Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39164 * 119.33766 * 2 1 4 4 S 1.76108 * 130.42982 * 359.97438 * 3 2 1 5 5 C 1.75495 * 91.49832 * 180.02562 * 4 3 2 6 6 C 1.32898 * 110.66328 * 0.02562 * 5 4 3 7 7 C 1.39752 * 115.86433 * 359.97438 * 6 5 4 8 8 C 1.48004 * 128.97805 * 179.97438 * 7 6 5 9 9 C 1.40708 * 120.28133 * 0.03278 * 8 7 6 10 10 H 1.07999 * 120.00127 * 24.83185 * 9 8 7 11 11 C 1.39990 * 120.00112 * 204.83530 * 9 8 7 12 12 N 1.30840 * 119.99713 * 17.69186 * 11 9 8 13 13 Si 1.86795 * 120.00204 * 197.69154 * 11 9 8 14 14 H 1.48501 * 109.47037 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47264 * 119.99795 * 13 11 9 16 16 H 1.48503 * 109.47576 * 240.00042 * 13 11 9 17 17 C 1.39842 * 119.43609 * 179.75424 * 8 7 6 18 18 C 1.39486 * 119.95725 * 0.52521 * 17 8 7 19 19 C 1.46948 * 119.66962 * 179.72357 * 18 17 8 20 20 O 1.21296 * 119.99871 * 359.72747 * 19 18 17 21 21 H 1.08994 * 109.47388 * 269.97883 * 1 2 3 22 22 H 1.09002 * 109.47504 * 29.98081 * 1 2 3 23 23 H 1.08998 * 109.47053 * 149.97713 * 1 2 3 24 24 H 1.07999 * 124.67081 * 179.97438 * 5 4 3 25 25 H 1.08004 * 122.06829 * 180.02562 * 6 5 4 26 26 H 0.96999 * 120.00054 * 179.97438 * 12 11 9 27 27 H 1.08003 * 120.02014 * 180.25277 * 17 8 7 28 28 H 1.08001 * 119.99988 * 179.72336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2132 0.0000 4 16 1.5798 2.8656 -0.0006 5 6 3.2100 3.5153 -0.0009 6 6 4.1060 2.5339 -0.0011 7 6 3.5884 1.2357 -0.0005 8 6 4.3122 -0.0552 -0.0011 9 6 5.7191 -0.0798 -0.0017 10 1 6.2740 0.7594 0.3910 11 6 6.3995 -1.1920 -0.5114 12 7 5.7764 -2.0404 -1.2884 13 14 8.1969 -1.4647 -0.0822 14 1 8.6651 -0.3709 0.8065 15 1 8.3472 -2.7671 0.6154 16 1 9.0073 -1.4733 -1.3266 17 6 3.5861 -1.2503 0.0050 18 6 2.1916 -1.2180 0.0003 19 6 1.4349 -2.4777 0.0006 20 8 2.0231 -3.5385 -0.0003 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 3.4519 4.5679 -0.0017 25 1 5.1686 2.7275 -0.0009 26 1 6.2480 -2.8109 -1.6419 27 1 4.1047 -2.1977 0.0087 28 1 0.3550 -2.4590 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396344793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = -7.632613 kcal Electronic energy + Delta-G solvation = -14963.455982 eV Core-core repulsion = 12456.239069 eV Total energy + Delta-G solvation = -2507.216913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.84650 -37.49174 -34.58531 -34.24365 -31.07528 -28.71281 -27.61021 -24.39593 -23.91613 -21.33154 -20.62435 -18.78962 -17.87454 -16.24506 -15.62962 -15.17390 -14.52997 -14.29236 -13.81630 -13.67470 -12.99600 -12.83174 -12.65533 -12.05492 -11.89280 -11.79579 -11.70002 -11.33805 -11.05457 -10.71532 -10.57291 -10.18383 -9.92767 -9.61458 -9.42306 -8.88415 -8.30085 -7.44069 -7.16243 -6.87542 -4.56585 1.34045 2.50309 2.58853 2.67851 2.89746 2.95504 2.98752 3.02806 3.65918 3.73744 4.29538 5.04209 5.28010 5.74768 5.82249 5.86281 6.10335 6.21469 6.38233 6.42308 6.44598 6.68857 6.78526 6.96172 6.98856 7.16368 7.51782 7.54800 7.64180 7.78283 8.16292 8.25815 8.40542 8.52084 9.73749 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.010077 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.286548 B = 2777.898039 C = 4125.302183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.164 4.164 3 C -0.073 4.073 4 S 0.002 5.998 5 C -0.272 4.272 6 C -0.061 4.061 7 C -0.178 4.178 8 C 0.135 3.865 9 C -0.417 4.417 10 H 0.090 0.910 11 C 0.067 3.933 12 N -0.756 5.756 13 Si 0.919 3.081 14 H -0.255 1.255 15 H -0.266 1.266 16 H -0.269 1.269 17 C -0.119 4.119 18 C -0.136 4.136 19 C 0.380 3.620 20 O -0.474 6.474 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.146 0.854 25 H 0.125 0.875 26 H 0.292 0.708 27 H 0.136 0.864 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 3.368 1.424 4.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.172 4.172 3 C -0.188 4.188 4 S 0.263 5.737 5 C -0.405 4.405 6 C -0.090 4.090 7 C -0.184 4.184 8 C 0.129 3.871 9 C -0.444 4.444 10 H 0.108 0.892 11 C -0.156 4.156 12 N -0.378 5.378 13 Si 0.742 3.258 14 H -0.179 1.179 15 H -0.191 1.191 16 H -0.194 1.194 17 C -0.141 4.141 18 C -0.139 4.139 19 C 0.240 3.760 20 O -0.349 6.349 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.163 0.837 25 H 0.143 0.857 26 H 0.103 0.897 27 H 0.154 0.846 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.076 3.346 1.263 5.423 hybrid contribution 2.132 -0.494 0.001 2.188 sum -1.944 2.853 1.264 3.676 Atomic orbital electron populations 1.20565 0.92992 1.01116 1.00652 1.18363 0.93544 0.89855 1.15438 1.21957 0.95974 0.94722 1.06104 1.83409 1.09310 0.99031 1.81999 1.24610 0.94831 1.01570 1.19479 1.19716 0.99593 0.91367 0.98346 1.19188 0.91206 0.93420 1.14604 1.18390 0.92614 0.88424 0.87642 1.19759 0.91508 1.01880 1.31236 0.89172 1.26176 1.02161 0.94574 0.92681 1.69804 1.39178 1.09900 1.18941 0.86060 0.80182 0.79911 0.79679 1.17875 1.19101 1.19421 1.21468 0.91161 0.98896 1.02583 1.20047 0.95002 0.93054 1.05827 1.24079 0.94327 0.87575 0.69990 1.90457 1.74808 1.33801 1.35852 0.92888 0.92993 0.92607 0.83663 0.85702 0.89667 0.84628 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 9.31 36.00 0.34 -1.27 15 2 C -0.16 -3.49 5.95 -103.72 -0.62 -4.11 15 3 C -0.07 -1.64 6.28 -38.59 -0.24 -1.88 15 4 S 0.00 0.04 22.52 -107.50 -2.42 -2.38 15 5 C -0.27 -5.18 11.12 28.89 0.32 -4.86 15 6 C -0.06 -1.29 9.74 -40.86 -0.40 -1.69 15 7 C -0.18 -4.25 6.02 -104.68 -0.63 -4.88 15 8 C 0.13 3.41 5.75 -104.36 -0.60 2.81 15 9 C -0.42 -10.16 8.81 -37.99 -0.33 -10.50 15 10 H 0.09 2.07 7.48 -52.49 -0.39 1.68 15 11 C 0.07 1.55 5.13 -17.32 -0.09 1.46 15 12 N -0.76 -18.38 10.98 55.55 0.61 -17.77 15 13 Si 0.92 17.13 29.60 -169.99 -5.03 12.10 15 14 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 17 C -0.12 -3.01 8.19 -38.52 -0.32 -3.33 15 18 C -0.14 -3.06 5.84 -105.35 -0.62 -3.68 15 19 C 0.38 7.55 10.82 34.26 0.37 7.93 15 20 O -0.47 -10.87 17.11 5.54 0.09 -10.77 15 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.05 0.84 7.52 -51.93 -0.39 0.45 15 23 H 0.06 0.81 6.20 -51.93 -0.32 0.49 15 24 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 25 H 0.13 2.46 7.68 -52.48 -0.40 2.05 15 26 H 0.29 6.40 8.30 -40.82 -0.34 6.06 15 27 H 0.14 3.62 5.70 -52.48 -0.30 3.32 15 28 H 0.09 1.32 6.23 -52.49 -0.33 1.00 15 LS Contribution 259.79 15.07 3.91 3.91 Total: -1.00 -27.16 259.79 -7.76 -34.92 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -2.11 Total: 3.98 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.82 Total: -23.99 kcal Atomic # 7 Polarization: -18.38 SS G_CDS: 0.61 Total: -17.77 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.42 Total: -2.38 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.16 -7.76 -34.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.292 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds