Wall clock time and date at job start Mon Mar 30 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35961 * 119.66122 * 2 1 4 4 C 1.40307 * 120.22280 * 179.97438 * 3 2 1 5 5 C 1.46906 * 120.10256 * 180.02562 * 4 3 2 6 6 O 1.21302 * 119.99664 * 0.02562 * 5 4 3 7 7 C 1.39449 * 119.80558 * 0.02562 * 4 3 2 8 8 C 1.39327 * 120.08808 * 359.97403 * 7 4 3 9 9 S 1.75799 * 130.10611 * 179.71752 * 8 7 4 10 10 C 1.69972 * 93.22434 * 179.97438 * 9 8 7 11 11 C 1.36605 * 111.97537 * 0.31369 * 10 9 8 12 12 C 1.40864 * 123.27609 * 179.73965 * 11 10 9 13 13 H 1.07998 * 119.99753 * 148.43377 * 12 11 10 14 14 C 1.39744 * 119.99841 * 328.43692 * 12 11 10 15 15 N 1.31053 * 119.99790 * 169.76733 * 14 12 11 16 16 Si 1.86795 * 120.00006 * 349.76772 * 14 12 11 17 17 H 1.48505 * 109.47252 * 88.29235 * 16 14 12 18 18 H 1.48500 * 109.46996 * 208.29121 * 16 14 12 19 19 H 1.48500 * 109.47441 * 328.29023 * 16 14 12 20 20 C 1.39685 * 119.70903 * 0.02562 * 8 7 4 21 21 H 1.08998 * 109.47646 * 263.73021 * 1 2 3 22 22 H 1.09000 * 109.46916 * 23.72972 * 1 2 3 23 23 H 1.09000 * 109.47031 * 143.72640 * 1 2 3 24 24 H 1.08002 * 119.89204 * 359.97438 * 3 2 1 25 25 H 1.07997 * 120.00702 * 180.02562 * 5 4 3 26 26 H 1.07997 * 119.95466 * 180.02562 * 7 4 3 27 27 H 1.08000 * 124.01429 * 180.02562 * 10 9 8 28 28 H 0.96996 * 119.99709 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1798 1.1815 0.0000 4 6 3.5828 1.1952 0.0005 5 6 4.3071 2.4733 0.0011 6 8 3.6921 3.5189 0.0016 7 6 4.2878 -0.0080 0.0005 8 6 3.6007 -1.2201 0.0005 9 16 4.2121 -2.8683 -0.0061 10 6 2.6542 -3.5481 -0.0003 11 6 1.6790 -2.5915 -0.0004 12 6 0.3026 -2.8909 -0.0015 13 1 -0.3947 -2.2272 0.4880 14 6 -0.1605 -4.0468 -0.6359 15 7 -1.4019 -4.4327 -0.4698 16 14 0.9898 -5.0416 -1.7205 17 1 1.7109 -6.0409 -0.8917 18 1 0.2018 -5.7419 -2.7663 19 1 1.9713 -4.1329 -2.3657 20 6 2.2039 -1.2241 0.0000 21 1 -0.3634 -0.1122 1.0215 22 1 -0.3633 0.9408 -0.4136 23 1 -0.3633 -0.8285 -0.6080 24 1 1.6325 2.1125 -0.0004 25 1 5.3870 2.4821 0.0011 26 1 5.3677 -0.0002 0.0014 27 1 2.4585 -4.6102 -0.0014 28 1 -1.7234 -5.2348 -0.9104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396343520.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:13 Heat of formation + Delta-G solvation = -23.208603 kcal Electronic energy + Delta-G solvation = -14889.476198 eV Core-core repulsion = 12381.583860 eV Total energy + Delta-G solvation = -2507.892338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.93220 -39.49823 -36.74769 -34.58284 -33.86978 -30.97117 -28.54340 -27.14931 -25.84516 -23.11101 -22.39228 -20.98291 -18.85023 -18.32922 -17.59925 -16.83401 -16.37028 -16.18552 -15.49702 -15.40228 -14.90784 -14.67598 -14.19402 -14.06979 -13.84643 -13.61841 -13.29121 -12.90921 -12.86228 -12.43443 -11.90806 -11.69996 -11.60397 -11.31080 -11.10232 -10.73515 -10.15086 -9.31600 -8.88661 -8.58401 -6.43579 -0.52269 0.36373 0.96918 0.98697 1.23692 1.29079 1.44849 1.68480 1.82687 2.10563 2.75401 3.11872 3.41135 3.81634 3.99257 4.24684 4.34030 4.43244 4.52533 4.77213 4.83264 4.90286 4.96999 5.07828 5.22212 5.31669 5.49751 5.54025 5.71528 5.94992 6.25747 6.45342 6.54483 6.76714 8.17209 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029951 B = 0.008348 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.649905 B = 3353.343872 C = 4107.786081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.063 4.063 3 C -0.094 4.094 4 C -0.187 4.187 5 C 0.404 3.596 6 O -0.504 6.504 7 C -0.030 4.030 8 C -0.164 4.164 9 S 0.110 5.890 10 C -0.449 4.449 11 C 0.063 3.937 12 C -0.448 4.448 13 H 0.086 0.914 14 C 0.050 3.950 15 N -0.851 5.851 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.254 1.254 20 C -0.070 4.070 21 H 0.063 0.937 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.136 0.864 25 H 0.164 0.836 26 H 0.176 0.824 27 H 0.132 0.868 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.103 6.709 -0.850 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.191 4.191 5 C 0.265 3.735 6 O -0.380 6.380 7 C -0.053 4.053 8 C -0.279 4.279 9 S 0.373 5.627 10 C -0.584 4.584 11 C 0.053 3.947 12 C -0.481 4.481 13 H 0.103 0.897 14 C -0.164 4.164 15 N -0.478 5.478 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.178 1.178 20 C -0.080 4.080 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.153 0.847 25 H 0.180 0.820 26 H 0.193 0.807 27 H 0.149 0.851 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.920 6.348 -0.884 13.534 hybrid contribution -1.943 -0.718 -0.281 2.090 sum 9.977 5.630 -1.165 11.515 Atomic orbital electron populations 1.21003 0.90878 1.03123 1.02328 1.19563 0.96765 0.91100 0.99034 1.20844 0.94358 0.96904 0.99448 1.21034 0.94299 0.96480 1.07256 1.24570 0.96726 0.84456 0.67736 1.90515 1.74263 1.35989 1.37244 1.21061 1.00995 0.87690 0.95515 1.22970 0.96477 0.99433 1.09008 1.81390 1.06514 0.93565 1.81218 1.24197 0.97362 1.01830 1.35014 1.17782 0.94070 0.89178 0.93651 1.19241 0.91746 1.06360 1.30731 0.89659 1.26628 0.96490 0.96687 0.96605 1.69742 1.17355 1.23165 1.37586 0.85506 0.78577 0.78719 0.78517 1.19453 1.21044 1.17768 1.19827 0.92982 0.93951 1.01276 0.91837 0.90372 0.91109 0.84656 0.82017 0.80699 0.85087 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.50 71.23 0.61 -3.85 15 2 C -0.06 -2.47 5.89 -19.75 -0.12 -2.59 15 3 C -0.09 -3.12 9.11 22.24 0.20 -2.92 15 4 C -0.19 -5.15 5.86 -20.21 -0.12 -5.27 15 5 C 0.40 8.48 11.44 70.09 0.80 9.28 15 6 O -0.50 -14.61 17.16 -3.10 -0.05 -14.66 15 7 C -0.03 -0.81 9.82 22.82 0.22 -0.59 15 8 C -0.16 -6.09 6.42 22.88 0.15 -5.94 15 9 S 0.11 4.11 22.96 -56.49 -1.30 2.81 15 10 C -0.45 -21.09 7.96 67.44 0.54 -20.55 15 11 C 0.06 3.14 5.21 -20.87 -0.11 3.03 15 12 C -0.45 -23.99 7.92 23.28 0.18 -23.81 15 13 H 0.09 4.73 5.80 -2.91 -0.02 4.71 15 14 C 0.05 2.66 5.50 85.17 0.47 3.12 15 15 N -0.85 -45.89 13.94 21.80 0.30 -45.59 15 16 Si 0.96 43.58 24.57 68.60 1.69 45.27 15 17 H -0.27 -11.83 6.58 99.48 0.65 -11.18 15 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 19 H -0.25 -11.77 6.78 99.48 0.67 -11.09 15 20 C -0.07 -3.08 6.00 -20.14 -0.12 -3.20 15 21 H 0.06 2.41 7.99 -2.39 -0.02 2.39 15 22 H 0.08 2.47 8.00 -2.39 -0.02 2.45 15 23 H 0.07 3.11 5.63 -2.39 -0.01 3.10 15 24 H 0.14 4.19 7.60 -2.91 -0.02 4.17 15 25 H 0.16 1.54 8.06 -2.91 -0.02 1.51 15 26 H 0.18 3.03 8.06 -2.91 -0.02 3.01 15 27 H 0.13 6.32 4.67 -2.91 -0.01 6.30 15 28 H 0.29 14.35 8.30 -92.71 -0.77 13.58 15 Total: -1.00 -62.40 252.82 4.46 -57.95 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.11 Total: 7.51 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 2.71 Total: -53.28 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.30 Total: -45.59 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.05 Total: -14.66 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.69 Total: 45.27 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.81 kcal Total: -62.40 4.46 -57.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396343520.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.736 kcal (2) G-P(sol) polarization free energy of solvation -62.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds