Wall clock time and date at job start Mon Mar 30 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39014 * 119.76027 * 2 1 4 4 S 1.76241 * 129.73337 * 359.91812 * 3 2 1 5 5 C 1.75416 * 91.60893 * 180.31248 * 4 3 2 6 6 C 1.32429 * 110.92163 * 0.02562 * 5 4 3 7 7 C 1.40583 * 120.97715 * 180.26586 * 3 2 1 8 8 C 1.41331 * 119.76278 * 359.73471 * 7 3 2 9 9 C 1.38433 * 120.71633 * 0.02562 * 8 7 3 10 10 C 1.46328 * 120.39021 * 179.97438 * 9 8 7 11 11 O 1.21378 * 120.00066 * 174.70025 * 10 9 8 12 12 C 1.40236 * 119.76083 * 179.76380 * 2 1 3 13 13 C 1.40332 * 120.58094 * 0.02562 * 12 2 1 14 14 H 1.08000 * 120.00087 * 301.39840 * 13 12 2 15 15 C 1.40246 * 120.00511 * 121.11554 * 13 12 2 16 16 N 1.30676 * 120.00206 * 171.69147 * 15 13 12 17 17 Si 1.86801 * 119.99549 * 351.69921 * 15 13 12 18 18 H 1.48490 * 109.47385 * 93.48406 * 17 15 13 19 19 H 1.48500 * 109.46793 * 213.48986 * 17 15 13 20 20 H 1.48502 * 109.47112 * 333.48210 * 17 15 13 21 21 H 1.09004 * 109.47134 * 270.23578 * 1 2 3 22 22 H 1.09001 * 109.47295 * 30.23596 * 1 2 3 23 23 H 1.09002 * 109.47115 * 150.23385 * 1 2 3 24 24 H 1.07997 * 124.54521 * 179.97438 * 5 4 3 25 25 H 1.07999 * 122.05383 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.64309 * 180.02562 * 8 7 3 27 27 H 1.07994 * 120.00076 * 354.69548 * 10 9 8 28 28 H 0.97001 * 119.99559 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.2068 0.0000 4 16 1.5796 2.8575 -0.0019 5 6 3.2047 3.5179 -0.0100 6 6 4.1084 2.5499 -0.0115 7 6 3.6025 1.2367 -0.0056 8 6 4.3299 0.0250 -0.0056 9 6 3.6736 -1.1939 -0.0008 10 6 4.4339 -2.4441 -0.0014 11 8 3.8554 -3.5063 0.1000 12 6 2.2030 -1.2174 0.0050 13 6 1.5086 -2.4369 0.0095 14 1 0.8177 -2.6619 0.8085 15 6 1.7074 -3.3609 -1.0266 16 7 1.1901 -4.5580 -0.9426 17 14 2.7118 -2.8804 -2.5265 18 1 4.1257 -3.2878 -2.3267 19 1 2.1651 -3.5620 -3.7273 20 1 2.6427 -1.4094 -2.7180 21 1 -0.3633 0.0042 1.0277 22 1 -0.3634 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 3.4371 4.5726 -0.0140 25 1 5.1686 2.7557 -0.0158 26 1 5.4096 0.0502 -0.0095 27 1 5.5098 -2.4217 -0.0921 28 1 1.3280 -5.1972 -1.6591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396346356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:14 Heat of formation + Delta-G solvation = 12.796422 kcal Electronic energy + Delta-G solvation = -15343.755384 eV Core-core repulsion = 12837.424341 eV Total energy + Delta-G solvation = -2506.331043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.94542 -37.47133 -34.91783 -33.04293 -31.76180 -29.34646 -26.79043 -25.33738 -23.39125 -21.76736 -19.91858 -19.25681 -17.71994 -16.35247 -15.72855 -15.27838 -14.84015 -14.00390 -13.53674 -13.37552 -13.22898 -13.13537 -12.76206 -12.23288 -12.10216 -11.95460 -11.56783 -11.08968 -10.87818 -10.77035 -10.27289 -10.04479 -9.91913 -9.67387 -9.39188 -8.69699 -8.41250 -7.39714 -6.97582 -6.79969 -4.50527 1.53852 1.62141 2.32245 2.72596 2.86837 3.10256 3.17162 3.25852 3.51378 3.97787 4.51445 4.99875 5.14011 5.40225 5.59522 5.80797 6.06413 6.16759 6.28687 6.32772 6.50102 6.54613 6.66973 6.70585 7.01733 7.12088 7.19254 7.27622 7.56327 7.73720 8.20928 8.44368 8.52978 8.72738 10.12112 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.009595 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.891703 B = 2917.551358 C = 3350.795322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.151 4.151 3 C -0.055 4.055 4 S 0.015 5.985 5 C -0.252 4.252 6 C -0.077 4.077 7 C -0.200 4.200 8 C 0.000 4.000 9 C -0.266 4.266 10 C 0.360 3.640 11 O -0.432 6.432 12 C 0.142 3.858 13 C -0.431 4.431 14 H 0.100 0.900 15 C 0.122 3.878 16 N -0.790 5.790 17 Si 0.890 3.110 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.247 1.247 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.075 0.925 24 H 0.149 0.851 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 8.729 -0.788 9.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C -0.170 4.170 4 S 0.275 5.725 5 C -0.385 4.385 6 C -0.107 4.107 7 C -0.205 4.205 8 C -0.020 4.020 9 C -0.269 4.269 10 C 0.219 3.781 11 O -0.305 6.305 12 C 0.135 3.865 13 C -0.459 4.459 14 H 0.118 0.882 15 C -0.099 4.099 16 N -0.414 5.414 17 Si 0.714 3.286 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.171 1.171 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.167 0.833 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.375 8.641 -0.798 8.997 hybrid contribution 2.080 -0.253 -0.657 2.196 sum 4.456 8.388 -1.455 9.609 Atomic orbital electron populations 1.20479 0.91861 1.01526 1.00760 1.19555 0.95100 0.89875 1.11390 1.22449 0.95791 0.95377 1.03398 1.83817 1.08345 0.98629 1.81686 1.24648 0.95578 1.01965 1.16316 1.19857 0.99414 0.91360 1.00087 1.17770 0.91964 0.93080 1.17731 1.20940 0.97554 0.90483 0.93071 1.21836 0.95605 0.94004 1.15421 1.23319 0.93223 0.88123 0.73410 1.90597 1.73564 1.32636 1.33709 1.18350 0.88947 0.92311 0.86870 1.19015 1.21776 0.96774 1.08336 0.88186 1.25823 0.91867 0.92757 0.99496 1.69513 1.35747 1.03863 1.32295 0.86713 0.80870 0.81077 0.79892 1.19078 1.20873 1.17051 0.93010 0.93923 0.90596 0.83290 0.85697 0.87105 0.91161 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.45 36.00 0.34 -1.47 15 2 C -0.15 -3.43 5.96 -103.59 -0.62 -4.04 15 3 C -0.05 -1.16 6.29 -38.41 -0.24 -1.41 15 4 S 0.01 0.26 22.48 -107.50 -2.42 -2.15 15 5 C -0.25 -4.07 11.08 28.81 0.32 -3.75 15 6 C -0.08 -1.31 10.12 -40.56 -0.41 -1.72 15 7 C -0.20 -4.00 5.86 -106.89 -0.63 -4.63 15 8 C 0.00 0.00 9.77 -38.33 -0.37 -0.38 15 9 C -0.27 -5.87 4.79 -102.99 -0.49 -6.37 15 10 C 0.36 7.62 9.02 33.98 0.31 7.93 15 11 O -0.43 -10.75 12.46 5.47 0.07 -10.69 15 12 C 0.14 3.45 4.37 -104.78 -0.46 2.99 15 13 C -0.43 -11.25 6.85 -38.04 -0.26 -11.51 15 14 H 0.10 2.77 8.06 -52.49 -0.42 2.35 15 15 C 0.12 3.18 3.66 -17.29 -0.06 3.12 15 16 N -0.79 -21.15 13.92 55.56 0.77 -20.38 15 17 Si 0.89 20.76 24.11 -169.99 -4.10 16.66 15 18 H -0.27 -6.04 6.22 56.52 0.35 -5.69 15 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 20 H -0.25 -5.86 7.06 56.52 0.40 -5.46 15 21 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 22 H 0.04 0.78 7.52 -51.93 -0.39 0.39 15 23 H 0.08 1.59 7.10 -51.93 -0.37 1.22 15 24 H 0.15 1.94 8.06 -52.49 -0.42 1.52 15 25 H 0.13 1.73 8.06 -52.49 -0.42 1.31 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.07 1.19 8.06 -52.49 -0.42 0.76 15 28 H 0.28 7.03 8.29 -40.82 -0.34 6.69 15 LS Contribution 251.93 15.07 3.80 3.80 Total: -1.00 -28.06 251.93 -6.94 -35.00 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -2.48 Total: -1.01 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.58 Total: -21.24 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.77 Total: -20.38 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.10 Total: 16.66 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.42 Total: -2.15 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.06 -6.94 -35.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.801 kcal (2) G-P(sol) polarization free energy of solvation -28.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds