Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39164 * 119.33766 * 2 1 4 4 S 1.76108 * 130.42982 * 359.97438 * 3 2 1 5 5 C 1.75495 * 91.49832 * 180.02562 * 4 3 2 6 6 C 1.32898 * 110.66328 * 0.02562 * 5 4 3 7 7 C 1.39752 * 115.86433 * 359.97438 * 6 5 4 8 8 C 1.48004 * 128.97805 * 179.97438 * 7 6 5 9 9 C 1.40708 * 120.28133 * 0.03278 * 8 7 6 10 10 H 1.07999 * 120.00127 * 24.83185 * 9 8 7 11 11 C 1.39990 * 120.00112 * 204.83530 * 9 8 7 12 12 N 1.30840 * 119.99713 * 17.69186 * 11 9 8 13 13 Si 1.86795 * 120.00204 * 197.69154 * 11 9 8 14 14 H 1.48501 * 109.47037 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47264 * 119.99795 * 13 11 9 16 16 H 1.48503 * 109.47576 * 240.00042 * 13 11 9 17 17 C 1.39842 * 119.43609 * 179.75424 * 8 7 6 18 18 C 1.39486 * 119.95725 * 0.52521 * 17 8 7 19 19 C 1.46948 * 119.66962 * 179.72357 * 18 17 8 20 20 O 1.21296 * 119.99871 * 359.72747 * 19 18 17 21 21 H 1.08994 * 109.47388 * 269.97883 * 1 2 3 22 22 H 1.09002 * 109.47504 * 29.98081 * 1 2 3 23 23 H 1.08998 * 109.47053 * 149.97713 * 1 2 3 24 24 H 1.07999 * 124.67081 * 179.97438 * 5 4 3 25 25 H 1.08004 * 122.06829 * 180.02562 * 6 5 4 26 26 H 0.96999 * 120.00054 * 179.97438 * 12 11 9 27 27 H 1.08003 * 120.02014 * 180.25277 * 17 8 7 28 28 H 1.08001 * 119.99988 * 179.72336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2132 0.0000 4 16 1.5798 2.8656 -0.0006 5 6 3.2100 3.5153 -0.0009 6 6 4.1060 2.5339 -0.0011 7 6 3.5884 1.2357 -0.0005 8 6 4.3122 -0.0552 -0.0011 9 6 5.7191 -0.0798 -0.0017 10 1 6.2740 0.7594 0.3910 11 6 6.3995 -1.1920 -0.5114 12 7 5.7764 -2.0404 -1.2884 13 14 8.1969 -1.4647 -0.0822 14 1 8.6651 -0.3709 0.8065 15 1 8.3472 -2.7671 0.6154 16 1 9.0073 -1.4733 -1.3266 17 6 3.5861 -1.2503 0.0050 18 6 2.1916 -1.2180 0.0003 19 6 1.4349 -2.4777 0.0006 20 8 2.0231 -3.5385 -0.0003 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 3.4519 4.5679 -0.0017 25 1 5.1686 2.7275 -0.0009 26 1 6.2480 -2.8109 -1.6419 27 1 4.1047 -2.1977 0.0087 28 1 0.3550 -2.4590 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396344793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = -21.957868 kcal Electronic energy + Delta-G solvation = -14964.077172 eV Core-core repulsion = 12456.239069 eV Total energy + Delta-G solvation = -2507.838102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52774 -39.18835 -36.27487 -35.89203 -32.74504 -30.39718 -29.20872 -26.04592 -25.57019 -22.96749 -22.30634 -20.47105 -19.56699 -17.88627 -17.29937 -16.76307 -16.19343 -15.91110 -15.49383 -15.33186 -14.61998 -14.42232 -14.24887 -13.58876 -13.45382 -13.32812 -13.27294 -12.88183 -12.62255 -12.33420 -12.16044 -11.80357 -11.60212 -11.27944 -11.09944 -10.51323 -9.98065 -9.14902 -8.84053 -8.50663 -6.34893 -0.35092 0.80957 0.95782 1.07762 1.32505 1.35038 1.46336 1.51147 2.05284 2.11058 2.60243 3.49729 3.55614 4.20875 4.31368 4.37493 4.58291 4.76492 4.80806 4.92634 4.98419 5.04200 5.19969 5.25745 5.34688 5.47116 5.78155 5.84529 5.93807 6.03298 6.42540 6.63859 6.67097 6.77591 8.09810 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.010077 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.286548 B = 2777.898039 C = 4125.302183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.148 4.148 3 C -0.117 4.117 4 S 0.067 5.933 5 C -0.244 4.244 6 C -0.097 4.097 7 C -0.188 4.188 8 C 0.102 3.898 9 C -0.458 4.458 10 H 0.090 0.910 11 C 0.030 3.970 12 N -0.802 5.802 13 Si 0.989 3.011 14 H -0.250 1.250 15 H -0.266 1.266 16 H -0.261 1.261 17 C -0.161 4.161 18 C -0.155 4.155 19 C 0.389 3.611 20 O -0.510 6.510 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.185 0.815 25 H 0.131 0.869 26 H 0.295 0.705 27 H 0.107 0.893 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 5.342 1.733 7.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C -0.232 4.232 4 S 0.328 5.672 5 C -0.377 4.377 6 C -0.126 4.126 7 C -0.195 4.195 8 C 0.098 3.902 9 C -0.485 4.485 10 H 0.108 0.892 11 C -0.188 4.188 12 N -0.425 5.425 13 Si 0.809 3.191 14 H -0.173 1.173 15 H -0.190 1.190 16 H -0.185 1.185 17 C -0.184 4.184 18 C -0.159 4.159 19 C 0.251 3.749 20 O -0.387 6.387 21 H 0.094 0.906 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.202 0.798 25 H 0.149 0.851 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.102 5.341 1.573 8.260 hybrid contribution 2.464 -0.826 -0.077 2.600 sum -3.638 4.514 1.495 5.988 Atomic orbital electron populations 1.20694 0.89116 1.02966 1.02631 1.18959 0.96260 0.88896 1.11452 1.22487 0.96049 0.97492 1.07137 1.83136 1.07997 0.95537 1.80493 1.25235 0.94811 1.03090 1.14563 1.19842 1.00690 0.90974 1.01144 1.19643 0.92458 0.94049 1.13353 1.18724 0.93494 0.89320 0.88705 1.19913 0.91753 1.03117 1.33713 0.89185 1.27010 1.06218 0.93795 0.91824 1.69877 1.41013 1.10866 1.20739 0.85036 0.74917 0.79616 0.79562 1.17303 1.19037 1.18516 1.21317 0.92734 0.97921 1.06398 1.20498 0.94477 0.95309 1.05570 1.24712 0.96333 0.85714 0.68106 1.90454 1.75997 1.34778 1.37440 0.90611 0.92037 0.89942 0.79752 0.85136 0.89407 0.87472 0.83483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.82 9.31 71.24 0.66 -2.16 15 2 C -0.15 -6.06 5.95 -19.28 -0.11 -6.17 15 3 C -0.12 -5.08 6.28 22.91 0.14 -4.93 15 4 S 0.07 2.31 22.52 -56.49 -1.27 1.03 15 5 C -0.24 -8.45 11.12 66.64 0.74 -7.71 15 6 C -0.10 -4.04 9.74 21.46 0.21 -3.83 15 7 C -0.19 -9.09 6.02 -19.90 -0.12 -9.21 15 8 C 0.10 5.48 5.75 -19.70 -0.11 5.37 15 9 C -0.46 -23.78 8.81 23.30 0.21 -23.57 15 10 H 0.09 4.41 7.48 -2.91 -0.02 4.39 15 11 C 0.03 1.46 5.13 85.27 0.44 1.90 15 12 N -0.80 -41.83 10.98 21.84 0.24 -41.59 15 13 Si 0.99 36.86 29.60 68.60 2.03 38.89 15 14 H -0.25 -8.92 7.11 99.48 0.71 -8.22 15 15 H -0.27 -9.72 7.11 99.48 0.71 -9.02 15 16 H -0.26 -9.22 7.11 99.48 0.71 -8.51 15 17 C -0.16 -8.64 8.19 22.96 0.19 -8.46 15 18 C -0.15 -7.05 5.84 -20.34 -0.12 -7.17 15 19 C 0.39 15.06 10.82 70.10 0.76 15.82 15 20 O -0.51 -23.74 17.11 -3.08 -0.05 -23.79 15 21 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.06 1.69 7.52 -2.39 -0.02 1.67 15 23 H 0.08 1.96 6.20 -2.39 -0.01 1.94 15 24 H 0.19 4.91 8.06 -2.91 -0.02 4.89 15 25 H 0.13 5.16 7.68 -2.91 -0.02 5.14 15 26 H 0.29 13.92 8.30 -92.71 -0.77 13.15 15 27 H 0.11 6.24 5.70 -2.91 -0.02 6.22 15 28 H 0.15 3.92 6.23 -2.91 -0.02 3.90 15 Total: -1.00 -63.15 259.79 5.02 -58.13 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.20 Total: 17.46 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 2.88 Total: -50.13 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.24 Total: -41.59 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.27 Total: 1.03 kcal Total: -63.15 5.02 -58.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396344793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.171 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds