Wall clock time and date at job start Mon Mar 30 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36949 * 119.71551 * 2 1 4 4 C 1.41589 * 121.91459 * 180.02562 * 3 2 1 5 5 C 1.45352 * 128.61738 * 180.02562 * 4 3 2 6 6 C 1.31997 * 114.98283 * 179.97438 * 5 4 3 7 7 S 1.75286 * 111.33058 * 359.97438 * 6 5 4 8 8 C 1.39638 * 119.67400 * 0.02562 * 4 3 2 9 9 C 1.42156 * 119.89558 * 0.02562 * 8 4 3 10 10 C 1.40164 * 120.45847 * 180.02562 * 9 8 4 11 11 H 1.07997 * 120.00298 * 126.27771 * 10 9 8 12 12 C 1.40483 * 119.99981 * 306.27324 * 10 9 8 13 13 N 1.30539 * 120.00158 * 172.92477 * 12 10 9 14 14 Si 1.86798 * 119.99957 * 352.92279 * 12 10 9 15 15 H 1.48494 * 109.47245 * 96.11950 * 14 12 10 16 16 H 1.48500 * 109.46890 * 216.12049 * 14 12 10 17 17 H 1.48502 * 109.46912 * 336.11706 * 14 12 10 18 18 C 1.40033 * 119.71062 * 179.73417 * 2 1 3 19 19 C 1.46237 * 120.56603 * 359.97438 * 18 2 1 20 20 O 1.21394 * 120.00167 * 186.35075 * 19 18 2 21 21 H 1.08995 * 109.47384 * 87.47296 * 1 2 3 22 22 H 1.09000 * 109.46519 * 327.48139 * 1 2 3 23 23 H 1.08993 * 109.47054 * 207.47882 * 1 2 3 24 24 H 1.07997 * 119.04324 * 0.02562 * 3 2 1 25 25 H 1.07994 * 122.50929 * 359.97029 * 5 4 3 26 26 H 1.07998 * 124.33218 * 179.97438 * 6 5 4 27 27 H 0.96993 * 120.00261 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.00246 * 6.34815 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1894 0.0000 4 6 3.6007 1.2437 -0.0005 5 6 4.4636 2.4134 -0.0001 6 6 5.7574 2.1517 -0.0003 7 16 6.0586 0.4249 -0.0002 8 6 4.3380 0.0579 -0.0016 9 6 3.6656 -1.1946 -0.0027 10 6 4.3940 -2.3921 -0.0033 11 1 4.2016 -3.1416 0.7501 12 6 5.3743 -2.6175 -0.9839 13 7 6.1469 -3.6668 -0.9055 14 14 5.5723 -1.4156 -2.4002 15 1 6.6533 -0.4487 -2.0815 16 1 5.9230 -2.1605 -3.6361 17 1 4.2980 -0.6824 -2.6090 18 6 2.2010 -1.2162 0.0056 19 6 1.4760 -2.4862 0.0121 20 8 2.0824 -3.5308 0.1332 21 1 -0.3634 0.0453 -1.0266 22 1 -0.3632 0.8666 0.5525 23 1 -0.3633 -0.9117 0.4742 24 1 1.6257 2.1128 0.0004 25 1 4.0753 3.4211 0.0003 26 1 6.5312 2.9050 -0.0004 27 1 6.8235 -3.8226 -1.5828 28 1 0.4010 -2.4948 -0.0909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396346394.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:52 Heat of formation + Delta-G solvation = -15.622279 kcal Electronic energy + Delta-G solvation = -15311.625924 eV Core-core repulsion = 12804.062554 eV Total energy + Delta-G solvation = -2507.563371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.38659 -38.88490 -36.21498 -35.74553 -33.15337 -30.81856 -28.27482 -27.25067 -25.10322 -22.99836 -21.88844 -20.49561 -19.62431 -18.23960 -17.28188 -16.80478 -16.52607 -15.52254 -15.25956 -15.20058 -14.88857 -14.42581 -14.17962 -13.90953 -13.77255 -13.63725 -13.25488 -13.03044 -12.68215 -12.56340 -12.10836 -11.87912 -11.36607 -11.31469 -11.12315 -10.17238 -9.83889 -9.16808 -8.92924 -8.33440 -6.61375 -0.33858 0.63635 0.72216 1.03818 1.23738 1.29612 1.35831 1.43310 2.04146 2.06387 2.60477 3.18877 3.73623 3.86847 4.24072 4.35904 4.52992 4.62689 4.72342 4.89086 4.99280 5.06990 5.11465 5.16811 5.29096 5.40458 5.58983 5.70609 5.84603 6.12694 6.27195 6.53124 6.61582 7.09477 8.14321 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.015675 C = 0.009420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.377111 B = 1785.891581 C = 2971.699274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.001 4.001 3 C -0.197 4.197 4 C -0.035 4.035 5 C -0.133 4.133 6 C -0.190 4.190 7 S 0.025 5.975 8 C -0.235 4.235 9 C 0.143 3.857 10 C -0.449 4.449 11 H 0.060 0.940 12 C 0.059 3.941 13 N -0.843 5.843 14 Si 0.878 3.122 15 H -0.178 1.178 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.312 4.312 19 C 0.365 3.635 20 O -0.518 6.518 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.147 0.853 25 H 0.178 0.822 26 H 0.200 0.800 27 H 0.294 0.706 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 13.892 -1.380 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.003 4.003 3 C -0.217 4.217 4 C -0.044 4.044 5 C -0.163 4.163 6 C -0.323 4.323 7 S 0.288 5.712 8 C -0.350 4.350 9 C 0.137 3.863 10 C -0.479 4.479 11 H 0.078 0.922 12 C -0.156 4.156 13 N -0.470 5.470 14 Si 0.698 3.302 15 H -0.101 1.101 16 H -0.190 1.190 17 H -0.188 1.188 18 C -0.318 4.318 19 C 0.231 3.769 20 O -0.398 6.398 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.094 0.906 24 H 0.165 0.835 25 H 0.195 0.805 26 H 0.216 0.784 27 H 0.105 0.895 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.782 12.334 -1.372 12.974 hybrid contribution -0.722 0.317 -0.386 0.878 sum -4.504 12.651 -1.759 13.544 Atomic orbital electron populations 1.20957 0.88134 1.04116 1.03791 1.20019 0.97284 0.90937 0.92083 1.20538 0.90608 0.98145 1.12455 1.19879 0.95294 0.91123 0.98130 1.21285 0.91856 0.99034 1.04136 1.25583 1.01050 0.98431 1.07261 1.84557 1.05677 1.02298 1.78630 1.23187 0.95724 0.97570 1.18486 1.18427 0.91684 0.90089 0.86130 1.19231 1.13913 1.02117 1.12595 0.92234 1.26598 0.91631 0.96700 1.00678 1.69524 1.15748 1.27131 1.34554 0.86717 0.83421 0.81182 0.78856 1.10095 1.18963 1.18772 1.21860 0.92460 0.96184 1.21305 1.23979 0.94967 0.86383 0.71524 1.90547 1.73643 1.36671 1.38929 0.89340 0.89166 0.90637 0.83535 0.80462 0.78351 0.89498 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.54 71.24 0.68 -1.95 15 2 C 0.00 -0.04 5.89 -19.73 -0.12 -0.15 15 3 C -0.20 -6.77 9.64 22.79 0.22 -6.55 15 4 C -0.04 -1.37 6.03 -20.28 -0.12 -1.50 15 5 C -0.13 -4.06 10.38 23.20 0.24 -3.82 15 6 C -0.19 -5.82 11.03 66.92 0.74 -5.08 15 7 S 0.03 1.05 18.01 -56.49 -1.02 0.04 15 8 C -0.24 -11.06 4.66 23.58 0.11 -10.95 15 9 C 0.14 7.56 4.61 -19.69 -0.09 7.47 15 10 C -0.45 -26.94 7.58 23.29 0.18 -26.77 15 11 H 0.06 4.07 7.07 -2.91 -0.02 4.05 15 12 C 0.06 3.38 5.22 85.43 0.45 3.82 15 13 N -0.84 -49.37 13.91 21.92 0.30 -49.06 15 14 Si 0.88 41.72 24.04 68.60 1.65 43.37 15 15 H -0.18 -7.50 5.51 97.46 0.54 -6.97 15 16 H -0.26 -11.96 7.11 99.48 0.71 -11.26 15 17 H -0.26 -13.16 6.86 99.48 0.68 -12.48 15 18 C -0.31 -14.26 6.06 -18.62 -0.11 -14.38 15 19 C 0.37 15.95 10.77 69.90 0.75 16.70 15 20 O -0.52 -28.39 14.95 -3.38 -0.05 -28.45 15 21 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 22 H 0.09 1.63 8.09 -2.39 -0.02 1.61 15 23 H 0.07 1.60 6.26 -2.39 -0.01 1.59 15 24 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.18 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.20 4.26 8.06 -2.91 -0.02 4.24 15 27 H 0.29 15.48 8.29 -92.71 -0.77 14.71 15 28 H 0.13 4.02 6.41 -2.91 -0.02 4.00 15 Total: -1.00 -73.28 250.22 4.80 -68.48 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.99 Total: 8.77 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 2.92 Total: -43.15 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.30 Total: -49.06 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.65 Total: 43.37 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -1.02 Total: 0.04 kcal Total: -73.28 4.80 -68.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396346394.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.858 kcal (2) G-P(sol) polarization free energy of solvation -73.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds