Wall clock time and date at job start Mon Mar 30 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.31990 * 124.33835 * 2 1 4 4 C 1.45354 * 114.98590 * 179.97438 * 3 2 1 5 5 C 1.41618 * 128.61773 * 180.02562 * 4 3 2 6 6 C 1.36912 * 121.91718 * 179.97438 * 5 4 3 7 7 C 1.40066 * 120.57661 * 0.27104 * 6 5 4 8 8 C 1.46226 * 120.57024 * 179.70219 * 7 6 5 9 9 O 1.21400 * 120.00254 * 174.68873 * 8 7 6 10 10 C 1.46455 * 118.85879 * 359.49289 * 7 6 5 11 11 C 1.40162 * 120.46443 * 180.28203 * 10 7 6 12 12 H 1.08004 * 119.99845 * 316.01711 * 11 10 7 13 13 C 1.40477 * 120.00192 * 136.00475 * 11 10 7 14 14 N 1.30532 * 120.00023 * 341.97275 * 13 11 10 15 15 Si 1.86805 * 119.99964 * 161.97131 * 13 11 10 16 16 H 1.48494 * 109.46987 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46848 * 120.00334 * 15 13 11 18 18 H 1.48491 * 109.47155 * 240.00103 * 15 13 11 19 19 C 1.39621 * 111.71174 * 0.02562 * 4 3 2 20 20 S 1.75288 * 124.33480 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47147 * 90.00234 * 1 2 3 22 22 H 1.08997 * 109.47113 * 210.00649 * 1 2 3 23 23 H 1.08998 * 109.47089 * 330.00345 * 1 2 3 24 24 H 1.07999 * 122.51021 * 359.97438 * 3 2 1 25 25 H 1.08000 * 119.03514 * 359.97438 * 5 4 3 26 26 H 1.08001 * 119.70922 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.00207 * 354.68191 * 8 7 6 28 28 H 0.97005 * 120.00048 * 175.19140 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.0899 0.0000 4 6 3.6858 0.8537 0.0006 5 6 4.7378 1.8018 0.0012 6 6 6.0535 1.4232 0.0023 7 6 6.4048 0.0673 -0.0030 8 6 7.8100 -0.3368 -0.0084 9 8 8.1044 -1.5110 0.0844 10 6 5.3404 -0.9386 0.0018 11 6 5.6537 -2.3048 0.0027 12 1 6.4284 -2.6815 -0.6488 13 6 4.9604 -3.1839 0.8511 14 7 4.2921 -2.7163 1.8702 15 14 4.9949 -5.0222 0.5209 16 1 5.8173 -5.2931 -0.6855 17 1 5.5846 -5.7240 1.6893 18 1 3.6107 -5.5109 0.2968 19 6 3.9847 -0.5102 0.0005 20 16 2.4957 -1.4475 0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 1.8270 2.0829 -0.0004 25 1 4.4949 2.8542 0.0009 26 1 6.8273 2.1767 0.0031 27 1 8.5862 0.4091 -0.0951 28 1 3.7568 -3.3144 2.4149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396345825.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:54 Heat of formation + Delta-G solvation = -23.923072 kcal Electronic energy + Delta-G solvation = -15070.536073 eV Core-core repulsion = 12562.612753 eV Total energy + Delta-G solvation = -2507.923320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.01196 -38.74872 -36.50989 -35.31369 -31.92625 -31.75908 -28.24202 -27.22628 -24.34806 -23.52457 -21.44641 -20.73096 -19.42294 -17.70805 -17.17771 -16.55228 -16.36557 -15.56685 -15.23827 -14.93154 -14.63062 -14.57132 -14.12490 -13.75558 -13.51630 -13.29522 -13.19701 -12.92072 -12.73154 -12.34160 -12.14413 -11.68458 -11.47852 -11.21168 -10.80290 -10.22435 -9.84302 -8.98395 -8.93707 -8.11765 -6.52030 -0.14154 0.88414 1.04504 1.17827 1.29053 1.42583 1.46833 1.64721 2.13046 2.17096 2.65968 3.46975 3.86842 3.95916 4.39887 4.48138 4.60848 4.71394 4.77997 4.83071 4.99637 5.05634 5.15426 5.22160 5.42011 5.49683 5.72293 5.77144 5.98806 6.22407 6.43748 6.62249 6.77162 7.20204 8.11699 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.013204 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.686594 B = 2120.038122 C = 3507.290744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.179 4.179 3 C -0.153 4.153 4 C -0.047 4.047 5 C -0.221 4.221 6 C -0.028 4.028 7 C -0.342 4.342 8 C 0.373 3.627 9 O -0.528 6.528 10 C 0.158 3.842 11 C -0.449 4.449 12 H 0.078 0.922 13 C 0.041 3.959 14 N -0.784 5.784 15 Si 0.958 3.042 16 H -0.263 1.263 17 H -0.263 1.263 18 H -0.248 1.248 19 C -0.205 4.205 20 S 0.071 5.929 21 H 0.087 0.913 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.159 0.841 25 H 0.131 0.869 26 H 0.149 0.851 27 H 0.124 0.876 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 5.236 -2.146 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.296 4.296 3 C -0.184 4.184 4 C -0.057 4.057 5 C -0.242 4.242 6 C -0.048 4.048 7 C -0.347 4.347 8 C 0.241 3.759 9 O -0.409 6.409 10 C 0.151 3.849 11 C -0.477 4.477 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.409 5.409 15 Si 0.778 3.222 16 H -0.187 1.187 17 H -0.188 1.188 18 H -0.172 1.172 19 C -0.320 4.320 20 S 0.337 5.663 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.111 0.889 24 H 0.176 0.824 25 H 0.149 0.851 26 H 0.167 0.833 27 H 0.139 0.861 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.508 3.013 -1.847 7.406 hybrid contribution 0.581 0.678 0.118 0.901 sum -5.927 3.690 -1.729 7.193 Atomic orbital electron populations 1.20434 0.85386 1.03878 1.03676 1.24683 1.01589 0.96725 1.06569 1.21036 0.90656 0.99852 1.06842 1.19757 0.94240 0.92360 0.99295 1.20464 0.91309 0.97819 1.14579 1.20993 0.96291 0.94030 0.93455 1.21839 0.95253 0.93866 1.23777 1.23763 0.90699 0.90454 0.71028 1.90454 1.86077 1.24209 1.40158 1.18401 0.88515 0.93304 0.84635 1.19729 1.16853 0.92579 1.18503 0.90393 1.26638 0.92722 1.05606 0.92926 1.69686 1.20125 1.40727 1.10360 0.85494 0.80050 0.76922 0.79753 1.18710 1.18795 1.17208 1.23025 0.97122 0.95764 1.16136 1.83655 0.95676 1.09158 1.77823 0.89415 0.91212 0.88854 0.82350 0.85103 0.83337 0.86053 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.32 71.24 0.74 -1.15 15 2 C -0.18 -6.52 6.39 24.79 0.16 -6.36 15 3 C -0.15 -5.73 10.20 23.20 0.24 -5.50 15 4 C -0.05 -2.13 6.03 -20.28 -0.12 -2.25 15 5 C -0.22 -8.88 10.01 22.79 0.23 -8.65 15 6 C -0.03 -1.11 9.74 22.40 0.22 -0.90 15 7 C -0.34 -16.44 6.06 -18.62 -0.11 -16.55 15 8 C 0.37 16.52 11.41 69.90 0.80 17.32 15 9 O -0.53 -27.97 14.81 -3.40 -0.05 -28.02 15 10 C 0.16 8.63 5.45 -19.69 -0.11 8.52 15 11 C -0.45 -25.33 7.25 23.28 0.17 -25.17 15 12 H 0.08 4.62 6.65 -2.91 -0.02 4.60 15 13 C 0.04 2.11 4.38 85.43 0.37 2.48 15 14 N -0.78 -41.17 11.12 21.92 0.24 -40.93 15 15 Si 0.96 40.34 29.60 68.60 2.03 42.37 15 16 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 18 H -0.25 -9.60 7.11 99.48 0.71 -8.90 15 19 C -0.20 -10.44 5.75 23.58 0.14 -10.31 15 20 S 0.07 3.19 20.36 -56.49 -1.15 2.04 15 21 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 23 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.16 4.69 8.06 -2.91 -0.02 4.67 15 25 H 0.13 4.27 8.06 -2.91 -0.02 4.24 15 26 H 0.15 4.41 8.06 -2.91 -0.02 4.39 15 27 H 0.12 3.92 8.06 -2.91 -0.02 3.90 15 28 H 0.30 14.06 8.30 -92.70 -0.77 13.29 15 Total: -1.00 -66.97 261.79 4.96 -62.01 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.18 Total: 11.04 kcal Atomic # 6 Polarization: -51.22 SS G_CDS: 2.71 Total: -48.51 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.24 Total: -40.93 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.15 Total: 2.04 kcal Total: -66.97 4.96 -62.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396345825.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.085 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds