Wall clock time and date at job start Mon Mar 30 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32758 * 124.67555 * 2 1 4 4 C 1.39963 * 115.81555 * 179.97438 * 3 2 1 5 5 C 1.39656 * 112.67891 * 0.02562 * 4 3 2 6 6 S 1.75519 * 124.68187 * 179.97438 * 2 1 3 7 7 C 1.41266 * 119.86754 * 179.97438 * 5 4 3 8 8 C 1.46520 * 119.50888 * 179.97438 * 7 5 4 9 9 O 1.21360 * 120.00043 * 180.02562 * 8 7 5 10 10 C 1.40071 * 120.98111 * 359.71797 * 7 5 4 11 11 C 1.35886 * 121.04405 * 0.54608 * 10 7 5 12 12 C 1.40732 * 120.54363 * 359.47309 * 11 10 7 13 13 C 1.40127 * 120.23582 * 180.27237 * 12 11 10 14 14 H 1.08000 * 119.99796 * 149.97556 * 13 12 11 15 15 C 1.40446 * 120.00120 * 329.97716 * 13 12 11 16 16 N 1.30550 * 119.99707 * 161.81017 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 341.81044 * 15 13 12 18 18 H 1.48498 * 109.47229 * 95.39774 * 17 15 13 19 19 H 1.48497 * 109.47089 * 215.40469 * 17 15 13 20 20 H 1.48499 * 109.46873 * 335.40239 * 17 15 13 21 21 H 1.09000 * 109.46970 * 90.00179 * 1 2 3 22 22 H 1.08997 * 109.46667 * 210.00069 * 1 2 3 23 23 H 1.09001 * 109.46878 * 329.99842 * 1 2 3 24 24 H 1.08007 * 122.08935 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.99844 * 0.02562 * 8 7 5 26 26 H 1.07999 * 119.47803 * 180.27852 * 10 7 5 27 27 H 1.07993 * 119.72368 * 179.75170 * 11 10 7 28 28 H 0.97001 * 119.99727 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2623 1.0918 0.0000 4 6 3.6453 0.8762 0.0006 5 6 3.9788 -0.4799 0.0005 6 16 2.5058 -1.4433 0.0006 7 6 5.3364 -0.8705 0.0004 8 6 5.6775 -2.2954 0.0009 9 8 6.8409 -2.6409 0.0013 10 6 6.3613 0.0843 -0.0054 11 6 6.0806 1.4138 -0.0001 12 6 4.7469 1.8631 0.0003 13 6 4.4648 3.2357 0.0000 14 1 3.5626 3.6014 -0.4678 15 6 5.3551 4.1358 0.6080 16 7 5.2988 5.4070 0.3161 17 14 6.6198 3.5141 1.8341 18 1 7.9088 3.2740 1.1370 19 1 6.8152 4.5284 2.9009 20 1 6.1406 2.2454 2.4391 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.8362 2.0843 0.0004 25 1 4.8936 -3.0383 0.0008 26 1 7.3910 -0.2414 -0.0099 27 1 6.8875 2.1315 -0.0007 28 1 5.9140 6.0286 0.7358 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345419.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:24 Heat of formation + Delta-G solvation = -27.195787 kcal Electronic energy + Delta-G solvation = -14808.860603 eV Core-core repulsion = 12300.795368 eV Total energy + Delta-G solvation = -2508.065235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.42834 -39.17588 -36.70074 -35.72376 -32.78484 -31.95469 -28.83911 -26.78862 -24.66858 -23.84722 -21.70334 -20.73058 -19.83757 -18.34233 -17.07287 -16.84468 -16.52389 -15.83597 -15.65908 -15.24856 -14.83728 -14.62248 -14.57881 -14.14468 -13.71950 -13.48182 -13.15089 -12.99827 -12.84257 -12.37519 -12.16722 -11.81623 -11.65632 -11.49563 -11.21108 -10.47072 -10.20657 -9.31955 -9.16379 -8.70057 -6.74030 -0.13557 0.16566 0.76195 1.15890 1.18771 1.28004 1.31381 1.46303 1.87953 2.00035 2.44805 3.27177 3.63026 3.97012 4.18738 4.35210 4.43994 4.62168 4.63153 4.85046 4.87451 4.90311 4.93063 5.21022 5.29833 5.33108 5.62798 5.70739 5.71735 5.83270 5.99306 6.35408 6.46859 6.74856 7.69542 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.010424 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.510205 B = 2685.531592 C = 3951.956867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.218 4.218 3 C -0.098 4.098 4 C -0.195 4.195 5 C -0.056 4.056 6 S 0.090 5.910 7 C -0.331 4.331 8 C 0.391 3.609 9 O -0.539 6.539 10 C 0.013 3.987 11 C -0.290 4.290 12 C 0.125 3.875 13 C -0.398 4.398 14 H 0.087 0.913 15 C 0.058 3.942 16 N -0.777 5.777 17 Si 0.962 3.038 18 H -0.253 1.253 19 H -0.263 1.263 20 H -0.258 1.258 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.132 0.868 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -4.704 1.656 7.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.334 4.334 3 C -0.126 4.126 4 C -0.203 4.203 5 C -0.173 4.173 6 S 0.353 5.647 7 C -0.339 4.339 8 C 0.259 3.741 9 O -0.421 6.421 10 C -0.007 4.007 11 C -0.310 4.310 12 C 0.120 3.880 13 C -0.423 4.423 14 H 0.105 0.895 15 C -0.168 4.168 16 N -0.397 5.397 17 Si 0.784 3.216 18 H -0.178 1.178 19 H -0.188 1.188 20 H -0.182 1.182 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.149 0.851 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.856 -6.057 1.642 8.584 hybrid contribution 0.920 1.941 0.220 2.159 sum -4.937 -4.116 1.862 6.692 Atomic orbital electron populations 1.20316 0.85482 1.03684 1.03250 1.24175 1.00929 0.94248 1.14015 1.19683 0.91414 0.99483 1.02051 1.19289 0.93622 0.91986 1.15399 1.22836 0.96845 0.96426 1.01153 1.83203 0.93919 1.08716 1.78822 1.19325 0.90625 0.95858 1.28085 1.23627 0.90743 0.90248 0.69469 1.90410 1.25120 1.84478 1.42130 1.20530 0.97983 0.92413 0.89785 1.20469 0.95499 0.95609 1.19446 1.18803 0.90720 0.92065 0.86459 1.19842 1.05987 0.90309 1.26144 0.89466 1.27051 0.97906 0.94358 0.97490 1.69504 1.32332 1.04852 1.33020 0.85496 0.78492 0.79467 0.78153 1.17759 1.18823 1.18233 0.90161 0.90266 0.90103 0.85051 0.87654 0.86555 0.87134 0.87545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.34 71.24 0.74 -0.84 15 2 C -0.22 -7.15 6.44 24.51 0.16 -6.99 15 3 C -0.10 -3.83 9.61 21.51 0.21 -3.63 15 4 C -0.20 -8.84 6.02 -19.96 -0.12 -8.96 15 5 C -0.06 -2.37 6.36 23.36 0.15 -2.22 15 6 S 0.09 2.97 22.67 -56.49 -1.28 1.69 15 7 C -0.33 -14.39 5.90 -19.93 -0.12 -14.50 15 8 C 0.39 15.28 11.26 69.98 0.79 16.06 15 9 O -0.54 -23.76 17.07 -3.28 -0.06 -23.81 15 10 C 0.01 0.61 9.44 22.17 0.21 0.82 15 11 C -0.29 -13.52 7.05 22.33 0.16 -13.36 15 12 C 0.13 6.05 5.29 -19.65 -0.10 5.94 15 13 C -0.40 -19.43 9.30 23.27 0.22 -19.21 15 14 H 0.09 4.42 7.83 -2.91 -0.02 4.39 15 15 C 0.06 2.64 5.40 85.42 0.46 3.10 15 16 N -0.78 -35.42 13.91 21.91 0.30 -35.12 15 17 Si 0.96 38.17 24.52 68.60 1.68 39.85 15 18 H -0.25 -9.63 6.72 99.48 0.67 -8.97 15 19 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 20 H -0.26 -11.14 6.87 99.48 0.68 -10.46 15 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.13 4.98 7.84 -2.91 -0.02 4.96 15 25 H 0.11 3.36 7.65 -2.91 -0.02 3.34 15 26 H 0.12 4.99 7.55 -2.91 -0.02 4.96 15 27 H 0.11 4.96 4.72 -2.91 -0.01 4.94 15 28 H 0.31 12.47 8.29 -92.71 -0.77 11.70 15 Total: -1.00 -54.78 259.60 4.52 -50.26 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.13 Total: 10.93 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 2.74 Total: -43.80 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.30 Total: -35.12 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.68 Total: 39.85 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.28 Total: 1.69 kcal Total: -54.78 4.52 -50.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345419.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.060 kcal (2) G-P(sol) polarization free energy of solvation -54.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds