Wall clock time and date at job start Mon Mar 30 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35740 * 119.00002 * 2 1 4 4 C 1.41043 * 120.26283 * 180.28069 * 3 2 1 5 5 C 1.40482 * 120.45846 * 179.77825 * 4 3 2 6 6 H 1.08003 * 119.99191 * 154.73252 * 5 4 3 7 7 C 1.40426 * 120.00157 * 334.46112 * 5 4 3 8 8 N 1.30557 * 119.99935 * 342.76424 * 7 5 4 9 9 Si 1.86797 * 119.99673 * 162.76525 * 7 5 4 10 10 H 1.48499 * 109.47493 * 60.00348 * 9 7 5 11 11 H 1.48504 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47524 * 299.99955 * 9 7 5 13 13 C 1.46183 * 119.07444 * 359.50942 * 4 3 2 14 14 C 1.41603 * 120.46386 * 180.23018 * 13 4 3 15 15 O 1.21444 * 120.00458 * 180.02562 * 14 13 4 16 16 C 1.42595 * 119.07691 * 0.24866 * 13 4 3 17 17 C 1.40474 * 128.67833 * 180.02562 * 16 13 4 18 18 C 1.32219 * 115.83883 * 179.97438 * 17 16 13 19 19 S 1.75442 * 110.86993 * 0.02562 * 18 17 16 20 20 C 1.40188 * 118.75731 * 359.97438 * 16 13 4 21 21 H 1.08995 * 109.47164 * 270.20225 * 1 2 3 22 22 H 1.08998 * 109.46676 * 30.20028 * 1 2 3 23 23 H 1.08998 * 109.46830 * 150.19757 * 1 2 3 24 24 H 1.07997 * 119.86684 * 0.06259 * 3 2 1 25 25 H 0.97000 * 119.99447 * 180.02562 * 8 7 5 26 26 H 1.08008 * 119.99645 * 359.97438 * 14 13 4 27 27 H 1.08004 * 122.07775 * 359.97438 * 17 16 13 28 28 H 1.08007 * 124.56714 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1651 1.1872 0.0000 4 6 3.5752 1.2183 -0.0060 5 6 4.2604 2.4447 -0.0107 6 1 5.2639 2.5039 0.3843 7 6 3.6429 3.5921 -0.5341 8 7 2.5981 3.4755 -1.3083 9 14 4.3162 5.2852 -0.1226 10 1 5.7208 5.3873 -0.5937 11 1 3.4927 6.3222 -0.7947 12 1 4.2708 5.4922 1.3472 13 6 4.3136 -0.0433 -0.0012 14 6 5.7296 -0.0464 -0.0021 15 8 6.3346 -1.0994 0.0015 16 6 3.5880 -1.2709 0.0040 17 6 4.0854 -2.5846 0.0095 18 6 3.1766 -3.5449 0.0141 19 16 1.5563 -2.8720 0.0110 20 6 2.1869 -1.2262 0.0048 21 1 -0.3633 0.0036 1.0276 22 1 -0.3632 0.8882 -0.5169 23 1 -0.3633 -0.8918 -0.5108 24 1 1.6068 2.1116 0.0010 25 1 2.1718 4.2681 -1.6702 26 1 6.2716 0.8878 -0.0067 27 1 5.1444 -2.7970 0.0101 28 1 3.4013 -4.6013 0.0190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396345397.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:11 Heat of formation + Delta-G solvation = -11.329260 kcal Electronic energy + Delta-G solvation = -15022.450894 eV Core-core repulsion = 12515.073683 eV Total energy + Delta-G solvation = -2507.377211 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81560 -36.81737 -35.32607 -33.78773 -31.51765 -28.59315 -26.80770 -25.93443 -23.13571 -21.65402 -19.91635 -19.36773 -17.26862 -16.48995 -15.83014 -15.12974 -14.35216 -13.81903 -13.66665 -13.41332 -12.85646 -12.81810 -12.69836 -12.45046 -11.80180 -11.79912 -11.70432 -11.31760 -10.99734 -10.91106 -10.44055 -10.32257 -10.00529 -9.78410 -9.43962 -8.33560 -8.18112 -7.52770 -7.40196 -6.79235 -4.86786 1.43996 2.20460 2.55302 2.80052 2.82132 2.86280 2.95727 3.41431 3.54156 3.78258 4.27111 5.29266 5.61573 5.70832 5.84136 5.92494 6.16795 6.28502 6.38997 6.51225 6.53184 6.63273 6.71765 6.92741 7.08950 7.21376 7.36978 7.54218 7.64054 7.77814 8.05579 8.23187 8.43326 8.99784 9.54617 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.008582 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.467270 B = 3261.730910 C = 4217.103649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.023 4.023 3 C -0.132 4.132 4 C 0.156 3.844 5 C -0.416 4.416 6 H 0.096 0.904 7 C 0.073 3.927 8 N -0.752 5.752 9 Si 0.921 3.079 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.256 1.256 13 C -0.325 4.325 14 C 0.383 3.617 15 O -0.542 6.542 16 C 0.029 3.971 17 C -0.116 4.116 18 C -0.210 4.210 19 S 0.011 5.989 20 C -0.230 4.230 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.130 0.870 25 H 0.295 0.705 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 0.089 1.377 3.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.027 4.027 3 C -0.152 4.152 4 C 0.151 3.849 5 C -0.442 4.442 6 H 0.114 0.886 7 C -0.152 4.152 8 N -0.374 5.374 9 Si 0.744 3.256 10 H -0.181 1.181 11 H -0.197 1.197 12 H -0.180 1.180 13 C -0.331 4.331 14 C 0.255 3.745 15 O -0.429 6.429 16 C 0.021 3.979 17 C -0.147 4.147 18 C -0.344 4.344 19 S 0.272 5.728 20 C -0.344 4.344 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.148 0.852 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.167 0.833 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.448 -0.977 1.217 4.714 hybrid contribution 1.420 1.426 -0.002 2.012 sum -3.028 0.449 1.215 3.293 Atomic orbital electron populations 1.20821 0.92984 1.01794 1.01317 1.18708 0.94224 0.91089 0.98685 1.20962 0.94500 0.95860 1.03924 1.18610 0.91544 0.91004 0.83738 1.19908 1.01918 0.91826 1.30558 0.88567 1.26295 0.93901 1.02775 0.92253 1.69673 1.15687 1.33938 1.18109 0.86106 0.80352 0.78649 0.80527 1.18128 1.19714 1.18022 1.20049 0.94587 0.90929 1.27517 1.21866 0.89329 0.91811 0.71446 1.90317 1.72324 1.36398 1.43845 1.18059 0.91115 0.92729 0.95983 1.20450 1.01473 0.91492 1.01323 1.24992 0.95548 1.02236 1.11597 1.83338 1.08699 0.99591 1.81186 1.21943 0.95655 0.94603 1.22224 0.92037 0.91685 0.92639 0.85215 0.89353 0.91336 0.83268 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.80 36.01 0.35 -1.65 15 2 C -0.02 -0.51 5.86 -104.78 -0.61 -1.13 15 3 C -0.13 -3.07 8.18 -39.41 -0.32 -3.39 15 4 C 0.16 3.78 5.71 -104.80 -0.60 3.19 15 5 C -0.42 -9.46 8.46 -37.91 -0.32 -9.78 15 6 H 0.10 2.04 6.60 -52.48 -0.35 1.70 15 7 C 0.07 1.53 5.15 -17.27 -0.09 1.44 15 8 N -0.75 -16.34 10.99 55.57 0.61 -15.73 15 9 Si 0.92 15.60 29.60 -169.99 -5.03 10.56 15 10 H -0.26 -4.35 7.11 56.52 0.40 -3.95 15 11 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 12 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 13 C -0.32 -8.04 5.98 -103.75 -0.62 -8.66 15 14 C 0.38 9.03 10.82 32.01 0.35 9.38 15 15 O -0.54 -13.56 14.92 5.41 0.08 -13.48 15 16 C 0.03 0.71 5.85 -106.64 -0.62 0.08 15 17 C -0.12 -2.59 9.33 -40.67 -0.38 -2.97 15 18 C -0.21 -4.05 11.08 28.81 0.32 -3.73 15 19 S 0.01 0.21 22.47 -107.50 -2.42 -2.21 15 20 C -0.23 -5.26 6.32 -38.11 -0.24 -5.50 15 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.09 8.05 -51.93 -0.42 0.67 15 23 H 0.05 0.94 7.49 -51.93 -0.39 0.55 15 24 H 0.13 2.96 6.21 -52.49 -0.33 2.63 15 25 H 0.29 5.70 8.29 -40.82 -0.34 5.36 15 26 H 0.07 1.47 6.52 -52.48 -0.34 1.13 15 27 H 0.15 3.37 6.05 -52.48 -0.32 3.05 15 28 H 0.15 2.37 8.06 -52.48 -0.42 1.95 15 LS Contribution 257.25 15.07 3.88 3.88 Total: -1.00 -26.25 257.25 -7.79 -34.04 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.12 Total: 5.66 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.79 Total: -22.72 kcal Atomic # 7 Polarization: -16.34 SS G_CDS: 0.61 Total: -15.73 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 15.60 SS G_CDS: -5.03 Total: 10.56 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.42 Total: -2.21 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.25 -7.79 -34.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345397.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.713 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds