Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38345 * 119.98575 * 2 1 4 4 C 1.37251 * 120.78487 * 180.02562 * 3 2 1 5 5 C 1.41836 * 120.78063 * 359.97438 * 4 3 2 6 6 C 1.39858 * 128.46624 * 180.02562 * 5 4 3 7 7 C 1.36912 * 115.03989 * 179.97438 * 6 5 4 8 8 C 1.39872 * 124.82632 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00134 * 359.95508 * 8 7 6 10 10 C 1.40231 * 120.00004 * 179.97438 * 8 7 6 11 11 N 1.30738 * 119.99562 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00119 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47285 * 59.99078 * 12 10 8 14 14 H 1.48493 * 109.47358 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46655 * 299.99472 * 12 10 8 16 16 S 1.75458 * 110.34501 * 359.97438 * 7 6 5 17 17 C 1.40324 * 118.68902 * 0.02895 * 5 4 3 18 18 C 1.39595 * 119.97551 * 180.02562 * 2 1 3 19 19 C 1.46678 * 120.00947 * 359.72636 * 18 2 1 20 20 O 1.21323 * 119.99939 * 180.02562 * 19 18 2 21 21 H 1.08998 * 109.47135 * 269.97999 * 1 2 3 22 22 H 1.09009 * 109.46469 * 29.97965 * 1 2 3 23 23 H 1.08997 * 109.47403 * 149.97278 * 1 2 3 24 24 H 1.07994 * 119.60367 * 0.02562 * 3 2 1 25 25 H 1.08008 * 119.60713 * 179.97438 * 4 3 2 26 26 H 1.08000 * 122.47814 * 359.93169 * 6 5 4 27 27 H 0.97005 * 119.99349 * 180.02562 * 11 10 8 28 28 H 1.07993 * 120.00055 * 359.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1983 0.0000 4 6 3.5708 1.2174 -0.0005 5 6 4.3136 0.0091 -0.0005 6 6 5.7021 -0.1586 -0.0005 7 6 6.1286 -1.4596 0.0000 8 6 7.4686 -1.8609 -0.0004 9 1 8.2542 -1.1198 -0.0019 10 6 7.7918 -3.2254 0.0008 11 7 6.8407 -4.1224 0.0027 12 14 9.5812 -3.7614 0.0009 13 1 10.2566 -3.2315 1.2127 14 1 9.6538 -5.2445 0.0029 15 1 10.2560 -3.2339 -1.2123 16 16 4.7555 -2.5518 0.0013 17 6 3.6177 -1.2094 -0.0006 18 6 2.2045 -1.2092 -0.0005 19 6 1.4708 -2.4793 0.0050 20 8 2.0771 -3.5301 0.0050 21 1 -0.3633 -0.0004 1.0276 22 1 -0.3632 0.8903 -0.5136 23 1 -0.3634 -0.8897 -0.5142 24 1 1.6518 2.1296 0.0004 25 1 4.0913 2.1638 -0.0009 26 1 6.3871 0.6764 -0.0016 27 1 7.0643 -5.0663 0.0039 28 1 0.3908 -2.4790 0.0098 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396348201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = -38.410167 kcal Electronic energy + Delta-G solvation = -14747.389925 eV Core-core repulsion = 12238.838398 eV Total energy + Delta-G solvation = -2508.551528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57452 -39.11769 -36.87045 -35.37514 -32.38792 -31.48757 -28.98124 -25.97561 -25.74581 -23.18739 -21.88422 -20.78748 -19.56665 -17.60050 -17.53039 -16.69959 -16.42033 -15.42034 -15.37487 -15.21384 -15.04006 -14.43478 -14.19576 -13.71259 -13.46090 -13.26701 -13.02535 -12.95289 -12.79063 -12.21584 -12.02784 -11.84614 -11.73587 -11.08523 -10.96950 -10.33528 -10.19467 -9.14013 -8.90410 -8.34023 -6.56547 -0.23738 0.52289 1.18733 1.31494 1.41975 1.49416 1.56869 1.94400 1.98913 2.13193 2.85272 3.23497 3.49233 4.12403 4.17703 4.39065 4.58286 4.74971 4.82994 4.88476 5.02017 5.06110 5.16460 5.35826 5.44317 5.50330 5.65087 5.74229 5.91358 6.05247 6.27003 6.47516 6.53959 6.63661 7.94930 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.007356 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.034499 B = 3805.517533 C = 4521.406971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.124 4.124 5 C -0.032 4.032 6 C -0.396 4.396 7 C 0.004 3.996 8 C -0.419 4.419 9 H 0.102 0.898 10 C 0.014 3.986 11 N -0.804 5.804 12 Si 1.016 2.984 13 H -0.253 1.253 14 H -0.260 1.260 15 H -0.253 1.253 16 S 0.150 5.850 17 C -0.241 4.241 18 C -0.168 4.168 19 C 0.372 3.628 20 O -0.499 6.499 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.156 0.844 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.311 0.689 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 3.856 0.020 8.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.040 4.040 6 C -0.421 4.421 7 C -0.115 4.115 8 C -0.452 4.452 9 H 0.119 0.881 10 C -0.204 4.204 11 N -0.430 5.430 12 Si 0.833 3.167 13 H -0.177 1.177 14 H -0.183 1.183 15 H -0.177 1.177 16 S 0.411 5.589 17 C -0.357 4.357 18 C -0.174 4.174 19 C 0.234 3.766 20 O -0.376 6.376 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.173 0.827 25 H 0.142 0.858 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.393 1.500 0.022 7.544 hybrid contribution 1.310 1.494 0.002 1.987 sum -6.083 2.994 0.024 6.780 Atomic orbital electron populations 1.20869 0.87461 1.04305 1.03655 1.20236 0.97562 0.90678 0.99819 1.20908 0.92884 0.98561 1.01900 1.21357 0.94921 0.95653 1.02442 1.18335 0.93033 0.93492 0.99122 1.19746 0.93476 0.95184 1.33712 1.22096 0.98300 0.95653 0.95428 1.19630 0.91678 0.93893 1.40026 0.88057 1.27403 1.06578 0.95458 0.91007 1.68711 1.37180 1.04757 1.32337 0.84709 0.73114 0.78196 0.80658 1.17669 1.18325 1.17658 1.85399 0.92255 1.03758 1.77489 1.24325 0.98669 1.00495 1.12245 1.20338 0.90800 0.97170 1.09089 1.24769 0.96680 0.85866 0.69309 1.90519 1.74486 1.35708 1.36889 0.89584 0.89398 0.90262 0.82652 0.85814 0.87882 0.87560 0.82759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.50 71.24 0.68 -1.37 15 2 C -0.08 -2.58 5.93 -19.51 -0.12 -2.70 15 3 C -0.12 -3.98 9.62 22.06 0.21 -3.77 15 4 C -0.12 -5.02 10.07 22.93 0.23 -4.79 15 5 C -0.03 -1.63 5.85 -21.49 -0.13 -1.76 15 6 C -0.40 -21.81 10.14 22.35 0.23 -21.58 15 7 C 0.00 0.23 6.11 22.35 0.14 0.37 15 8 C -0.42 -22.56 9.27 23.15 0.21 -22.35 15 9 H 0.10 5.11 7.85 -2.91 -0.02 5.08 15 10 C 0.01 0.67 5.50 85.34 0.47 1.14 15 11 N -0.80 -41.19 10.58 21.88 0.23 -40.95 15 12 Si 1.02 36.02 29.56 68.60 2.03 38.04 15 13 H -0.25 -8.63 7.11 99.48 0.71 -7.93 15 14 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 15 H -0.25 -8.63 7.11 99.48 0.71 -7.92 15 16 S 0.15 8.38 18.22 -56.49 -1.03 7.35 15 17 C -0.24 -12.35 6.35 23.54 0.15 -12.20 15 18 C -0.17 -6.89 5.89 -19.99 -0.12 -7.00 15 19 C 0.37 13.43 10.85 70.03 0.76 14.19 15 20 O -0.50 -22.81 15.77 -3.16 -0.05 -22.86 15 21 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.09 1.32 8.09 -2.38 -0.02 1.30 15 23 H 0.08 1.28 6.30 -2.39 -0.02 1.26 15 24 H 0.16 3.62 8.06 -2.91 -0.02 3.59 15 25 H 0.12 4.43 8.06 -2.91 -0.02 4.40 15 26 H 0.10 5.42 8.06 -2.91 -0.02 5.40 15 27 H 0.31 14.19 8.29 -92.70 -0.77 13.42 15 28 H 0.16 3.55 6.32 -2.91 -0.02 3.53 15 Total: -1.00 -69.68 259.69 5.08 -64.59 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.19 Total: 15.64 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 2.72 Total: -61.81 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.23 Total: -40.95 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 8.38 SS G_CDS: -1.03 Total: 7.35 kcal Total: -69.68 5.08 -64.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396348201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.184 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds