0928 7 6 4.3233 0.0040 -0.0001 8 6 5.7208 0.0159 -0.0001 9 1 6.2549 0.7142 0.6274 10 6 6.4312 -0.8805 -0.8164 11 7 5.8284 -1.4779 -1.8081 12 14 8.2379 -1.2172 -0.4821 13 1 8.3925 -1.7770 0.8847 14 1 8.7519 -2.1925 -1.4770 15 1 9.0054 0.0496 -0.5880 16 6 3.5788 -1.2735 -0.0001 17 6 4.0760 -2.5810 -0.0002 18 6 3.1640 -3.5464 -0.0058 19 16 1.5449 -2.8700 0.0001 20 6 2.1799 -1.2262 -0.0005 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6000 2.1229 0.0004 25 1 3.6940 3.4615 0.0830 26 1 6.3345 -2.0404 -2.4151 27 1 5.1352 -2.7921 -0.0007 28 1 3.3881 -4.6029 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343439.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:49 Heat of formation + Delta-G solvation = -18.101560 kcal Electronic energy + Delta-G solvation = -15207.387069 eV Core-core repulsion = 12699.716188 eV Total energy + Delta-G solvation = -2507.670880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10764 -38.77131 -36.27110 -35.55243 -32.77507 -30.37778 -29.03180 -25.93528 -25.13375 -23.74579 -21.31084 -20.41981 -19.73967 -17.64839 -17.34471 -16.66273 -16.10088 -15.67756 -15.39256 -14.95571 -14.46439 -14.35565 -14.21791 -13.66439 -13.44319 -13.24572 -13.12590 -12.79744 -12.62031 -12.42747 -12.21429 -11.79837 -11.43880 -11.40053 -10.96285 -10.10955 -9.74410 -9.04033 -8.94999 -8.27703 -6.47689 0.01445 0.50339 0.95712 1.29811 1.32137 1.41287 1.42540 1.56865 2.10391 2.24494 2.58799 3.45665 3.87082 4.23119 4.39702 4.44154 4.70292 4.82769 4.89028 4.97234 4.98944 5.04132 5.24069 5.31365 5.41757 5.48226 5.80828 5.89794 6.01632 6.16720 6.37674 6.59078 6.78252 7.22483 8.04633 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.011552 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.381810 B = 2423.171107 C = 3629.213822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.214 4.214 3 C 0.000 4.000 4 C -0.359 4.359 5 C 0.374 3.626 6 O -0.531 6.531 7 C 0.160 3.840 8 C -0.426 4.426 9 H 0.089 0.911 10 C 0.042 3.958 11 N -0.780 5.780 12 Si 0.974 3.026 13 H -0.252 1.252 14 H -0.256 1.256 15 H -0.265 1.265 16 C -0.164 4.164 17 C -0.061 4.061 18 C -0.268 4.268 19 S 0.068 5.932 20 C -0.091 4.091 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.147 0.853 25 H 0.121 0.879 26 H 0.299 0.701 27 H 0.116 0.884 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -1.523 1.895 6.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.220 4.220 3 C -0.021 4.021 4 C -0.364 4.364 5 C 0.242 3.758 6 O -0.413 6.413 7 C 0.154 3.846 8 C -0.452 4.452 9 H 0.107 0.893 10 C -0.179 4.179 11 N -0.402 5.402 12 Si 0.794 3.206 13 H -0.176 1.176 14 H -0.180 1.180 15 H -0.190 1.190 16 C -0.171 4.171 17 C -0.091 4.091 18 C -0.400 4.400 19 S 0.330 5.670 20 C -0.207 4.207 21 H 0.082 0.918 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.165 0.835 25 H 0.137 0.863 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.299 -2.468 1.670 6.968 hybrid contribution 2.282 0.316 -0.168 2.310 sum -4.017 -2.153 1.501 4.798 Atomic orbital electron populations 1.20519 0.89936 1.02065 1.01615 1.18768 0.96312 0.90058 1.16876 1.20858 0.92261 0.96952 0.91999 1.21667 0.94487 0.94653 1.25600 1.23704 0.88724 0.92335 0.71041 1.90440 1.19444 1.90737 1.40681 1.19891 0.92607 0.88934 0.83207 1.19875 0.92213 1.13565 1.19561 0.89327 1.26899 1.05802 0.91616 0.93633 1.69704 1.40886 1.20238 1.09417 0.85363 0.75745 0.79329 0.80202 1.17607 1.17957 1.18970 1.19466 0.91821 0.93935 1.11918 1.19784 0.99788 0.91478 0.98012 1.25133 0.95064 1.02930 1.16914 1.83075 1.08141 0.96427 1.79385 1.22917 0.96037 0.97431 1.04272 0.91839 0.90486 0.93363 0.83516 0.86331 0.88930 0.86610 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.57 9.79 71.24 0.70 -1.88 15 2 C -0.21 -8.64 5.90 -19.68 -0.12 -8.76 15 3 C 0.00 0.01 9.29 22.43 0.21 0.22 15 4 C -0.36 -16.89 6.05 -18.68 -0.11 -17.00 15 5 C 0.37 16.09 11.41 69.91 0.80 16.89 15 6 O -0.53 -27.23 14.78 -3.37 -0.05 -27.28 15 7 C 0.16 8.49 5.63 -18.22 -0.10 8.39 15 8 C -0.43 -22.95 7.34 23.19 0.17 -22.78 15 9 H 0.09 4.95 6.55 -2.91 -0.02 4.93 15 10 C 0.04 2.06 3.97 85.44 0.34 2.40 15 11 N -0.78 -39.07 10.90 21.92 0.24 -38.83 15 12 Si 0.97 37.75 29.60 68.60 2.03 39.78 15 13 H -0.25 -9.44 7.11 99.48 0.71 -8.74 15 14 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 16 C -0.16 -8.25 5.51 -19.91 -0.11 -8.36 15 17 C -0.06 -2.87 8.31 21.49 0.18 -2.69 15 18 C -0.27 -10.62 11.11 66.64 0.74 -9.88 15 19 S 0.07 2.55 22.45 -56.49 -1.27 1.28 15 20 C -0.09 -4.08 6.29 23.08 0.15 -3.93 15 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.08 1.96 8.05 -2.39 -0.02 1.95 15 23 H 0.05 1.45 7.46 -2.39 -0.02 1.43 15 24 H 0.15 4.39 8.05 -2.91 -0.02 4.36 15 25 H 0.12 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.30 13.47 8.30 -92.70 -0.77 12.70 15 27 H 0.12 5.51 6.23 -2.91 -0.02 5.50 15 28 H 0.18 5.69 8.06 -2.91 -0.02 5.67 15 Total: -1.00 -62.32 258.53 4.98 -57.34 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.19 Total: 15.10 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 2.84 Total: -47.39 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.24 Total: -38.83 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.27 Total: 1.28 kcal Total: -62.32 4.98 -57.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343439.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -62.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds