Wall clock time and date at job start Mon Mar 30 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36916 * 122.47852 * 2 1 4 4 C 1.39870 * 124.82157 * 359.97328 * 3 2 1 5 5 H 1.07995 * 120.00282 * 359.97438 * 4 3 2 6 6 C 1.40229 * 119.99877 * 180.02562 * 4 3 2 7 7 N 1.30732 * 120.00001 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00113 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47116 * 59.99677 * 8 6 4 10 10 H 1.48501 * 109.47417 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47310 * 299.99992 * 8 6 4 12 12 S 1.75455 * 110.35352 * 179.97438 * 3 2 1 13 13 C 1.75966 * 91.78739 * 359.97438 * 12 3 2 14 14 C 1.39859 * 122.48413 * 179.97438 * 2 1 3 15 15 C 1.41804 * 128.47182 * 0.02746 * 14 2 1 16 16 C 1.37293 * 120.77990 * 179.97438 * 15 14 2 17 17 C 1.38304 * 120.78671 * 359.75998 * 16 15 14 18 18 C 1.39630 * 120.03286 * 0.51435 * 17 16 15 19 19 C 1.46676 * 120.00583 * 179.73932 * 18 17 16 20 20 O 1.21324 * 120.00196 * 359.73023 * 19 18 17 21 21 H 1.08998 * 109.47317 * 270.02766 * 1 2 3 22 22 H 1.09000 * 109.46979 * 30.02911 * 1 2 3 23 23 H 1.09001 * 109.46546 * 150.02827 * 1 2 3 24 24 H 0.97004 * 120.00135 * 180.02562 * 7 6 4 25 25 H 1.08006 * 119.60661 * 359.97438 * 15 14 2 26 26 H 1.07992 * 119.60736 * 179.97438 * 16 15 14 27 27 H 1.08002 * 119.98391 * 180.28572 * 17 16 15 28 28 H 1.08009 * 120.00169 * 179.45207 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2422 1.1550 0.0000 4 6 1.7024 2.4454 -0.0005 5 1 0.6313 2.5826 -0.0014 6 6 2.5522 3.5608 -0.0010 7 7 3.8490 3.3947 -0.0005 8 14 1.8314 5.2841 -0.0025 9 1 0.9941 5.4715 1.2096 10 1 2.9320 6.2811 -0.0022 11 1 0.9950 5.4699 -1.2154 12 16 3.9576 0.7865 0.0007 13 6 3.6418 -0.9446 0.0018 14 6 2.2581 -1.1798 0.0005 15 6 1.7954 -2.5202 0.0006 16 6 2.6812 -3.5692 0.0006 17 6 4.0457 -3.3436 -0.0044 18 6 4.5380 -2.0370 0.0013 19 6 5.9852 -1.7984 0.0017 20 8 6.7547 -2.7364 0.0021 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3632 -0.8903 -0.5134 24 1 4.4368 4.1663 -0.0004 25 1 0.7337 -2.7182 0.0006 26 1 2.3080 -4.5826 0.0011 27 1 4.7308 -4.1785 -0.0090 28 1 6.3659 -0.7876 -0.0028 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345194.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:21 Heat of formation + Delta-G solvation = -39.091549 kcal Electronic energy + Delta-G solvation = -14747.634273 eV Core-core repulsion = 12239.053198 eV Total energy + Delta-G solvation = -2508.581074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56164 -39.29676 -36.94357 -35.17361 -32.12448 -30.97235 -29.44110 -26.94272 -24.99673 -23.63615 -22.18670 -19.90863 -19.38323 -18.04046 -17.27009 -17.16956 -16.06308 -15.72393 -15.36533 -15.27098 -15.12645 -14.52591 -14.29068 -13.47299 -13.39968 -13.29976 -13.17646 -13.12966 -12.33443 -12.13121 -11.94383 -11.88554 -11.69716 -11.12531 -11.01153 -10.63557 -10.15667 -9.25718 -8.91381 -8.25786 -6.47026 -0.30767 0.48321 1.17600 1.33896 1.39304 1.53003 1.53589 1.86280 1.96213 2.14168 2.88497 3.23500 3.40610 4.12310 4.31673 4.40165 4.54718 4.73536 4.83660 4.90943 4.98165 5.12339 5.17948 5.34649 5.39715 5.48013 5.66181 5.75561 5.96581 6.12000 6.26036 6.39216 6.52679 6.61977 7.95868 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.008027 C = 0.006348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.788972 B = 3487.410415 C = 4410.054382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.363 4.363 3 C 0.025 3.975 4 C -0.404 4.404 5 H 0.107 0.893 6 C 0.019 3.981 7 N -0.799 5.799 8 Si 1.008 2.992 9 H -0.255 1.255 10 H -0.263 1.263 11 H -0.255 1.255 12 S 0.130 5.870 13 C -0.237 4.237 14 C -0.016 4.016 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.155 4.155 19 C 0.394 3.606 20 O -0.498 6.498 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.313 0.687 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 0.076 -0.067 2.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.370 4.370 3 C -0.094 4.094 4 C -0.437 4.437 5 H 0.125 0.875 6 C -0.200 4.200 7 N -0.425 5.425 8 Si 0.826 3.174 9 H -0.179 1.179 10 H -0.187 1.187 11 H -0.179 1.179 12 S 0.392 5.608 13 C -0.353 4.353 14 C -0.023 4.023 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.161 4.161 19 C 0.256 3.744 20 O -0.375 6.375 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.147 0.853 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.526 0.615 -0.069 0.812 hybrid contribution -1.435 -0.130 0.016 1.441 sum -1.961 0.484 -0.053 2.020 Atomic orbital electron populations 1.19792 0.90449 1.00192 0.99315 1.18721 0.96602 0.90044 1.31613 1.21627 0.94583 0.96920 0.96248 1.19648 0.96514 0.88918 1.38596 0.87502 1.27233 0.94587 1.07059 0.91123 1.68572 1.05222 1.36535 1.32213 0.84790 0.78960 0.73081 0.80519 1.17945 1.18651 1.17910 1.84617 1.07074 0.90380 1.78746 1.24181 0.97142 1.01637 1.12325 1.18191 0.91678 0.94317 0.98141 1.21348 0.99889 0.90652 1.02106 1.20913 0.92460 0.99390 1.01440 1.21183 0.96156 0.94922 1.02070 1.20156 0.94600 0.93127 1.08197 1.24102 0.87655 0.94229 0.68394 1.90425 1.60425 1.48891 1.37764 0.94458 0.93481 0.93169 0.87369 0.85326 0.83323 0.85137 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.54 9.59 71.24 0.68 -0.86 15 2 C -0.36 -17.18 5.95 -19.78 -0.12 -17.30 15 3 C 0.03 1.24 6.11 22.35 0.14 1.38 15 4 C -0.40 -18.92 8.83 23.15 0.20 -18.71 15 5 H 0.11 4.70 6.66 -2.91 -0.02 4.68 15 6 C 0.02 0.81 5.50 85.34 0.47 1.28 15 7 N -0.80 -35.34 10.58 21.88 0.23 -35.11 15 8 Si 1.01 32.03 29.56 68.60 2.03 34.06 15 9 H -0.26 -7.95 7.11 99.48 0.71 -7.24 15 10 H -0.26 -7.86 7.11 99.48 0.71 -7.15 15 11 H -0.26 -7.92 7.11 99.48 0.71 -7.21 15 12 S 0.13 6.11 19.54 -56.49 -1.10 5.00 15 13 C -0.24 -10.92 6.37 23.54 0.15 -10.77 15 14 C -0.02 -0.72 5.84 -21.49 -0.13 -0.85 15 15 C -0.12 -4.67 9.67 22.93 0.22 -4.44 15 16 C -0.12 -4.25 9.96 22.06 0.22 -4.03 15 17 C -0.12 -4.66 9.59 22.62 0.22 -4.45 15 18 C -0.15 -6.46 5.89 -19.99 -0.12 -6.58 15 19 C 0.39 15.13 11.29 70.03 0.79 15.92 15 20 O -0.50 -20.37 17.13 -3.17 -0.05 -20.42 15 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.05 1.82 6.89 -2.39 -0.02 1.80 15 23 H 0.05 1.79 7.32 -2.39 -0.02 1.77 15 24 H 0.31 12.26 8.29 -92.71 -0.77 11.50 15 25 H 0.13 4.34 7.38 -2.91 -0.02 4.32 15 26 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.13 4.51 7.62 -2.91 -0.02 4.49 15 28 H 0.11 3.84 7.67 -2.91 -0.02 3.82 15 Total: -1.00 -54.80 260.75 5.02 -49.77 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.19 Total: 16.08 kcal Atomic # 6 Polarization: -52.12 SS G_CDS: 2.73 Total: -49.39 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.23 Total: -35.11 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 32.03 SS G_CDS: 2.03 Total: 34.06 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.10 Total: 5.00 kcal Total: -54.80 5.02 -49.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345194.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.682 kcal (2) G-P(sol) polarization free energy of solvation -54.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds