Wall clock time and date at job start Mon Mar 30 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35961 * 119.66122 * 2 1 4 4 C 1.40307 * 120.22280 * 179.97438 * 3 2 1 5 5 C 1.46906 * 120.10256 * 180.02562 * 4 3 2 6 6 O 1.21302 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.39449 * 119.80558 * 0.02562 * 4 3 2 8 8 C 1.39327 * 120.08808 * 359.97403 * 7 4 3 9 9 S 1.75799 * 130.10611 * 179.71752 * 8 7 4 10 10 C 1.69972 * 93.22434 * 179.97438 * 9 8 7 11 11 C 1.36605 * 111.97537 * 0.31369 * 10 9 8 12 12 C 1.40864 * 123.27609 * 179.73965 * 11 10 9 13 13 H 1.07998 * 119.99753 * 148.43377 * 12 11 10 14 14 C 1.39744 * 119.99841 * 328.43692 * 12 11 10 15 15 N 1.31053 * 119.99790 * 169.76733 * 14 12 11 16 16 Si 1.86795 * 120.00006 * 349.76772 * 14 12 11 17 17 H 1.48505 * 109.47252 * 88.29235 * 16 14 12 18 18 H 1.48500 * 109.46996 * 208.29121 * 16 14 12 19 19 H 1.48500 * 109.47441 * 328.29023 * 16 14 12 20 20 C 1.39685 * 119.70903 * 0.02562 * 8 7 4 21 21 H 1.08998 * 109.47646 * 263.73021 * 1 2 3 22 22 H 1.09000 * 109.46916 * 23.72972 * 1 2 3 23 23 H 1.09000 * 109.47031 * 143.72640 * 1 2 3 24 24 H 1.08002 * 119.89204 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.00702 * 180.02562 * 5 4 3 26 26 H 1.07997 * 119.95466 * 180.02562 * 7 4 3 27 27 H 1.08000 * 124.01429 * 180.02562 * 10 9 8 28 28 H 0.96996 * 119.99709 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1798 1.1815 0.0000 4 6 3.5828 1.1952 0.0005 5 6 4.3071 2.4733 0.0011 6 8 3.6921 3.5189 0.0016 7 6 4.2878 -0.0080 0.0005 8 6 3.6007 -1.2201 0.0005 9 16 4.2121 -2.8683 -0.0061 10 6 2.6542 -3.5481 -0.0003 11 6 1.6790 -2.5915 -0.0004 12 6 0.3026 -2.8909 -0.0015 13 1 -0.3947 -2.2272 0.4880 14 6 -0.1605 -4.0468 -0.6359 15 7 -1.4019 -4.4327 -0.4698 16 14 0.9898 -5.0416 -1.7205 17 1 1.7109 -6.0409 -0.8917 18 1 0.2018 -5.7419 -2.7663 19 1 1.9713 -4.1329 -2.3657 20 6 2.2039 -1.2241 0.0000 21 1 -0.3634 -0.1122 1.0215 22 1 -0.3633 0.9408 -0.4136 23 1 -0.3633 -0.8285 -0.6080 24 1 1.6325 2.1125 -0.0004 25 1 5.3870 2.4821 0.0011 26 1 5.3677 -0.0002 0.0014 27 1 2.4585 -4.6102 -0.0014 28 1 -1.7234 -5.2348 -0.9104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396343520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:13 Heat of formation + Delta-G solvation = -7.416591 kcal Electronic energy + Delta-G solvation = -14888.791405 eV Core-core repulsion = 12381.583860 eV Total energy + Delta-G solvation = -2507.207545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57204 -38.18774 -35.08103 -32.80616 -32.42690 -29.42416 -26.97433 -25.47239 -24.45109 -21.66410 -20.87339 -19.48595 -17.07165 -16.78190 -16.29397 -15.30630 -14.80937 -14.74044 -14.14942 -14.03530 -13.32287 -13.03759 -12.74801 -12.35984 -12.31465 -12.01719 -11.65441 -11.33089 -11.17509 -10.81278 -10.29733 -10.05435 -9.88244 -9.64004 -9.59098 -9.28064 -8.62178 -7.74681 -7.01621 -6.95272 -4.55823 0.85178 1.78901 2.45807 2.50003 2.98101 3.12673 3.23886 3.42227 3.43812 3.95068 4.23923 4.44809 4.96080 5.14559 5.41741 5.48799 5.68885 5.81651 5.88823 6.25352 6.30445 6.36810 6.48939 6.62533 6.75383 6.86436 7.05234 7.21598 7.39457 7.51488 7.59748 8.15930 8.30037 8.66353 10.01444 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029951 B = 0.008348 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.649905 B = 3353.343872 C = 4107.786081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.046 4.046 3 C -0.092 4.092 4 C -0.193 4.193 5 C 0.389 3.611 6 O -0.473 6.473 7 C -0.045 4.045 8 C -0.149 4.149 9 S 0.062 5.938 10 C -0.434 4.434 11 C 0.079 3.921 12 C -0.424 4.424 13 H 0.105 0.895 14 C 0.084 3.916 15 N -0.813 5.813 16 Si 0.916 3.084 17 H -0.272 1.272 18 H -0.294 1.294 19 H -0.244 1.244 20 C -0.028 4.028 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.099 0.901 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 5.010 -0.552 9.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.048 4.048 3 C -0.114 4.114 4 C -0.197 4.197 5 C 0.249 3.751 6 O -0.348 6.348 7 C -0.069 4.069 8 C -0.265 4.265 9 S 0.326 5.674 10 C -0.568 4.568 11 C 0.069 3.931 12 C -0.455 4.455 13 H 0.123 0.877 14 C -0.135 4.135 15 N -0.438 5.438 16 Si 0.743 3.257 17 H -0.199 1.199 18 H -0.222 1.222 19 H -0.167 1.167 20 C -0.039 4.039 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.118 0.882 24 H 0.144 0.856 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.159 0.841 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.559 4.652 -0.590 9.759 hybrid contribution -1.032 -0.375 -0.435 1.181 sum 7.527 4.277 -1.025 8.718 Atomic orbital electron populations 1.21120 0.90765 1.03068 1.03007 1.19429 0.96469 0.90811 0.98055 1.20611 0.92880 0.97537 1.00326 1.20500 0.94925 0.94624 1.09606 1.23894 0.94642 0.86770 0.69774 1.90493 1.73136 1.35192 1.35986 1.20585 0.98660 0.89531 0.98112 1.22646 0.97104 0.98085 1.08627 1.81789 1.09967 0.94047 1.81635 1.23941 0.94650 1.02017 1.36242 1.17546 0.94454 0.87301 0.93769 1.19190 0.90954 1.06017 1.29385 0.87734 1.26082 0.95564 0.96016 0.95815 1.69710 1.16264 1.22023 1.35784 0.86191 0.80055 0.79862 0.79560 1.19881 1.22231 1.16707 1.19771 0.91482 0.94419 0.98213 0.91355 0.92884 0.88229 0.85585 0.88587 0.85706 0.84068 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.50 36.00 0.31 -1.96 15 2 C -0.05 -0.91 5.89 -104.45 -0.61 -1.52 15 3 C -0.09 -1.62 9.11 -39.62 -0.36 -1.98 15 4 C -0.19 -3.08 5.86 -105.16 -0.62 -3.70 15 5 C 0.39 5.21 11.44 34.24 0.39 5.60 15 6 O -0.47 -7.86 17.16 5.54 0.10 -7.76 15 7 C -0.05 -0.73 9.82 -38.73 -0.38 -1.11 15 8 C -0.15 -2.96 6.42 -38.64 -0.25 -3.21 15 9 S 0.06 1.24 22.96 -107.50 -2.47 -1.23 15 10 C -0.43 -10.16 7.96 30.14 0.24 -9.92 15 11 C 0.08 1.90 5.21 -106.18 -0.55 1.35 15 12 C -0.42 -10.75 7.92 -38.03 -0.30 -11.05 15 13 H 0.10 2.68 5.80 -52.49 -0.30 2.38 15 14 C 0.08 2.12 5.50 -17.32 -0.10 2.02 15 15 N -0.81 -20.92 13.94 55.54 0.77 -20.15 15 16 Si 0.92 20.69 24.57 -169.99 -4.18 16.52 15 17 H -0.27 -6.07 6.58 56.52 0.37 -5.70 15 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 19 H -0.24 -5.66 6.78 56.52 0.38 -5.28 15 20 C -0.03 -0.62 6.00 -105.05 -0.63 -1.25 15 21 H 0.07 1.22 7.99 -51.93 -0.41 0.81 15 22 H 0.05 0.83 8.00 -51.93 -0.42 0.41 15 23 H 0.10 2.05 5.63 -51.93 -0.29 1.75 15 24 H 0.13 2.08 7.60 -52.49 -0.40 1.69 15 25 H 0.10 0.87 8.06 -52.49 -0.42 0.44 15 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.14 3.38 4.67 -52.49 -0.25 3.13 15 28 H 0.29 6.75 8.30 -40.82 -0.34 6.42 15 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -27.49 252.82 -6.93 -34.42 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -2.10 Total: 1.13 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -2.86 Total: -26.73 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.77 Total: -20.15 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.10 Total: -7.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.18 Total: 16.52 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.47 Total: -1.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.49 -6.93 -34.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.004 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds