Wall clock time and date at job start Mon Mar 30 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32758 * 124.67555 * 2 1 4 4 C 1.39963 * 115.81555 * 179.97438 * 3 2 1 5 5 C 1.39656 * 112.67891 * 0.02562 * 4 3 2 6 6 S 1.75519 * 124.68187 * 179.97438 * 2 1 3 7 7 C 1.41266 * 119.86754 * 179.97438 * 5 4 3 8 8 C 1.46520 * 119.50888 * 179.97438 * 7 5 4 9 9 O 1.21360 * 120.00043 * 180.02562 * 8 7 5 10 10 C 1.40071 * 120.98111 * 359.71797 * 7 5 4 11 11 C 1.35886 * 121.04405 * 0.54608 * 10 7 5 12 12 C 1.40732 * 120.54363 * 359.47309 * 11 10 7 13 13 C 1.40127 * 120.23582 * 180.27237 * 12 11 10 14 14 H 1.08000 * 119.99796 * 149.97556 * 13 12 11 15 15 C 1.40446 * 120.00120 * 329.97716 * 13 12 11 16 16 N 1.30550 * 119.99707 * 161.81017 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 341.81044 * 15 13 12 18 18 H 1.48498 * 109.47229 * 95.39774 * 17 15 13 19 19 H 1.48497 * 109.47089 * 215.40469 * 17 15 13 20 20 H 1.48499 * 109.46873 * 335.40239 * 17 15 13 21 21 H 1.09000 * 109.46970 * 90.00179 * 1 2 3 22 22 H 1.08997 * 109.46667 * 210.00069 * 1 2 3 23 23 H 1.09001 * 109.46878 * 329.99842 * 1 2 3 24 24 H 1.08007 * 122.08935 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.99844 * 0.02562 * 8 7 5 26 26 H 1.07999 * 119.47803 * 180.27852 * 10 7 5 27 27 H 1.07993 * 119.72368 * 179.75170 * 11 10 7 28 28 H 0.97001 * 119.99727 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2623 1.0918 0.0000 4 6 3.6453 0.8762 0.0006 5 6 3.9788 -0.4799 0.0005 6 16 2.5058 -1.4433 0.0006 7 6 5.3364 -0.8705 0.0004 8 6 5.6775 -2.2954 0.0009 9 8 6.8409 -2.6409 0.0013 10 6 6.3613 0.0843 -0.0054 11 6 6.0806 1.4138 -0.0001 12 6 4.7469 1.8631 0.0003 13 6 4.4648 3.2357 0.0000 14 1 3.5626 3.6014 -0.4678 15 6 5.3551 4.1358 0.6080 16 7 5.2988 5.4070 0.3161 17 14 6.6198 3.5141 1.8341 18 1 7.9088 3.2740 1.1370 19 1 6.8152 4.5284 2.9009 20 1 6.1406 2.2454 2.4391 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8362 2.0843 0.0004 25 1 4.8936 -3.0383 0.0008 26 1 7.3910 -0.2414 -0.0099 27 1 6.8875 2.1315 -0.0007 28 1 5.9140 6.0286 0.7358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396345419.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:24 Heat of formation + Delta-G solvation = -14.207794 kcal Electronic energy + Delta-G solvation = -14808.297402 eV Core-core repulsion = 12300.795368 eV Total energy + Delta-G solvation = -2507.502034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.75793 -37.49916 -35.10545 -34.05682 -31.07866 -30.50998 -27.22478 -25.25996 -23.02583 -22.18500 -20.12005 -19.13492 -18.14253 -16.70418 -15.40848 -15.23434 -14.90446 -14.25454 -14.03493 -13.66251 -13.22525 -13.18435 -12.94964 -12.53090 -12.19123 -12.14785 -11.60470 -11.47253 -11.20451 -10.86703 -10.52378 -10.24035 -10.01939 -9.88985 -9.58010 -8.80100 -8.55501 -7.62794 -7.56094 -7.13174 -5.00060 1.56383 1.76907 2.29328 2.72766 2.78985 2.89488 2.95802 3.10973 3.50507 3.61166 4.15839 5.00505 5.20242 5.39815 5.66938 5.86078 5.88222 5.95944 6.01146 6.23319 6.27557 6.44299 6.58336 6.64013 6.85098 7.00172 7.28587 7.34772 7.47461 7.50673 7.72144 8.10291 8.18336 8.39122 9.32751 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.010424 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.510205 B = 2685.531592 C = 3951.956867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.242 4.242 3 C -0.063 4.063 4 C -0.179 4.179 5 C -0.024 4.024 6 S 0.032 5.968 7 C -0.320 4.320 8 C 0.382 3.618 9 O -0.516 6.516 10 C 0.026 3.974 11 C -0.275 4.275 12 C 0.139 3.861 13 C -0.372 4.372 14 H 0.105 0.895 15 C 0.077 3.923 16 N -0.752 5.752 17 Si 0.922 3.078 18 H -0.260 1.260 19 H -0.283 1.283 20 H -0.236 1.236 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 -3.173 1.274 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.357 4.357 3 C -0.091 4.091 4 C -0.186 4.186 5 C -0.141 4.141 6 S 0.295 5.705 7 C -0.328 4.328 8 C 0.250 3.750 9 O -0.398 6.398 10 C 0.005 3.995 11 C -0.295 4.295 12 C 0.133 3.867 13 C -0.396 4.396 14 H 0.123 0.877 15 C -0.151 4.151 16 N -0.371 5.371 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.209 1.209 20 H -0.158 1.158 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.147 0.853 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.506 -4.536 1.265 6.518 hybrid contribution 0.682 1.624 0.377 1.802 sum -3.824 -2.912 1.642 5.079 Atomic orbital electron populations 1.20108 0.88888 1.01921 1.01496 1.23479 0.98687 0.94907 1.18619 1.19608 0.92087 0.98346 0.99107 1.18923 0.92579 0.91507 1.15621 1.22561 0.95401 0.95674 1.00433 1.83475 0.96734 1.10180 1.80123 1.19001 0.90253 0.94901 1.28620 1.23288 0.90467 0.90419 0.70850 1.90414 1.23834 1.84329 1.41188 1.20340 0.97287 0.92260 0.89595 1.20392 0.95490 0.95204 1.18450 1.18580 0.89942 0.91735 0.86491 1.19899 1.05788 0.89744 1.24214 0.87687 1.26646 0.97138 0.94368 0.96911 1.69528 1.31235 1.04331 1.32037 0.86084 0.79724 0.80526 0.79102 1.18502 1.20942 1.15814 0.92060 0.92376 0.91471 0.85275 0.91509 0.87120 0.87362 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.34 36.01 0.37 -0.51 15 2 C -0.24 -4.31 6.44 -36.18 -0.23 -4.54 15 3 C -0.06 -1.25 9.61 -40.81 -0.39 -1.64 15 4 C -0.18 -4.04 6.02 -104.76 -0.63 -4.67 15 5 C -0.02 -0.53 6.36 -37.90 -0.24 -0.77 15 6 S 0.03 0.59 22.67 -107.50 -2.44 -1.85 15 7 C -0.32 -7.06 5.90 -104.72 -0.62 -7.68 15 8 C 0.38 7.84 11.26 34.07 0.38 8.23 15 9 O -0.52 -11.74 17.07 5.49 0.09 -11.64 15 10 C 0.03 0.58 9.44 -39.74 -0.38 0.21 15 11 C -0.27 -6.28 7.05 -39.48 -0.28 -6.56 15 12 C 0.14 3.26 5.29 -104.29 -0.55 2.71 15 13 C -0.37 -8.74 9.30 -38.04 -0.35 -9.09 15 14 H 0.11 2.52 7.83 -52.49 -0.41 2.10 15 15 C 0.08 1.73 5.40 -17.27 -0.09 1.64 15 16 N -0.75 -16.89 13.91 55.57 0.77 -16.12 15 17 Si 0.92 18.45 24.52 -169.99 -4.17 14.28 15 18 H -0.26 -5.06 6.72 56.52 0.38 -4.68 15 19 H -0.28 -5.37 7.11 56.52 0.40 -4.96 15 20 H -0.24 -5.01 6.87 56.52 0.39 -4.62 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.13 2.43 7.84 -52.48 -0.41 2.02 15 25 H 0.07 1.20 7.65 -52.49 -0.40 0.79 15 26 H 0.11 2.35 7.55 -52.49 -0.40 1.95 15 27 H 0.11 2.37 4.72 -52.49 -0.25 2.13 15 28 H 0.30 5.98 8.29 -40.82 -0.34 5.64 15 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -25.57 259.60 -7.14 -32.72 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.31 Total: 1.40 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.01 Total: -22.69 kcal Atomic # 7 Polarization: -16.89 SS G_CDS: 0.77 Total: -16.12 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.17 Total: 14.28 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.44 Total: -1.85 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -25.57 -7.14 -32.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345419.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.507 kcal (2) G-P(sol) polarization free energy of solvation -25.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds