Wall clock time and date at job start Mon Mar 30 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35155 * 118.98692 * 2 1 4 4 C 1.41194 * 120.61972 * 180.02562 * 3 2 1 5 5 C 1.40212 * 120.61988 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99773 * 205.32927 * 5 4 3 7 7 C 1.40425 * 120.00403 * 25.32394 * 5 4 3 8 8 N 1.30561 * 120.00016 * 15.19107 * 7 5 4 9 9 Si 1.86800 * 120.00263 * 195.18696 * 7 5 4 10 10 H 1.48501 * 109.47245 * 60.00292 * 9 7 5 11 11 H 1.48499 * 109.47392 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47179 * 300.00633 * 9 7 5 13 13 C 1.46537 * 118.75189 * 359.75194 * 4 3 2 14 14 C 1.46159 * 120.49711 * 179.97438 * 13 4 3 15 15 O 1.21404 * 120.00081 * 180.47505 * 14 13 4 16 16 C 1.40887 * 119.00109 * 0.46547 * 13 4 3 17 17 S 1.76021 * 130.42696 * 179.84871 * 16 13 4 18 18 C 1.75467 * 91.52340 * 179.71027 * 17 16 13 19 19 C 1.32459 * 110.82484 * 359.97438 * 18 17 16 20 20 C 1.40255 * 120.08317 * 359.53099 * 16 13 4 21 21 H 1.08997 * 109.47402 * 270.02835 * 1 2 3 22 22 H 1.09005 * 109.47060 * 30.02757 * 1 2 3 23 23 H 1.08995 * 109.47102 * 150.02311 * 1 2 3 24 24 H 1.07997 * 119.68526 * 359.97140 * 3 2 1 25 25 H 0.97003 * 119.99928 * 180.02562 * 8 7 5 26 26 H 1.08001 * 120.00185 * 0.46961 * 14 13 4 27 27 H 1.08005 * 124.59130 * 179.97438 * 18 17 16 28 28 H 1.08005 * 122.02934 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1822 0.0000 4 6 3.5733 1.2225 -0.0005 5 6 4.2528 2.4489 -0.0011 6 1 5.2539 2.5115 -0.4016 7 6 3.6318 3.5960 0.5190 8 7 2.5648 3.4804 1.2625 9 14 4.3323 5.2873 0.1474 10 1 4.3299 5.5125 -1.3204 11 1 3.5002 6.3241 0.8090 12 1 5.7242 5.3698 0.6585 13 6 4.3145 -0.0416 0.0045 14 6 5.7761 -0.0445 0.0035 15 8 6.3810 -1.0970 -0.0010 16 6 3.5971 -1.2541 -0.0004 17 16 4.1690 -2.9188 -0.0001 18 6 2.5252 -3.5328 0.0006 19 6 1.6509 -2.5379 0.0012 20 6 2.1946 -1.2412 0.0001 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8901 -0.5134 24 1 1.6004 2.1048 -0.0005 25 1 2.1356 4.2728 1.6215 26 1 6.3180 0.8898 0.0068 27 1 2.2620 -4.5803 0.0006 28 1 0.5849 -2.7120 0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396344121.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:22 Heat of formation + Delta-G solvation = -26.800100 kcal Electronic energy + Delta-G solvation = -14989.167320 eV Core-core repulsion = 12481.119242 eV Total energy + Delta-G solvation = -2508.048077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29863 -38.96729 -36.93206 -34.79702 -33.38344 -30.62507 -28.24212 -27.31549 -24.69170 -23.41544 -21.43769 -21.28293 -19.12052 -17.76089 -17.42794 -16.61858 -16.46028 -15.54900 -15.22680 -15.07538 -14.64007 -14.37649 -14.24165 -13.91223 -13.36062 -13.26765 -13.12358 -12.86908 -12.65958 -12.37425 -11.97457 -11.78855 -11.60300 -11.33657 -11.00537 -10.15189 -10.04114 -9.22544 -9.01149 -8.43160 -6.63346 0.08716 0.38858 0.99898 1.32840 1.41898 1.51376 1.55069 1.72348 2.10529 2.12150 2.57691 3.48675 3.91614 4.17265 4.36607 4.50568 4.61491 4.70218 4.87261 4.90287 4.95193 5.00870 5.15008 5.28379 5.32587 5.49985 5.74519 5.87760 5.97212 6.03024 6.33014 6.45875 6.71544 7.01830 7.93111 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.008747 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.719706 B = 3200.383752 C = 4175.045126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.024 4.024 3 C -0.173 4.173 4 C 0.140 3.860 5 C -0.418 4.418 6 H 0.106 0.894 7 C 0.038 3.962 8 N -0.768 5.768 9 Si 0.995 3.005 10 H -0.253 1.253 11 H -0.261 1.261 12 H -0.254 1.254 13 C -0.356 4.356 14 C 0.374 3.626 15 O -0.549 6.549 16 C -0.047 4.047 17 S 0.051 5.949 18 C -0.278 4.278 19 C -0.085 4.085 20 C -0.225 4.225 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.129 0.871 25 H 0.308 0.692 26 H 0.104 0.896 27 H 0.181 0.819 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 1.736 -1.288 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.027 4.027 3 C -0.192 4.192 4 C 0.134 3.866 5 C -0.443 4.443 6 H 0.124 0.876 7 C -0.186 4.186 8 N -0.389 5.389 9 Si 0.813 3.187 10 H -0.177 1.177 11 H -0.185 1.185 12 H -0.178 1.178 13 C -0.366 4.366 14 C 0.245 3.755 15 O -0.436 6.436 16 C -0.163 4.163 17 S 0.313 5.687 18 C -0.411 4.411 19 C -0.114 4.114 20 C -0.232 4.232 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.147 0.853 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.198 0.802 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.927 0.546 -1.126 3.184 hybrid contribution -1.075 1.265 0.072 1.662 sum -4.003 1.812 -1.053 4.518 Atomic orbital electron populations 1.20799 0.89913 1.02896 1.02438 1.19697 0.96641 0.91038 0.95288 1.20953 0.94226 0.97047 1.07023 1.18931 0.92399 0.90926 0.84368 1.20280 1.02597 0.92163 1.29260 0.87630 1.27173 0.94049 1.05868 0.91483 1.69680 1.15383 1.35774 1.18087 0.85011 0.79668 0.73643 0.80331 1.17727 1.18495 1.17778 1.20799 0.94765 0.91149 1.29844 1.23460 0.89039 0.92469 0.70486 1.90359 1.71794 1.37512 1.43899 1.22970 0.96802 0.96348 1.00197 1.84213 1.07996 0.97736 1.78709 1.25258 0.95507 1.03441 1.16849 1.19977 1.00886 0.90195 1.00341 1.18111 0.91174 0.94495 1.19423 0.90869 0.91145 0.90683 0.85307 0.87997 0.87960 0.80174 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.39 9.73 71.23 0.69 -2.70 15 2 C -0.02 -1.05 5.89 -19.67 -0.12 -1.16 15 3 C -0.17 -8.11 8.15 22.29 0.18 -7.92 15 4 C 0.14 6.91 5.73 -19.91 -0.11 6.80 15 5 C -0.42 -18.77 8.50 23.28 0.20 -18.58 15 6 H 0.11 4.38 6.65 -2.91 -0.02 4.36 15 7 C 0.04 1.54 5.20 85.41 0.44 1.98 15 8 N -0.77 -32.31 10.86 21.91 0.24 -32.08 15 9 Si 1.00 29.91 29.59 68.60 2.03 31.94 15 10 H -0.25 -7.51 7.11 99.48 0.71 -6.80 15 11 H -0.26 -7.36 7.11 99.48 0.71 -6.65 15 12 H -0.25 -7.51 7.11 99.48 0.71 -6.81 15 13 C -0.36 -18.18 6.08 -18.41 -0.11 -18.29 15 14 C 0.37 18.05 11.02 69.88 0.77 18.82 15 15 O -0.55 -28.49 15.84 -3.42 -0.05 -28.54 15 16 C -0.05 -2.34 6.34 23.41 0.15 -2.19 15 17 S 0.05 2.28 21.45 -56.49 -1.21 1.07 15 18 C -0.28 -10.34 11.09 66.69 0.74 -9.60 15 19 C -0.08 -3.26 9.51 21.72 0.21 -3.05 15 20 C -0.23 -10.27 5.84 -21.31 -0.12 -10.39 15 21 H 0.07 2.23 8.14 -2.39 -0.02 2.22 15 22 H 0.07 2.11 8.04 -2.38 -0.02 2.09 15 23 H 0.07 2.13 7.00 -2.39 -0.02 2.12 15 24 H 0.13 5.89 6.10 -2.91 -0.02 5.87 15 25 H 0.31 11.30 8.29 -92.71 -0.77 10.53 15 26 H 0.10 4.32 6.67 -2.91 -0.02 4.30 15 27 H 0.18 5.27 8.06 -2.91 -0.02 5.24 15 28 H 0.15 4.69 7.25 -2.91 -0.02 4.66 15 Total: -1.00 -57.87 258.32 5.11 -52.75 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.20 Total: 21.13 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 2.91 Total: -46.28 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.24 Total: -32.08 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.54 kcal Atomic # 14 Polarization: 29.91 SS G_CDS: 2.03 Total: 31.94 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.21 Total: 1.07 kcal Total: -57.87 5.11 -52.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344121.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.954 kcal (2) G-P(sol) polarization free energy of solvation -57.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds