Wall clock time and date at job start Mon Mar 30 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35155 * 118.98692 * 2 1 4 4 C 1.41194 * 120.61972 * 180.02562 * 3 2 1 5 5 C 1.40212 * 120.61988 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99773 * 205.32927 * 5 4 3 7 7 C 1.40425 * 120.00403 * 25.32394 * 5 4 3 8 8 N 1.30561 * 120.00016 * 15.19107 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 195.18696 * 7 5 4 10 10 H 1.48501 * 109.47245 * 60.00292 * 9 7 5 11 11 H 1.48499 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47179 * 300.00633 * 9 7 5 13 13 C 1.46537 * 118.75189 * 359.75194 * 4 3 2 14 14 C 1.46159 * 120.49711 * 179.97438 * 13 4 3 15 15 O 1.21404 * 120.00081 * 180.47505 * 14 13 4 16 16 C 1.40887 * 119.00109 * 0.46547 * 13 4 3 17 17 S 1.76021 * 130.42696 * 179.84871 * 16 13 4 18 18 C 1.75467 * 91.52340 * 179.71027 * 17 16 13 19 19 C 1.32459 * 110.82484 * 359.97438 * 18 17 16 20 20 C 1.40255 * 120.08317 * 359.53099 * 16 13 4 21 21 H 1.08997 * 109.47402 * 270.02835 * 1 2 3 22 22 H 1.09005 * 109.47060 * 30.02757 * 1 2 3 23 23 H 1.08995 * 109.47102 * 150.02311 * 1 2 3 24 24 H 1.07997 * 119.68526 * 359.97140 * 3 2 1 25 25 H 0.97003 * 119.99928 * 180.02562 * 8 7 5 26 26 H 1.08001 * 120.00185 * 0.46961 * 14 13 4 27 27 H 1.08005 * 124.59130 * 179.97438 * 18 17 16 28 28 H 1.08005 * 122.02934 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1822 0.0000 4 6 3.5733 1.2225 -0.0005 5 6 4.2528 2.4489 -0.0011 6 1 5.2539 2.5115 -0.4016 7 6 3.6318 3.5960 0.5190 8 7 2.5648 3.4804 1.2625 9 14 4.3323 5.2873 0.1474 10 1 4.3299 5.5125 -1.3204 11 1 3.5002 6.3241 0.8090 12 1 5.7242 5.3698 0.6585 13 6 4.3145 -0.0416 0.0045 14 6 5.7761 -0.0445 0.0035 15 8 6.3810 -1.0970 -0.0010 16 6 3.5971 -1.2541 -0.0004 17 16 4.1690 -2.9188 -0.0001 18 6 2.5252 -3.5328 0.0006 19 6 1.6509 -2.5379 0.0012 20 6 2.1946 -1.2412 0.0001 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6004 2.1048 -0.0005 25 1 2.1356 4.2728 1.6215 26 1 6.3180 0.8898 0.0068 27 1 2.2620 -4.5803 0.0006 28 1 0.5849 -2.7120 0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:22 Heat of formation + Delta-G solvation = -13.784821 kcal Electronic energy + Delta-G solvation = -14988.602935 eV Core-core repulsion = 12481.119242 eV Total energy + Delta-G solvation = -2507.483692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.59340 -37.17363 -35.27823 -33.17841 -31.73718 -28.93556 -26.65680 -25.62793 -23.01276 -21.73366 -19.74469 -19.60874 -17.43922 -16.05615 -15.81721 -14.98733 -14.77533 -13.85576 -13.68537 -13.36107 -12.95349 -12.72913 -12.63396 -12.40316 -11.78815 -11.70559 -11.67942 -11.36086 -11.13381 -10.89228 -10.41518 -10.16452 -10.01482 -9.65663 -9.39691 -8.35312 -8.32507 -7.51925 -7.39277 -6.71325 -4.89859 1.77136 2.13844 2.69720 2.72492 2.78501 2.81474 3.16846 3.29080 3.50467 3.86519 4.20493 5.22689 5.61832 5.73875 5.89174 5.91616 6.15696 6.24873 6.35442 6.44107 6.53641 6.58136 6.77343 6.91122 6.98041 7.16567 7.45917 7.57208 7.64685 7.71877 8.03025 8.16863 8.42959 8.81424 9.48773 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.008747 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.719706 B = 3200.383752 C = 4175.045126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.017 4.017 3 C -0.154 4.154 4 C 0.167 3.833 5 C -0.406 4.406 6 H 0.097 0.903 7 C 0.070 3.930 8 N -0.747 5.747 9 Si 0.924 3.076 10 H -0.256 1.256 11 H -0.272 1.272 12 H -0.257 1.257 13 C -0.320 4.320 14 C 0.378 3.622 15 O -0.523 6.523 16 C -0.013 4.013 17 S 0.077 5.923 18 C -0.294 4.294 19 C -0.078 4.078 20 C -0.209 4.209 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.130 0.870 25 H 0.296 0.704 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 1.030 -1.224 3.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.020 4.020 3 C -0.173 4.173 4 C 0.160 3.840 5 C -0.432 4.432 6 H 0.115 0.885 7 C -0.155 4.155 8 N -0.368 5.368 9 Si 0.746 3.254 10 H -0.180 1.180 11 H -0.196 1.196 12 H -0.180 1.180 13 C -0.330 4.330 14 C 0.247 3.753 15 O -0.407 6.407 16 C -0.129 4.129 17 S 0.340 5.660 18 C -0.427 4.427 19 C -0.108 4.108 20 C -0.215 4.215 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.148 0.852 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.610 -0.152 -1.067 1.938 hybrid contribution -1.400 1.482 0.020 2.039 sum -3.011 1.330 -1.048 3.454 Atomic orbital electron populations 1.20776 0.93206 1.01326 1.01317 1.19228 0.94130 0.91756 0.96854 1.20851 0.94370 0.96456 1.05664 1.18587 0.91562 0.90393 0.83431 1.19907 1.01962 0.91751 1.29535 0.88499 1.26336 0.94016 1.02848 0.92324 1.69673 1.14838 1.33992 1.18329 0.86064 0.80366 0.78426 0.80565 1.17960 1.19627 1.18050 1.20527 0.94069 0.90435 1.27925 1.23177 0.89080 0.91998 0.71025 1.90389 1.71523 1.36586 1.42183 1.22568 0.95577 0.95579 0.99194 1.84233 1.05289 0.98058 1.78448 1.24872 0.97612 1.01695 1.18547 1.19700 0.99009 0.91469 1.00579 1.17632 0.91463 0.92848 1.19550 0.91986 0.92309 0.92630 0.85244 0.89237 0.90390 0.83891 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.73 36.00 0.35 -1.56 15 2 C -0.02 -0.38 5.89 -104.33 -0.61 -0.99 15 3 C -0.15 -3.58 8.15 -39.56 -0.32 -3.90 15 4 C 0.17 4.02 5.73 -104.69 -0.60 3.42 15 5 C -0.41 -9.07 8.50 -38.02 -0.32 -9.39 15 6 H 0.10 2.00 6.65 -52.48 -0.35 1.66 15 7 C 0.07 1.45 5.20 -17.27 -0.09 1.36 15 8 N -0.75 -15.98 10.86 55.57 0.60 -15.38 15 9 Si 0.92 15.29 29.59 -169.99 -5.03 10.26 15 10 H -0.26 -4.22 7.11 56.52 0.40 -3.82 15 11 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 12 H -0.26 -4.24 7.11 56.52 0.40 -3.84 15 13 C -0.32 -7.91 6.08 -102.37 -0.62 -8.54 15 14 C 0.38 8.84 11.02 33.91 0.37 9.22 15 15 O -0.52 -13.13 15.84 5.45 0.09 -13.05 15 16 C -0.01 -0.31 6.34 -37.82 -0.24 -0.55 15 17 S 0.08 1.71 21.45 -107.50 -2.31 -0.59 15 18 C -0.29 -5.80 11.09 28.81 0.32 -5.48 15 19 C -0.08 -1.58 9.51 -40.61 -0.39 -1.96 15 20 C -0.21 -4.80 5.84 -106.85 -0.62 -5.43 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 0.94 8.04 -51.93 -0.42 0.52 15 23 H 0.05 0.88 7.00 -51.93 -0.36 0.51 15 24 H 0.13 2.94 6.10 -52.49 -0.32 2.62 15 25 H 0.30 5.62 8.29 -40.82 -0.34 5.28 15 26 H 0.08 1.62 6.67 -52.49 -0.35 1.27 15 27 H 0.14 2.36 8.06 -52.48 -0.42 1.94 15 28 H 0.12 2.03 7.25 -52.48 -0.38 1.65 15 LS Contribution 258.32 15.07 3.89 3.89 Total: -1.00 -26.54 258.32 -7.69 -34.23 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.16 Total: 4.42 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.78 Total: -23.79 kcal Atomic # 7 Polarization: -15.98 SS G_CDS: 0.60 Total: -15.38 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 15.29 SS G_CDS: -5.03 Total: 10.26 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.31 Total: -0.59 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.54 -7.69 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.450 kcal (2) G-P(sol) polarization free energy of solvation -26.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds