Wall clock time and date at job start Mon Mar 30 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32898 * 122.06218 * 2 1 4 4 S 1.75502 * 110.65804 * 179.97438 * 3 2 1 5 5 C 1.76108 * 91.49715 * 0.02562 * 4 3 2 6 6 C 1.39160 * 130.42470 * 180.02562 * 5 4 3 7 7 C 1.39731 * 121.32344 * 179.97438 * 6 5 4 8 8 C 1.46955 * 119.66744 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99620 * 180.02562 * 8 7 6 10 10 C 1.39484 * 120.66047 * 359.75106 * 7 6 5 11 11 C 1.39837 * 119.95984 * 0.50370 * 10 7 6 12 12 C 1.40709 * 120.28094 * 179.77118 * 11 10 7 13 13 H 1.08004 * 120.00184 * 146.45711 * 12 11 10 14 14 C 1.39988 * 120.00159 * 326.72903 * 12 11 10 15 15 N 1.30840 * 119.99857 * 350.25535 * 14 12 11 16 16 Si 1.86800 * 119.99947 * 170.25755 * 14 12 11 17 17 H 1.48500 * 109.47113 * 59.99870 * 16 14 12 18 18 H 1.48500 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47028 * 300.00139 * 16 14 12 20 20 C 1.39751 * 122.06659 * 179.97438 * 2 1 3 21 21 H 1.09003 * 109.46845 * 263.83451 * 1 2 3 22 22 H 1.08992 * 109.47304 * 23.83541 * 1 2 3 23 23 H 1.09000 * 109.46841 * 143.83448 * 1 2 3 24 24 H 1.07995 * 124.67328 * 359.95893 * 3 2 1 25 25 H 1.08004 * 119.33944 * 359.95849 * 6 5 4 26 26 H 1.07994 * 119.99999 * 0.02562 * 8 7 6 27 27 H 1.08006 * 120.01880 * 180.28081 * 10 7 6 28 28 H 0.96995 * 119.99448 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2125 1.1263 0.0000 4 16 3.9329 0.7793 0.0007 5 6 3.6299 -0.9556 0.0002 6 6 4.5182 -2.0267 0.0009 7 6 4.0631 -3.3479 0.0009 8 6 5.0335 -4.4515 0.0010 9 8 4.6450 -5.6005 0.0005 10 6 2.6970 -3.6296 0.0054 11 6 1.7684 -2.5841 -0.0007 12 6 0.3887 -2.8606 -0.0011 13 1 -0.2946 -2.1999 0.5118 14 6 -0.0976 -3.9951 -0.6614 15 7 0.6950 -4.6920 -1.4347 16 14 -1.8783 -4.5139 -0.4386 17 1 -2.7733 -3.4210 -0.8965 18 1 -2.1414 -5.7367 -1.2391 19 1 -2.1358 -4.7961 0.9964 20 6 2.2490 -1.1843 0.0005 21 1 -0.3633 -0.1104 1.0218 22 1 -0.3633 0.9399 -0.4153 23 1 -0.3633 -0.8297 -0.6065 24 1 1.7860 2.1184 -0.0006 25 1 5.5808 -1.8331 0.0012 26 1 6.0924 -4.2394 0.0016 27 1 2.3567 -4.6546 0.0099 28 1 0.3581 -5.4783 -1.8919 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:15 Heat of formation + Delta-G solvation = -19.662739 kcal Electronic energy + Delta-G solvation = -15004.640101 eV Core-core repulsion = 12496.901523 eV Total energy + Delta-G solvation = -2507.738578 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45801 -39.37059 -36.45420 -35.61932 -31.94843 -30.92801 -28.71282 -27.07665 -25.48492 -23.01598 -22.08968 -20.05317 -19.61130 -17.76122 -17.20899 -16.83311 -16.33542 -15.88017 -15.41014 -15.20970 -14.71755 -14.65394 -14.07695 -13.60230 -13.46176 -13.32918 -13.12456 -12.88384 -12.73856 -12.18222 -11.90756 -11.82976 -11.45794 -11.23859 -11.12353 -10.59428 -9.90392 -9.12914 -8.75153 -8.42609 -6.36040 -0.33754 0.82633 0.95027 1.10011 1.35022 1.37815 1.49369 1.50567 2.03905 2.14871 2.68643 3.49665 3.58892 4.20808 4.29216 4.46095 4.68070 4.74502 4.82310 4.94061 4.98976 5.08243 5.15038 5.26636 5.34695 5.61862 5.78963 5.89271 5.93433 6.05958 6.46853 6.64581 6.72003 6.79847 8.19896 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.011195 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.703901 B = 2500.564873 C = 4016.747083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.063 4.063 3 C -0.255 4.255 4 S 0.052 5.948 5 C -0.121 4.121 6 C -0.168 4.168 7 C -0.156 4.156 8 C 0.392 3.608 9 O -0.511 6.511 10 C -0.153 4.153 11 C 0.111 3.889 12 C -0.460 4.460 13 H 0.106 0.894 14 C 0.028 3.972 15 N -0.815 5.815 16 Si 0.984 3.016 17 H -0.248 1.248 18 H -0.273 1.273 19 H -0.257 1.257 20 C -0.178 4.178 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.182 0.818 25 H 0.139 0.861 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 6.786 1.676 7.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.075 4.075 3 C -0.388 4.388 4 S 0.315 5.685 5 C -0.236 4.236 6 C -0.194 4.194 7 C -0.160 4.160 8 C 0.255 3.745 9 O -0.388 6.388 10 C -0.176 4.176 11 C 0.106 3.894 12 C -0.488 4.488 13 H 0.124 0.876 14 C -0.189 4.189 15 N -0.440 5.440 16 Si 0.804 3.196 17 H -0.171 1.171 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.185 4.185 21 H 0.088 0.912 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.199 0.801 25 H 0.157 0.843 26 H 0.168 0.832 27 H 0.121 0.879 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.108 6.984 1.504 7.448 hybrid contribution -1.818 -1.286 -0.146 2.232 sum 0.290 5.697 1.358 5.864 Atomic orbital electron populations 1.20819 0.89495 1.03026 1.02408 1.18806 0.98011 0.91010 0.99637 1.24972 0.95125 1.01806 1.16867 1.83206 1.06845 0.97408 1.81062 1.22591 0.96717 0.97546 1.06728 1.20034 0.98243 0.89107 1.11971 1.20728 0.95231 0.95257 1.04797 1.24667 0.95944 0.86020 0.67908 1.90459 1.85044 1.25775 1.37489 1.21300 0.91884 0.98685 1.05688 1.18717 0.94134 0.88477 0.88093 1.20076 0.93114 1.07501 1.28124 0.87649 1.26974 1.05048 0.94458 0.92401 1.69862 1.39657 1.14398 1.20037 0.85187 0.75843 0.78774 0.79775 1.17139 1.19724 1.18144 1.19622 0.92051 0.94161 1.12639 0.91174 0.90458 0.90948 0.80110 0.84285 0.83204 0.87928 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.47 8.53 71.24 0.61 -2.87 15 2 C -0.06 -2.58 5.81 -20.67 -0.12 -2.70 15 3 C -0.25 -8.91 10.82 66.64 0.72 -8.19 15 4 S 0.05 1.81 23.30 -56.49 -1.32 0.50 15 5 C -0.12 -5.26 6.47 22.91 0.15 -5.11 15 6 C -0.17 -6.88 9.73 22.85 0.22 -6.66 15 7 C -0.16 -7.01 5.84 -20.33 -0.12 -7.13 15 8 C 0.39 14.88 11.42 70.11 0.80 15.68 15 9 O -0.51 -23.52 17.11 -3.05 -0.05 -23.57 15 10 C -0.15 -8.07 8.13 22.96 0.19 -7.88 15 11 C 0.11 5.77 5.68 -19.70 -0.11 5.65 15 12 C -0.46 -22.92 7.20 23.30 0.17 -22.75 15 13 H 0.11 4.82 5.47 -2.91 -0.02 4.81 15 14 C 0.03 1.34 5.24 85.26 0.45 1.79 15 15 N -0.82 -42.28 11.10 21.84 0.24 -42.04 15 16 Si 0.98 36.13 29.57 68.60 2.03 38.16 15 17 H -0.25 -8.48 7.11 99.48 0.71 -7.78 15 18 H -0.27 -9.78 7.11 99.48 0.71 -9.08 15 19 H -0.26 -9.23 7.11 99.48 0.71 -8.52 15 20 C -0.18 -8.44 6.02 -19.90 -0.12 -8.56 15 21 H 0.07 2.31 7.97 -2.39 -0.02 2.29 15 22 H 0.08 2.19 8.08 -2.39 -0.02 2.17 15 23 H 0.07 2.85 5.70 -2.39 -0.01 2.84 15 24 H 0.18 4.98 8.06 -2.91 -0.02 4.96 15 25 H 0.14 4.50 8.06 -2.91 -0.02 4.47 15 26 H 0.15 3.79 8.06 -2.91 -0.02 3.76 15 27 H 0.10 5.91 6.05 -2.91 -0.02 5.90 15 28 H 0.29 13.89 8.30 -92.71 -0.77 13.12 15 Total: -1.00 -61.64 258.98 4.93 -56.71 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.20 Total: 18.96 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 2.83 Total: -48.72 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.24 Total: -42.04 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.50 kcal Total: -61.64 4.93 -56.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.052 kcal (2) G-P(sol) polarization free energy of solvation -61.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds