Wall clock time and date at job start Mon Mar 30 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35969 * 119.88955 * 2 1 4 4 C 1.40848 * 120.68158 * 180.02562 * 3 2 1 5 5 C 1.46466 * 129.34543 * 180.28477 * 4 3 2 6 6 C 1.40861 * 123.27069 * 359.97438 * 5 4 3 7 7 H 1.07999 * 120.00286 * 18.32757 * 6 5 4 8 8 C 1.39749 * 120.00062 * 198.32489 * 6 5 4 9 9 N 1.31050 * 119.99924 * 15.73932 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 195.73890 * 8 6 5 11 11 H 1.48497 * 109.47106 * 60.00303 * 10 8 6 12 12 H 1.48504 * 109.46959 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47190 * 300.00176 * 10 8 6 14 14 C 1.36603 * 113.45357 * 180.13414 * 5 4 3 15 15 S 1.69971 * 111.97661 * 359.59943 * 14 5 4 16 16 C 1.39683 * 119.49650 * 359.97438 * 4 3 2 17 17 C 1.39329 * 119.70484 * 0.02562 * 16 4 3 18 18 C 1.39444 * 120.09185 * 359.96017 * 17 16 4 19 19 C 1.46911 * 120.09906 * 180.02562 * 18 17 16 20 20 O 1.21302 * 119.99913 * 185.58835 * 19 18 17 21 21 H 1.09000 * 109.47603 * 96.90911 * 1 2 3 22 22 H 1.09001 * 109.47467 * 216.91813 * 1 2 3 23 23 H 1.08999 * 109.47144 * 336.91252 * 1 2 3 24 24 H 1.08000 * 119.65635 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00228 * 179.97438 * 9 8 6 26 26 H 1.07999 * 124.01076 * 179.86898 * 14 5 4 27 27 H 1.08000 * 119.95870 * 179.97438 * 17 16 4 28 28 H 1.08000 * 119.99722 * 5.58504 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1846 1.1788 0.0000 4 6 3.5929 1.1983 -0.0005 5 6 4.5058 2.3437 0.0050 6 6 4.0664 3.6820 0.0116 7 1 3.0544 3.9167 0.3070 8 6 4.9399 4.7061 -0.3640 9 7 6.0452 4.4213 -1.0079 10 14 4.5321 6.4810 0.0518 11 1 4.4165 6.6303 1.5247 12 1 5.6108 7.3680 -0.4530 13 1 3.2446 6.8556 -0.5863 14 6 5.8246 1.9879 -0.0004 15 16 6.0282 0.3004 -0.0011 16 6 4.2974 -0.0079 -0.0005 17 6 3.6007 -1.2144 -0.0005 18 6 2.2062 -1.2165 0.0003 19 6 1.4714 -2.4886 0.0009 20 8 0.2626 -2.4908 -0.1007 21 1 -0.3634 -0.1236 -1.0202 22 1 -0.3634 -0.8216 0.6173 23 1 -0.3633 0.9453 0.4030 24 1 1.6372 2.1098 -0.0004 25 1 6.6514 5.1322 -1.2689 26 1 6.6411 2.6948 0.0004 27 1 4.1412 -2.1494 -0.0010 28 1 2.0074 -3.4218 0.0917 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:49 Heat of formation + Delta-G solvation = -7.636642 kcal Electronic energy + Delta-G solvation = -14706.528502 eV Core-core repulsion = 12199.311415 eV Total energy + Delta-G solvation = -2507.217087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.59727 -37.89330 -35.11360 -32.77854 -31.62563 -28.97056 -27.11613 -25.85202 -23.55457 -21.55540 -21.16174 -19.13946 -17.03010 -16.71507 -16.07045 -15.26491 -14.51461 -14.37805 -14.07181 -14.02548 -13.04888 -12.90645 -12.80253 -12.23431 -12.15446 -11.79439 -11.49478 -11.33930 -11.09760 -10.77688 -10.45135 -10.12196 -9.96802 -9.49438 -9.23572 -9.19754 -8.63825 -7.49467 -6.87030 -6.72210 -4.36790 1.02208 1.91740 2.65401 2.72154 2.96692 3.04570 3.07711 3.66394 3.73303 3.93006 4.35425 4.56666 5.19576 5.21313 5.41374 5.58396 5.76342 5.97004 6.10377 6.13514 6.26229 6.44743 6.51690 6.72788 6.92401 7.06807 7.14314 7.40792 7.61862 7.73089 7.87378 8.36506 8.68291 8.79855 10.19205 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.007235 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.850192 B = 3868.926147 C = 4777.819125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.053 4.053 3 C -0.094 4.094 4 C -0.021 4.021 5 C 0.068 3.932 6 C -0.433 4.433 7 H 0.076 0.924 8 C 0.069 3.931 9 N -0.796 5.796 10 Si 0.912 3.088 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.266 1.266 14 C -0.345 4.345 15 S 0.041 5.959 16 C -0.169 4.169 17 C -0.029 4.029 18 C -0.209 4.209 19 C 0.386 3.614 20 O -0.471 6.471 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.123 0.877 25 H 0.279 0.721 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -6.455 1.696 7.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.113 4.113 4 C -0.032 4.032 5 C 0.060 3.940 6 C -0.466 4.466 7 H 0.094 0.906 8 C -0.147 4.147 9 N -0.422 5.422 10 Si 0.737 3.263 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.191 1.191 14 C -0.481 4.481 15 S 0.305 5.695 16 C -0.284 4.284 17 C -0.052 4.052 18 C -0.212 4.212 19 C 0.247 3.753 20 O -0.347 6.347 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.140 0.860 25 H 0.090 0.910 26 H 0.183 0.817 27 H 0.141 0.859 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.232 -7.149 1.522 7.643 hybrid contribution -0.962 2.010 0.037 2.228 sum -3.194 -5.140 1.559 6.249 Atomic orbital electron populations 1.20942 0.91024 1.02158 1.02512 1.19459 0.95835 0.91859 0.98570 1.20473 0.92431 0.97329 1.01109 1.20011 0.93542 0.93141 0.96531 1.17386 0.89333 0.91648 0.95670 1.18939 0.98783 0.89723 1.39121 0.90566 1.25785 0.94622 1.01512 0.92792 1.69822 1.10140 1.35079 1.27181 0.86291 0.78987 0.81053 0.79972 1.18913 1.20363 1.19077 1.24521 1.01096 0.94375 1.28149 1.81915 1.00583 1.06027 1.81008 1.22641 0.98976 0.96359 1.10398 1.20602 0.92278 0.95863 0.96478 1.20280 0.93618 0.95291 1.12039 1.23808 0.88862 0.92287 0.70313 1.90446 1.17560 1.90297 1.36402 0.91625 0.89886 0.92826 0.85955 0.90991 0.81693 0.85920 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.71 36.01 0.31 -1.43 15 2 C -0.05 -0.97 5.87 -104.66 -0.61 -1.59 15 3 C -0.09 -1.93 9.38 -39.41 -0.37 -2.30 15 4 C -0.02 -0.49 6.03 -105.06 -0.63 -1.12 15 5 C 0.07 1.77 5.72 -106.18 -0.61 1.16 15 6 C -0.43 -11.22 9.06 -38.03 -0.34 -11.57 15 7 H 0.08 1.88 7.57 -52.49 -0.40 1.48 15 8 C 0.07 1.72 5.31 -17.32 -0.09 1.63 15 9 N -0.80 -20.42 10.78 55.54 0.60 -19.82 15 10 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 15 11 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 12 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 14 C -0.35 -8.76 9.55 30.14 0.29 -8.48 15 15 S 0.04 0.87 22.96 -107.50 -2.47 -1.60 15 16 C -0.17 -3.56 6.42 -38.64 -0.25 -3.81 15 17 C -0.03 -0.50 9.82 -38.73 -0.38 -0.88 15 18 C -0.21 -3.51 5.86 -105.16 -0.62 -4.13 15 19 C 0.39 5.38 11.38 34.24 0.39 5.77 15 20 O -0.47 -7.68 14.13 5.54 0.08 -7.60 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.08 1.32 5.85 -51.93 -0.30 1.01 15 23 H 0.05 0.77 8.00 -51.93 -0.42 0.36 15 24 H 0.12 2.41 7.71 -52.49 -0.40 2.01 15 25 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 26 H 0.17 4.43 6.15 -52.49 -0.32 4.11 15 27 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 28 H 0.09 0.91 8.06 -52.49 -0.42 0.48 15 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -27.75 259.74 -8.07 -35.82 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -2.25 Total: 2.46 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -2.92 Total: -26.74 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.60 Total: -19.82 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.08 Total: -7.60 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.47 Total: -1.60 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.75 -8.07 -35.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.187 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds