Wall clock time and date at job start Mon Mar 30 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36949 * 119.71551 * 2 1 4 4 C 1.41589 * 121.91459 * 180.02562 * 3 2 1 5 5 C 1.45352 * 128.61738 * 180.02562 * 4 3 2 6 6 C 1.31997 * 114.98283 * 179.97438 * 5 4 3 7 7 S 1.75286 * 111.33058 * 359.97438 * 6 5 4 8 8 C 1.39638 * 119.67400 * 0.02562 * 4 3 2 9 9 C 1.42156 * 119.89558 * 0.02562 * 8 4 3 10 10 C 1.40164 * 120.45847 * 180.02562 * 9 8 4 11 11 H 1.07997 * 120.00298 * 126.27771 * 10 9 8 12 12 C 1.40483 * 119.99981 * 306.27324 * 10 9 8 13 13 N 1.30539 * 120.00158 * 172.92477 * 12 10 9 14 14 Si 1.86798 * 119.99957 * 352.92279 * 12 10 9 15 15 H 1.48494 * 109.47245 * 96.11950 * 14 12 10 16 16 H 1.48500 * 109.46890 * 216.12049 * 14 12 10 17 17 H 1.48502 * 109.46912 * 336.11706 * 14 12 10 18 18 C 1.40033 * 119.71062 * 179.73417 * 2 1 3 19 19 C 1.46237 * 120.56603 * 359.97438 * 18 2 1 20 20 O 1.21394 * 120.00167 * 186.35075 * 19 18 2 21 21 H 1.08995 * 109.47384 * 87.47296 * 1 2 3 22 22 H 1.09000 * 109.46519 * 327.48139 * 1 2 3 23 23 H 1.08993 * 109.47054 * 207.47882 * 1 2 3 24 24 H 1.07997 * 119.04324 * 0.02562 * 3 2 1 25 25 H 1.07994 * 122.50929 * 359.97029 * 5 4 3 26 26 H 1.07998 * 124.33218 * 179.97438 * 6 5 4 27 27 H 0.96993 * 120.00261 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.00246 * 6.34815 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1894 0.0000 4 6 3.6007 1.2437 -0.0005 5 6 4.4636 2.4134 -0.0001 6 6 5.7574 2.1517 -0.0003 7 16 6.0586 0.4249 -0.0002 8 6 4.3380 0.0579 -0.0016 9 6 3.6656 -1.1946 -0.0027 10 6 4.3940 -2.3921 -0.0033 11 1 4.2016 -3.1416 0.7501 12 6 5.3743 -2.6175 -0.9839 13 7 6.1469 -3.6668 -0.9055 14 14 5.5723 -1.4156 -2.4002 15 1 6.6533 -0.4487 -2.0815 16 1 5.9230 -2.1605 -3.6361 17 1 4.2980 -0.6824 -2.6090 18 6 2.2010 -1.2162 0.0056 19 6 1.4760 -2.4862 0.0121 20 8 2.0824 -3.5308 0.1332 21 1 -0.3634 0.0453 -1.0266 22 1 -0.3632 0.8666 0.5525 23 1 -0.3633 -0.9117 0.4742 24 1 1.6257 2.1128 0.0004 25 1 4.0753 3.4211 0.0003 26 1 6.5312 2.9050 -0.0004 27 1 6.8235 -3.8226 -1.5828 28 1 0.4010 -2.4948 -0.0909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396346394.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:52 Heat of formation + Delta-G solvation = 3.609878 kcal Electronic energy + Delta-G solvation = -15310.791955 eV Core-core repulsion = 12804.062554 eV Total energy + Delta-G solvation = -2506.729402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.67213 -37.09157 -34.60850 -33.99199 -31.44421 -29.22665 -26.68180 -25.61127 -23.45386 -21.32838 -20.23140 -18.90370 -17.84807 -16.54351 -15.51209 -15.12504 -14.80163 -13.91696 -13.61798 -13.51452 -13.16275 -12.79011 -12.61022 -12.40786 -12.08179 -11.97547 -11.81121 -11.35347 -11.14321 -11.00726 -10.25625 -10.19659 -9.76858 -9.56298 -9.46879 -8.37556 -8.14444 -7.49408 -7.04833 -6.64604 -4.64705 1.31850 2.29157 2.31877 2.65202 2.90234 3.10258 3.18375 3.23457 3.71177 3.92549 4.44582 4.96064 5.23679 5.39562 5.64882 5.72408 5.80634 6.04456 6.09117 6.17001 6.39712 6.43849 6.57484 6.71430 6.92309 7.04088 7.19640 7.41857 7.49959 7.79546 8.26642 8.36961 8.57541 8.84451 9.96176 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.015675 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.377111 B = 1785.891581 C = 2971.699274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.001 3.999 3 C -0.211 4.211 4 C -0.025 4.025 5 C -0.134 4.134 6 C -0.216 4.216 7 S 0.079 5.921 8 C -0.201 4.201 9 C 0.161 3.839 10 C -0.403 4.403 11 H 0.114 0.886 12 C 0.091 3.909 13 N -0.786 5.786 14 Si 0.830 3.170 15 H -0.208 1.208 16 H -0.270 1.270 17 H -0.242 1.242 18 C -0.292 4.292 19 C 0.363 3.637 20 O -0.470 6.470 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.130 0.870 26 H 0.154 0.846 27 H 0.289 0.711 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 9.211 -0.807 9.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.001 4.001 3 C -0.232 4.232 4 C -0.033 4.033 5 C -0.166 4.166 6 C -0.351 4.351 7 S 0.344 5.656 8 C -0.316 4.316 9 C 0.154 3.846 10 C -0.431 4.431 11 H 0.132 0.868 12 C -0.130 4.130 13 N -0.409 5.409 14 Si 0.653 3.347 15 H -0.132 1.132 16 H -0.196 1.196 17 H -0.165 1.165 18 C -0.299 4.299 19 C 0.227 3.773 20 O -0.348 6.348 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.148 0.852 26 H 0.172 0.828 27 H 0.100 0.900 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.474 7.624 -0.810 7.808 hybrid contribution -1.106 1.495 -0.693 1.984 sum -2.579 9.119 -1.503 9.595 Atomic orbital electron populations 1.20847 0.92553 1.02094 1.01787 1.19446 0.94158 0.92510 0.93942 1.19871 0.90893 0.96356 1.16123 1.19181 0.94027 0.90628 0.99509 1.20916 0.92387 0.98256 1.05027 1.25140 0.99802 1.00633 1.09491 1.84428 1.05865 0.98132 1.77205 1.23070 0.94476 0.97407 1.16659 1.18107 0.90208 0.89830 0.86490 1.19598 1.10520 1.01802 1.11146 0.86826 1.26059 0.92091 0.95550 0.99312 1.69473 1.13660 1.24958 1.32850 0.87353 0.83747 0.82420 0.81170 1.13244 1.19552 1.16490 1.21254 0.92745 0.93784 1.22077 1.23079 0.92648 0.87580 0.73998 1.90530 1.72023 1.35053 1.37181 0.91519 0.92063 0.91694 0.87981 0.85176 0.82839 0.89958 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.54 36.01 0.34 -1.34 15 2 C 0.00 0.03 5.89 -104.42 -0.62 -0.59 15 3 C -0.21 -4.16 9.64 -38.77 -0.37 -4.54 15 4 C -0.02 -0.53 6.03 -105.27 -0.63 -1.16 15 5 C -0.13 -2.41 10.38 -38.67 -0.40 -2.81 15 6 C -0.22 -3.80 11.03 28.82 0.32 -3.48 15 7 S 0.08 1.68 18.01 -107.50 -1.94 -0.26 15 8 C -0.20 -4.76 4.66 -37.56 -0.17 -4.94 15 9 C 0.16 4.11 4.61 -104.35 -0.48 3.63 15 10 C -0.40 -11.16 7.58 -38.01 -0.29 -11.45 15 11 H 0.11 3.46 7.07 -52.49 -0.37 3.09 15 12 C 0.09 2.42 5.22 -17.26 -0.09 2.33 15 13 N -0.79 -21.15 13.91 55.58 0.77 -20.38 15 14 Si 0.83 19.40 24.04 -169.99 -4.09 15.31 15 15 H -0.21 -4.45 5.51 59.69 0.33 -4.12 15 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 17 H -0.24 -5.99 6.86 56.52 0.39 -5.60 15 18 C -0.29 -6.75 6.06 -102.70 -0.62 -7.37 15 19 C 0.36 7.96 10.77 33.94 0.37 8.33 15 20 O -0.47 -12.25 14.95 5.46 0.08 -12.17 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.06 0.77 8.09 -51.93 -0.42 0.35 15 23 H 0.06 0.87 6.26 -51.93 -0.32 0.54 15 24 H 0.10 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.13 1.91 8.06 -52.49 -0.42 1.48 15 26 H 0.15 2.12 8.06 -52.49 -0.42 1.70 15 27 H 0.29 7.02 8.29 -40.82 -0.34 6.68 15 28 H 0.07 1.16 6.41 -52.49 -0.34 0.83 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -29.70 250.22 -6.41 -36.11 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.36 Total: 0.99 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.65 Total: -23.38 kcal Atomic # 7 Polarization: -21.15 SS G_CDS: 0.77 Total: -20.38 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.09 Total: 15.31 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.94 Total: -0.26 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.70 -6.41 -36.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346394.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.722 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds