Wall clock time and date at job start Mon Mar 30 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32422 * 122.04993 * 2 1 4 4 S 1.75411 * 110.91968 * 180.02562 * 3 2 1 5 5 C 1.76238 * 91.61060 * 0.02562 * 4 3 2 6 6 C 1.39011 * 129.73874 * 180.28833 * 5 4 3 7 7 C 1.40246 * 120.48025 * 180.20486 * 6 5 4 8 8 C 1.40339 * 120.57642 * 179.76960 * 7 6 5 9 9 H 1.08001 * 120.00214 * 146.56035 * 8 7 6 10 10 C 1.40235 * 119.99819 * 326.55172 * 8 7 6 11 11 N 1.30676 * 120.00375 * 339.86539 * 10 8 7 12 12 Si 1.86807 * 119.99840 * 159.86292 * 10 8 7 13 13 H 1.48494 * 109.47147 * 180.02562 * 12 10 8 14 14 H 1.48506 * 109.46927 * 299.99878 * 12 10 8 15 15 H 1.48493 * 109.47120 * 59.99802 * 12 10 8 16 16 C 1.47066 * 118.84302 * 359.48256 * 7 6 5 17 17 C 1.46320 * 120.39135 * 180.22975 * 16 7 6 18 18 O 1.21378 * 119.99969 * 358.22073 * 17 16 7 19 19 C 1.38438 * 119.21926 * 0.25976 * 16 7 6 20 20 C 1.40582 * 109.28913 * 359.97438 * 5 4 3 21 21 H 1.08999 * 109.47355 * 269.97434 * 1 2 3 22 22 H 1.08994 * 109.47047 * 29.97817 * 1 2 3 23 23 H 1.09001 * 109.46556 * 149.98129 * 1 2 3 24 24 H 1.07999 * 124.53975 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.76027 * 359.96616 * 6 5 4 26 26 H 0.96996 * 119.99642 * 353.37858 * 11 10 8 27 27 H 1.08002 * 120.00278 * 178.21323 * 17 16 7 28 28 H 1.07994 * 119.64055 * 179.97438 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1224 0.0000 4 16 3.9309 0.7838 -0.0007 5 6 3.6394 -0.9543 -0.0018 6 6 4.5466 -2.0076 0.0026 7 6 4.0952 -3.3354 -0.0036 8 6 5.0093 -4.4002 -0.0041 9 1 4.7671 -5.3201 0.5073 10 6 6.2373 -4.2698 -0.6687 11 7 6.3857 -3.3598 -1.5947 12 14 7.6610 -5.3968 -0.2300 13 1 8.8380 -5.0571 -1.0692 14 1 8.0082 -5.2209 1.2031 15 1 7.2687 -6.8080 -0.4747 16 6 2.6472 -3.5924 -0.0033 17 6 2.1389 -4.9645 -0.0046 18 8 2.9134 -5.8985 -0.0386 19 6 1.7706 -2.5209 -0.0023 20 6 2.2540 -1.1929 -0.0010 21 1 -0.3634 -0.0005 1.0276 22 1 -0.3633 0.8901 -0.5135 23 1 -0.3632 -0.8899 -0.5141 24 1 1.7807 2.1135 0.0004 25 1 5.6068 -1.8018 0.0069 26 1 5.6223 -2.8396 -1.8902 27 1 1.0747 -5.1463 0.0249 28 1 0.7059 -2.7018 -0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:54 Heat of formation + Delta-G solvation = -30.265078 kcal Electronic energy + Delta-G solvation = -14927.873269 eV Core-core repulsion = 12419.674939 eV Total energy + Delta-G solvation = -2508.198330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48331 -39.15647 -37.19924 -34.98941 -32.10554 -30.83647 -28.70364 -27.45165 -24.97353 -23.36100 -22.13328 -20.32480 -19.70897 -18.19778 -17.34133 -16.65659 -15.95292 -15.76975 -15.42952 -15.16020 -14.67637 -14.56846 -14.36550 -13.92693 -13.65742 -13.41085 -13.17586 -12.87177 -12.54715 -12.07814 -11.98809 -11.68430 -11.52841 -11.40333 -11.01295 -10.39671 -10.21084 -9.51229 -9.11741 -8.55501 -6.57370 0.01365 0.14936 0.83527 1.31808 1.34186 1.44622 1.72465 1.74863 1.89124 2.22900 2.60757 3.32677 3.69759 3.94223 4.15447 4.37353 4.58579 4.69950 4.77880 4.82490 4.92143 5.02658 5.10790 5.22141 5.30781 5.44478 5.62485 5.68059 5.87029 5.99809 6.03534 6.54881 6.67351 6.97026 7.82514 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025824 B = 0.008523 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.021697 B = 3284.258126 C = 4252.709855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.050 4.050 3 C -0.253 4.253 4 S -0.009 6.009 5 C -0.067 4.067 6 C -0.231 4.231 7 C 0.103 3.897 8 C -0.480 4.480 9 H 0.097 0.903 10 C -0.004 4.004 11 N -0.795 5.795 12 Si 1.116 2.884 13 H -0.266 1.266 14 H -0.258 1.258 15 H -0.259 1.259 16 C -0.309 4.309 17 C 0.379 3.621 18 O -0.512 6.512 19 C 0.031 3.969 20 C -0.231 4.231 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.183 0.817 25 H 0.083 0.917 26 H 0.286 0.714 27 H 0.139 0.861 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 4.099 2.342 10.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.061 4.061 3 C -0.385 4.385 4 S 0.252 5.748 5 C -0.182 4.182 6 C -0.258 4.258 7 C 0.096 3.904 8 C -0.507 4.507 9 H 0.115 0.885 10 C -0.222 4.222 11 N -0.417 5.417 12 Si 0.932 3.068 13 H -0.190 1.190 14 H -0.183 1.183 15 H -0.183 1.183 16 C -0.312 4.312 17 C 0.244 3.756 18 O -0.391 6.391 19 C 0.011 3.989 20 C -0.236 4.236 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.094 0.906 24 H 0.201 0.799 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.155 0.845 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.756 4.377 1.954 7.491 hybrid contribution -2.291 -0.097 0.156 2.298 sum -8.047 4.280 2.109 9.355 Atomic orbital electron populations 1.20632 0.87298 1.03786 1.03310 1.19017 0.98421 0.90234 0.98425 1.24801 0.93615 1.02611 1.17457 1.83846 1.09264 0.99189 1.82467 1.22748 0.97464 0.96253 1.01784 1.20245 0.96334 0.91548 1.17664 1.18795 0.92212 0.91724 0.87663 1.21200 1.00725 1.01883 1.26896 0.88521 1.28750 1.03606 0.97860 0.91983 1.70489 1.36014 1.14870 1.20316 0.83031 0.71586 0.74221 0.77990 1.19003 1.18278 1.18339 1.21875 0.93361 0.96685 1.19247 1.24006 0.95287 0.86036 0.70247 1.90454 1.63022 1.46933 1.38717 1.21329 0.99388 0.89190 0.88949 1.18055 0.90903 0.94848 1.19794 0.89887 0.89895 0.90646 0.79936 0.89877 0.90192 0.84527 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 9.89 71.24 0.70 -1.30 15 2 C -0.05 -1.65 5.83 -20.36 -0.12 -1.76 15 3 C -0.25 -8.22 10.79 66.71 0.72 -7.50 15 4 S -0.01 -0.36 23.29 -56.49 -1.32 -1.67 15 5 C -0.07 -3.15 6.44 23.03 0.15 -3.00 15 6 C -0.23 -12.16 7.93 22.94 0.18 -11.98 15 7 C 0.10 5.44 5.30 -19.96 -0.11 5.34 15 8 C -0.48 -26.10 7.79 23.27 0.18 -25.92 15 9 H 0.10 5.36 5.95 -2.91 -0.02 5.35 15 10 C 0.00 -0.20 5.02 85.35 0.43 0.23 15 11 N -0.79 -43.45 12.51 21.88 0.27 -43.17 15 12 Si 1.12 44.13 29.98 68.60 2.06 46.19 15 13 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 14 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 15 H -0.26 -9.70 7.11 99.48 0.71 -9.00 15 16 C -0.31 -13.74 6.03 -18.81 -0.11 -13.86 15 17 C 0.38 14.88 11.41 69.92 0.80 15.68 15 18 O -0.51 -24.53 14.53 -3.33 -0.05 -24.58 15 19 C 0.03 1.17 9.35 23.08 0.22 1.38 15 20 C -0.23 -9.36 5.85 -21.34 -0.12 -9.48 15 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.08 1.48 8.11 -2.39 -0.02 1.46 15 23 H 0.07 1.50 7.24 -2.39 -0.02 1.48 15 24 H 0.18 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.08 4.68 6.90 -2.91 -0.02 4.66 15 26 H 0.29 16.33 6.67 -92.71 -0.62 15.72 15 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 15 28 H 0.16 4.22 7.29 -2.91 -0.02 4.20 15 Total: -1.00 -65.40 259.68 5.22 -60.17 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.34 Total: 15.23 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 2.92 Total: -52.17 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.27 Total: -43.17 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.06 Total: 46.19 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.32 Total: -1.67 kcal Total: -65.40 5.22 -60.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.908 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds