Wall clock time and date at job start Mon Mar 30 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35969 * 119.88955 * 2 1 4 4 C 1.40848 * 120.68158 * 180.02562 * 3 2 1 5 5 C 1.46466 * 129.34543 * 180.28477 * 4 3 2 6 6 C 1.40861 * 123.27069 * 359.97438 * 5 4 3 7 7 H 1.07999 * 120.00286 * 18.32757 * 6 5 4 8 8 C 1.39749 * 120.00062 * 198.32489 * 6 5 4 9 9 N 1.31050 * 119.99924 * 15.73932 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 195.73890 * 8 6 5 11 11 H 1.48497 * 109.47106 * 60.00303 * 10 8 6 12 12 H 1.48504 * 109.46959 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47190 * 300.00176 * 10 8 6 14 14 C 1.36603 * 113.45357 * 180.13414 * 5 4 3 15 15 S 1.69971 * 111.97661 * 359.59943 * 14 5 4 16 16 C 1.39683 * 119.49650 * 359.97438 * 4 3 2 17 17 C 1.39329 * 119.70484 * 0.02562 * 16 4 3 18 18 C 1.39444 * 120.09185 * 359.96017 * 17 16 4 19 19 C 1.46911 * 120.09906 * 180.02562 * 18 17 16 20 20 O 1.21302 * 119.99913 * 185.58835 * 19 18 17 21 21 H 1.09000 * 109.47603 * 96.90911 * 1 2 3 22 22 H 1.09001 * 109.47467 * 216.91813 * 1 2 3 23 23 H 1.08999 * 109.47144 * 336.91252 * 1 2 3 24 24 H 1.08000 * 119.65635 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00228 * 179.97438 * 9 8 6 26 26 H 1.07999 * 124.01076 * 179.86898 * 14 5 4 27 27 H 1.08000 * 119.95870 * 179.97438 * 17 16 4 28 28 H 1.08000 * 119.99722 * 5.58504 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1846 1.1788 0.0000 4 6 3.5929 1.1983 -0.0005 5 6 4.5058 2.3437 0.0050 6 6 4.0664 3.6820 0.0116 7 1 3.0544 3.9167 0.3070 8 6 4.9399 4.7061 -0.3640 9 7 6.0452 4.4213 -1.0079 10 14 4.5321 6.4810 0.0518 11 1 4.4165 6.6303 1.5247 12 1 5.6108 7.3680 -0.4530 13 1 3.2446 6.8556 -0.5863 14 6 5.8246 1.9879 -0.0004 15 16 6.0282 0.3004 -0.0011 16 6 4.2974 -0.0079 -0.0005 17 6 3.6007 -1.2144 -0.0005 18 6 2.2062 -1.2165 0.0003 19 6 1.4714 -2.4886 0.0009 20 8 0.2626 -2.4908 -0.1007 21 1 -0.3634 -0.1236 -1.0202 22 1 -0.3634 -0.8216 0.6173 23 1 -0.3633 0.9453 0.4030 24 1 1.6372 2.1098 -0.0004 25 1 6.6514 5.1322 -1.2689 26 1 6.6411 2.6948 0.0004 27 1 4.1412 -2.1494 -0.0010 28 1 2.0074 -3.4218 0.0917 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396344007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:49 Heat of formation + Delta-G solvation = -22.258570 kcal Electronic energy + Delta-G solvation = -14707.162556 eV Core-core repulsion = 12199.311415 eV Total energy + Delta-G solvation = -2507.851142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.96675 -39.29361 -36.82261 -34.47761 -33.11457 -30.59249 -28.69597 -27.53580 -25.01424 -23.05758 -22.63542 -20.79411 -18.54391 -18.50813 -17.55480 -16.80560 -16.09340 -15.67713 -15.51370 -15.38593 -14.59235 -14.56707 -14.28497 -13.74802 -13.68527 -13.31167 -13.03657 -12.98361 -12.72444 -12.44189 -12.14742 -11.74895 -11.59908 -11.23766 -10.99569 -10.40770 -10.22243 -9.15172 -8.68122 -8.48263 -6.29004 -0.40201 0.40844 1.10799 1.16772 1.35488 1.44065 1.47743 1.89895 2.04038 2.20176 2.77951 3.33231 3.47738 3.85089 3.98711 4.28426 4.39298 4.63286 4.67115 4.79332 4.87353 5.05202 5.11707 5.17199 5.23159 5.34600 5.63301 5.66889 5.92592 6.00931 6.46281 6.60465 6.78311 6.89839 8.34611 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.007235 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.850192 B = 3868.926147 C = 4777.819125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.056 4.056 3 C -0.111 4.111 4 C -0.062 4.062 5 C 0.044 3.956 6 C -0.468 4.468 7 H 0.075 0.925 8 C 0.027 3.973 9 N -0.827 5.827 10 Si 0.984 3.016 11 H -0.262 1.262 12 H -0.269 1.269 13 H -0.259 1.259 14 C -0.384 4.384 15 S 0.077 5.923 16 C -0.182 4.182 17 C -0.018 4.018 18 C -0.203 4.203 19 C 0.398 3.602 20 O -0.491 6.491 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.285 0.715 26 H 0.140 0.860 27 H 0.171 0.829 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 -8.535 1.925 9.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.130 4.130 4 C -0.072 4.072 5 C 0.035 3.965 6 C -0.501 4.501 7 H 0.094 0.906 8 C -0.186 4.186 9 N -0.454 5.454 10 Si 0.805 3.195 11 H -0.186 1.186 12 H -0.193 1.193 13 H -0.183 1.183 14 C -0.520 4.520 15 S 0.340 5.660 16 C -0.297 4.297 17 C -0.041 4.041 18 C -0.207 4.207 19 C 0.260 3.740 20 O -0.367 6.367 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.095 0.905 26 H 0.158 0.842 27 H 0.188 0.812 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.466 -9.247 1.749 10.029 hybrid contribution -0.690 2.501 -0.044 2.595 sum -4.157 -6.746 1.705 8.105 Atomic orbital electron populations 1.20944 0.89247 1.02927 1.02967 1.19858 0.97198 0.91817 0.97104 1.20531 0.91662 0.98383 1.02448 1.20089 0.94595 0.93192 0.99352 1.17828 0.90399 0.92849 0.95441 1.19271 0.99309 0.90896 1.40581 0.90649 1.26692 0.94200 1.05711 0.92044 1.69918 1.11075 1.36591 1.27844 0.85211 0.79096 0.75530 0.79657 1.18618 1.19337 1.18314 1.24435 1.00522 0.97034 1.30031 1.81387 1.00925 1.02352 1.81321 1.22946 0.98698 0.97245 1.10846 1.21065 0.92542 0.96140 0.94356 1.20884 0.93821 0.96516 1.09484 1.24415 0.88380 0.92485 0.68691 1.90462 1.18833 1.90376 1.37015 0.91092 0.89337 0.91982 0.86540 0.90471 0.84243 0.81176 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.10 8.71 71.24 0.62 -2.47 15 2 C -0.06 -1.95 5.87 -19.89 -0.12 -2.07 15 3 C -0.11 -4.62 9.38 22.38 0.21 -4.41 15 4 C -0.06 -2.93 6.03 -20.15 -0.12 -3.06 15 5 C 0.04 2.39 5.72 -20.88 -0.12 2.27 15 6 C -0.47 -25.53 9.06 23.28 0.21 -25.32 15 7 H 0.08 3.93 7.57 -2.91 -0.02 3.91 15 8 C 0.03 1.40 5.31 85.17 0.45 1.85 15 9 N -0.83 -44.42 10.78 21.80 0.24 -44.18 15 10 Si 0.98 39.09 29.59 68.60 2.03 41.12 15 11 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 12 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 13 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 14 C -0.38 -20.53 9.55 67.44 0.64 -19.88 15 15 S 0.08 3.28 22.96 -56.49 -1.30 1.99 15 16 C -0.18 -7.55 6.42 22.88 0.15 -7.41 15 17 C -0.02 -0.56 9.82 22.82 0.22 -0.34 15 18 C -0.20 -6.10 5.86 -20.21 -0.12 -6.22 15 19 C 0.40 8.92 11.38 70.09 0.80 9.72 15 20 O -0.49 -13.82 14.13 -3.10 -0.04 -13.86 15 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.09 2.55 5.85 -2.39 -0.01 2.54 15 23 H 0.06 1.70 8.00 -2.39 -0.02 1.69 15 24 H 0.12 4.80 7.71 -2.91 -0.02 4.78 15 25 H 0.28 13.91 8.30 -92.71 -0.77 13.14 15 26 H 0.14 8.02 6.15 -2.91 -0.02 8.01 15 27 H 0.17 3.61 8.06 -2.91 -0.02 3.58 15 28 H 0.16 1.80 8.06 -2.91 -0.02 1.78 15 Total: -1.00 -63.87 259.74 4.94 -58.93 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.19 Total: 13.34 kcal Atomic # 6 Polarization: -60.16 SS G_CDS: 2.83 Total: -57.33 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.24 Total: -44.18 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.04 Total: -13.86 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.30 Total: 1.99 kcal Total: -63.87 4.94 -58.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.668 kcal (2) G-P(sol) polarization free energy of solvation -63.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds