Wall clock time and date at job start Mon Mar 30 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35740 * 119.00002 * 2 1 4 4 C 1.41043 * 120.26283 * 180.28069 * 3 2 1 5 5 C 1.40482 * 120.45846 * 179.77825 * 4 3 2 6 6 H 1.08003 * 119.99191 * 154.73252 * 5 4 3 7 7 C 1.40426 * 120.00157 * 334.46112 * 5 4 3 8 8 N 1.30557 * 119.99935 * 342.76424 * 7 5 4 9 9 Si 1.86797 * 119.99673 * 162.76525 * 7 5 4 10 10 H 1.48499 * 109.47493 * 60.00348 * 9 7 5 11 11 H 1.48504 * 109.47065 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47524 * 299.99955 * 9 7 5 13 13 C 1.46183 * 119.07444 * 359.50942 * 4 3 2 14 14 C 1.41603 * 120.46386 * 180.23018 * 13 4 3 15 15 O 1.21444 * 120.00458 * 180.02562 * 14 13 4 16 16 C 1.42595 * 119.07691 * 0.24866 * 13 4 3 17 17 C 1.40474 * 128.67833 * 180.02562 * 16 13 4 18 18 C 1.32219 * 115.83883 * 179.97438 * 17 16 13 19 19 S 1.75442 * 110.86993 * 0.02562 * 18 17 16 20 20 C 1.40188 * 118.75731 * 359.97438 * 16 13 4 21 21 H 1.08995 * 109.47164 * 270.20225 * 1 2 3 22 22 H 1.08998 * 109.46676 * 30.20028 * 1 2 3 23 23 H 1.08998 * 109.46830 * 150.19757 * 1 2 3 24 24 H 1.07997 * 119.86684 * 0.06259 * 3 2 1 25 25 H 0.97000 * 119.99447 * 180.02562 * 8 7 5 26 26 H 1.08008 * 119.99645 * 359.97438 * 14 13 4 27 27 H 1.08004 * 122.07775 * 359.97438 * 17 16 13 28 28 H 1.08007 * 124.56714 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1651 1.1872 0.0000 4 6 3.5752 1.2183 -0.0060 5 6 4.2604 2.4447 -0.0107 6 1 5.2639 2.5039 0.3843 7 6 3.6429 3.5921 -0.5341 8 7 2.5981 3.4755 -1.3083 9 14 4.3162 5.2852 -0.1226 10 1 5.7208 5.3873 -0.5937 11 1 3.4927 6.3222 -0.7947 12 1 4.2708 5.4922 1.3472 13 6 4.3136 -0.0433 -0.0012 14 6 5.7296 -0.0464 -0.0021 15 8 6.3346 -1.0994 0.0015 16 6 3.5880 -1.2709 0.0040 17 6 4.0854 -2.5846 0.0095 18 6 3.1766 -3.5449 0.0141 19 16 1.5563 -2.8720 0.0110 20 6 2.1869 -1.2262 0.0048 21 1 -0.3633 0.0036 1.0276 22 1 -0.3632 0.8882 -0.5169 23 1 -0.3633 -0.8918 -0.5108 24 1 1.6068 2.1116 0.0010 25 1 2.1718 4.2681 -1.6702 26 1 6.2716 0.8878 -0.0067 27 1 5.1444 -2.7970 0.0101 28 1 3.4013 -4.6013 0.0190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345397.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:11 Heat of formation + Delta-G solvation = -24.073281 kcal Electronic energy + Delta-G solvation = -15023.003516 eV Core-core repulsion = 12515.073683 eV Total energy + Delta-G solvation = -2507.929833 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.53813 -38.60425 -37.00370 -35.42911 -33.20808 -30.27966 -28.40933 -27.65416 -24.81147 -23.35460 -21.61492 -21.06270 -18.98027 -18.18405 -17.44596 -16.77584 -16.05092 -15.48207 -15.22866 -15.09882 -14.52262 -14.48824 -14.37747 -13.97997 -13.41159 -13.37076 -13.24803 -12.77549 -12.55201 -12.44967 -12.02555 -11.96125 -11.61838 -11.42219 -11.04942 -10.06374 -9.93903 -9.25065 -9.02712 -8.43446 -6.62593 -0.28524 0.52428 0.96375 1.28879 1.39740 1.45393 1.54525 1.73121 2.03444 2.12828 2.58537 3.52630 4.06593 4.10493 4.21811 4.36738 4.65795 4.78663 4.81330 4.85864 4.93319 4.96106 5.08949 5.24753 5.40289 5.53591 5.63906 5.80300 5.91751 6.06296 6.32659 6.49801 6.69419 7.19644 7.95184 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.008582 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.467270 B = 3261.730910 C = 4217.103649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.028 4.028 3 C -0.153 4.153 4 C 0.132 3.868 5 C -0.429 4.429 6 H 0.103 0.897 7 C 0.040 3.960 8 N -0.772 5.772 9 Si 0.993 3.007 10 H -0.255 1.255 11 H -0.261 1.261 12 H -0.254 1.254 13 C -0.366 4.366 14 C 0.377 3.623 15 O -0.567 6.567 16 C 0.006 3.994 17 C -0.153 4.153 18 C -0.188 4.188 19 S 0.073 5.927 20 C -0.264 4.264 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.129 0.871 25 H 0.307 0.693 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 0.488 1.468 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.032 4.032 3 C -0.173 4.173 4 C 0.127 3.873 5 C -0.454 4.454 6 H 0.121 0.879 7 C -0.183 4.183 8 N -0.394 5.394 9 Si 0.812 3.188 10 H -0.179 1.179 11 H -0.185 1.185 12 H -0.178 1.178 13 C -0.372 4.372 14 C 0.253 3.747 15 O -0.457 6.457 16 C -0.002 4.002 17 C -0.185 4.185 18 C -0.322 4.322 19 S 0.335 5.665 20 C -0.379 4.379 21 H 0.098 0.902 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.155 0.845 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.734 -0.585 1.300 5.908 hybrid contribution 1.694 1.278 -0.066 2.123 sum -4.040 0.693 1.234 4.281 Atomic orbital electron populations 1.20838 0.90006 1.02736 1.02761 1.19151 0.96477 0.90586 0.96945 1.21026 0.94283 0.96459 1.05574 1.18954 0.92418 0.91530 0.84381 1.20279 1.02472 0.92355 1.30254 0.87907 1.27135 0.93878 1.05860 0.91462 1.69681 1.16086 1.35762 1.17829 0.85043 0.79722 0.73801 0.80254 1.17865 1.18473 1.17782 1.20295 0.95192 0.91748 1.29942 1.22061 0.89370 0.92115 0.71178 1.90286 1.72551 1.37153 1.45679 1.18458 0.92235 0.93486 0.96036 1.20387 1.01623 0.91611 1.04841 1.25510 0.95315 1.03701 1.07683 1.83005 1.07426 0.96330 1.79725 1.22367 0.95749 0.97034 1.22746 0.90180 0.90763 0.91622 0.85302 0.88081 0.89541 0.84461 0.79183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.62 9.80 71.24 0.70 -2.92 15 2 C -0.03 -1.23 5.86 -19.96 -0.12 -1.35 15 3 C -0.15 -7.23 8.18 22.38 0.18 -7.05 15 4 C 0.13 6.59 5.71 -19.98 -0.11 6.48 15 5 C -0.43 -19.72 8.46 23.35 0.20 -19.52 15 6 H 0.10 4.43 6.60 -2.91 -0.02 4.41 15 7 C 0.04 1.66 5.15 85.42 0.44 2.10 15 8 N -0.77 -33.11 10.99 21.91 0.24 -32.87 15 9 Si 0.99 30.71 29.60 68.60 2.03 32.74 15 10 H -0.25 -7.76 7.11 99.48 0.71 -7.06 15 11 H -0.26 -7.54 7.11 99.48 0.71 -6.83 15 12 H -0.25 -7.75 7.11 99.48 0.71 -7.04 15 13 C -0.37 -18.84 5.98 -19.30 -0.12 -18.95 15 14 C 0.38 18.60 10.82 68.65 0.74 19.34 15 15 O -0.57 -29.62 14.92 -3.54 -0.05 -29.68 15 16 C 0.01 0.31 5.85 -21.17 -0.12 0.18 15 17 C -0.15 -6.89 9.33 21.78 0.20 -6.69 15 18 C -0.19 -6.89 11.08 66.79 0.74 -6.15 15 19 S 0.07 2.66 22.47 -56.49 -1.27 1.39 15 20 C -0.26 -12.03 6.32 23.22 0.15 -11.88 15 21 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 2.36 8.05 -2.39 -0.02 2.34 15 23 H 0.06 2.07 7.49 -2.39 -0.02 2.05 15 24 H 0.13 5.94 6.21 -2.91 -0.02 5.92 15 25 H 0.31 11.51 8.29 -92.71 -0.77 10.74 15 26 H 0.09 3.85 6.52 -2.91 -0.02 3.83 15 27 H 0.14 6.42 6.05 -2.91 -0.02 6.40 15 28 H 0.19 5.30 8.06 -2.91 -0.02 5.28 15 Total: -1.00 -57.41 257.25 5.03 -52.39 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 1.20 Total: 22.44 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 2.88 Total: -46.41 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.24 Total: -32.87 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 30.71 SS G_CDS: 2.03 Total: 32.74 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.27 Total: 1.39 kcal Total: -57.41 5.03 -52.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345397.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.314 kcal (2) G-P(sol) polarization free energy of solvation -57.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds