Wall clock time and date at job start Mon Mar 30 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39014 * 119.76027 * 2 1 4 4 S 1.76241 * 129.73337 * 359.91812 * 3 2 1 5 5 C 1.75416 * 91.60893 * 180.31248 * 4 3 2 6 6 C 1.32429 * 110.92163 * 0.02562 * 5 4 3 7 7 C 1.40583 * 120.97715 * 180.26586 * 3 2 1 8 8 C 1.41331 * 119.76278 * 359.73471 * 7 3 2 9 9 C 1.38433 * 120.71633 * 0.02562 * 8 7 3 10 10 C 1.46328 * 120.39021 * 179.97438 * 9 8 7 11 11 O 1.21378 * 120.00066 * 174.70025 * 10 9 8 12 12 C 1.40236 * 119.76083 * 179.76380 * 2 1 3 13 13 C 1.40332 * 120.58094 * 0.02562 * 12 2 1 14 14 H 1.08000 * 120.00087 * 301.39840 * 13 12 2 15 15 C 1.40246 * 120.00511 * 121.11554 * 13 12 2 16 16 N 1.30676 * 120.00206 * 171.69147 * 15 13 12 17 17 Si 1.86801 * 119.99549 * 351.69921 * 15 13 12 18 18 H 1.48490 * 109.47385 * 93.48406 * 17 15 13 19 19 H 1.48500 * 109.46793 * 213.48986 * 17 15 13 20 20 H 1.48502 * 109.47112 * 333.48210 * 17 15 13 21 21 H 1.09004 * 109.47134 * 270.23578 * 1 2 3 22 22 H 1.09001 * 109.47295 * 30.23596 * 1 2 3 23 23 H 1.09002 * 109.47115 * 150.23385 * 1 2 3 24 24 H 1.07997 * 124.54521 * 179.97438 * 5 4 3 25 25 H 1.07999 * 122.05383 * 180.02562 * 6 5 4 26 26 H 1.07998 * 119.64309 * 180.02562 * 8 7 3 27 27 H 1.07994 * 120.00076 * 354.69548 * 10 9 8 28 28 H 0.97001 * 119.99559 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.2068 0.0000 4 16 1.5796 2.8575 -0.0019 5 6 3.2047 3.5179 -0.0100 6 6 4.1084 2.5499 -0.0115 7 6 3.6025 1.2367 -0.0056 8 6 4.3299 0.0250 -0.0056 9 6 3.6736 -1.1939 -0.0008 10 6 4.4339 -2.4441 -0.0014 11 8 3.8554 -3.5063 0.1000 12 6 2.2030 -1.2174 0.0050 13 6 1.5086 -2.4369 0.0095 14 1 0.8177 -2.6619 0.8085 15 6 1.7074 -3.3609 -1.0266 16 7 1.1901 -4.5580 -0.9426 17 14 2.7118 -2.8804 -2.5265 18 1 4.1257 -3.2878 -2.3267 19 1 2.1651 -3.5620 -3.7273 20 1 2.6427 -1.4094 -2.7180 21 1 -0.3633 0.0042 1.0277 22 1 -0.3634 0.8879 -0.5175 23 1 -0.3633 -0.8921 -0.5102 24 1 3.4371 4.5726 -0.0140 25 1 5.1686 2.7557 -0.0158 26 1 5.4096 0.0502 -0.0095 27 1 5.5098 -2.4217 -0.0921 28 1 1.3280 -5.1972 -1.6591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396346356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:13 Heat of formation + Delta-G solvation = -4.090007 kcal Electronic energy + Delta-G solvation = -15344.487635 eV Core-core repulsion = 12837.424341 eV Total energy + Delta-G solvation = -2507.063294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59825 -39.12957 -36.52858 -34.77625 -33.39989 -30.98404 -28.44337 -26.96908 -25.09928 -23.26765 -21.53884 -20.84296 -19.40918 -17.92832 -17.37522 -16.96193 -16.48136 -15.55259 -15.23040 -15.11956 -14.92737 -14.70272 -14.43086 -13.82397 -13.57672 -13.50813 -13.32808 -12.75522 -12.55424 -12.40950 -12.05976 -11.66830 -11.46326 -11.30692 -11.15309 -10.24298 -10.12859 -9.03929 -8.70545 -8.41375 -6.39438 -0.11888 0.12250 0.81111 1.12187 1.22348 1.29774 1.36086 1.59004 1.91028 2.14456 2.79925 3.22671 3.61761 3.95767 4.20594 4.43737 4.57626 4.61234 4.73275 4.79653 4.85325 5.02962 5.12667 5.18527 5.30265 5.51850 5.54004 5.76285 5.89816 6.04448 6.27782 6.68833 6.87738 6.95625 8.37069 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031142 B = 0.009595 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.891703 B = 2917.551358 C = 3350.795322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.173 4.173 3 C -0.088 4.088 4 S 0.036 5.964 5 C -0.226 4.226 6 C -0.093 4.093 7 C -0.188 4.188 8 C 0.004 3.996 9 C -0.279 4.279 10 C 0.359 3.641 11 O -0.473 6.473 12 C 0.125 3.875 13 C -0.475 4.475 14 H 0.054 0.946 15 C 0.093 3.907 16 N -0.853 5.853 17 Si 0.931 3.069 18 H -0.252 1.252 19 H -0.277 1.277 20 H -0.254 1.254 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.192 0.808 25 H 0.169 0.831 26 H 0.164 0.836 27 H 0.135 0.865 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 13.145 -1.225 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.180 4.180 3 C -0.203 4.203 4 S 0.298 5.702 5 C -0.358 4.358 6 C -0.122 4.122 7 C -0.194 4.194 8 C -0.016 4.016 9 C -0.282 4.282 10 C 0.221 3.779 11 O -0.348 6.348 12 C 0.119 3.881 13 C -0.505 4.505 14 H 0.072 0.928 15 C -0.121 4.121 16 N -0.480 5.480 17 Si 0.753 3.247 18 H -0.176 1.176 19 H -0.203 1.203 20 H -0.178 1.178 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.209 0.791 25 H 0.186 0.814 26 H 0.181 0.819 27 H 0.151 0.849 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.699 13.083 -1.231 14.324 hybrid contribution 1.166 -0.998 -0.372 1.580 sum 6.865 12.085 -1.602 13.991 Atomic orbital electron populations 1.20412 0.91369 1.01340 1.00932 1.19812 0.96011 0.90542 1.11682 1.22853 0.97167 0.96755 1.03558 1.83874 1.09951 0.96069 1.80332 1.25284 0.93890 1.04065 1.12576 1.20155 1.01877 0.89428 1.00729 1.18433 0.91517 0.95094 1.14360 1.21414 1.00151 0.88910 0.91129 1.22203 0.94836 0.96098 1.15091 1.24179 0.95518 0.86910 0.71332 1.90627 1.74906 1.34047 1.35258 1.18566 0.90601 0.92006 0.86922 1.18658 1.23666 0.99197 1.09006 0.92821 1.26265 0.92355 0.92508 1.00982 1.69581 1.39697 1.05167 1.33597 0.86104 0.80635 0.80033 0.77905 1.17636 1.20336 1.17819 0.92692 0.92118 0.92579 0.79101 0.81418 0.81852 0.84948 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.52 9.45 71.23 0.67 -2.85 15 2 C -0.17 -7.91 5.96 -19.19 -0.11 -8.02 15 3 C -0.09 -3.50 6.29 23.03 0.14 -3.35 15 4 S 0.04 1.15 22.48 -56.49 -1.27 -0.12 15 5 C -0.23 -5.73 11.08 66.70 0.74 -4.99 15 6 C -0.09 -2.50 10.12 21.77 0.22 -2.28 15 7 C -0.19 -6.60 5.86 -21.33 -0.13 -6.73 15 8 C 0.00 0.12 9.77 23.08 0.23 0.35 15 9 C -0.28 -11.86 4.79 -18.81 -0.09 -11.95 15 10 C 0.36 14.55 9.02 69.93 0.63 15.18 15 11 O -0.47 -23.95 12.46 -3.33 -0.04 -23.99 15 12 C 0.13 6.23 4.37 -19.96 -0.09 6.14 15 13 C -0.48 -26.83 6.85 23.27 0.16 -26.68 15 14 H 0.05 3.36 8.06 -2.91 -0.02 3.34 15 15 C 0.09 5.21 3.66 85.35 0.31 5.52 15 16 N -0.85 -49.65 13.92 21.88 0.30 -49.35 15 17 Si 0.93 43.78 24.11 68.60 1.65 45.44 15 18 H -0.25 -11.08 6.22 99.48 0.62 -10.47 15 19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 15 20 H -0.25 -11.96 7.06 99.48 0.70 -11.26 15 21 H 0.05 2.20 8.14 -2.38 -0.02 2.18 15 22 H 0.06 2.24 7.52 -2.39 -0.02 2.22 15 23 H 0.06 2.55 7.10 -2.39 -0.02 2.53 15 24 H 0.19 3.36 8.06 -2.91 -0.02 3.34 15 25 H 0.17 3.18 8.06 -2.91 -0.02 3.16 15 26 H 0.16 3.84 8.06 -2.91 -0.02 3.81 15 27 H 0.13 3.75 8.06 -2.91 -0.02 3.73 15 28 H 0.28 15.26 8.29 -92.71 -0.77 14.49 15 Total: -1.00 -66.86 251.93 4.42 -62.43 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.09 Total: 5.25 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 2.69 Total: -39.66 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.30 Total: -49.35 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.04 Total: -23.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.65 Total: 45.44 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.27 Total: -0.12 kcal Total: -66.86 4.42 -62.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.343 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds