Wall clock time and date at job start Mon Mar 30 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37933 * 119.61128 * 2 1 4 4 C 1.38061 * 120.43109 * 179.72569 * 3 2 1 5 5 C 1.39336 * 120.06041 * 0.54320 * 4 3 2 6 6 C 1.46756 * 120.04333 * 179.70875 * 5 4 3 7 7 O 1.21308 * 120.00449 * 353.60433 * 6 5 4 8 8 C 1.42176 * 119.90813 * 359.72745 * 5 4 3 9 9 C 1.46226 * 129.54749 * 180.02562 * 8 5 4 10 10 C 1.40949 * 123.29446 * 359.97438 * 9 8 5 11 11 H 1.08004 * 119.99679 * 318.76404 * 10 9 8 12 12 C 1.39709 * 119.99811 * 138.75553 * 10 9 8 13 13 N 1.31066 * 120.00612 * 352.19899 * 12 10 9 14 14 Si 1.86809 * 119.99819 * 172.19994 * 12 10 9 15 15 H 1.48501 * 109.46905 * 89.99860 * 14 12 10 16 16 H 1.48499 * 109.46924 * 210.00083 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99777 * 14 12 10 18 18 C 1.36663 * 113.42158 * 180.02562 * 9 8 5 19 19 S 1.69999 * 111.87471 * 359.97438 * 18 9 8 20 20 C 1.39281 * 119.10421 * 0.02562 * 8 5 4 21 21 H 1.08997 * 109.46905 * 269.72841 * 1 2 3 22 22 H 1.09000 * 109.47152 * 149.73289 * 1 2 3 23 23 H 1.08996 * 109.46924 * 29.72911 * 1 2 3 24 24 H 1.07997 * 119.78497 * 359.97438 * 3 2 1 25 25 H 1.08003 * 119.97481 * 180.27514 * 4 3 2 26 26 H 1.08000 * 119.99444 * 173.60242 * 6 5 4 27 27 H 0.96993 * 120.00441 * 180.02562 * 13 12 10 28 28 H 1.07997 * 124.06473 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.1992 0.0000 4 6 3.5690 1.2189 0.0057 5 6 4.2842 0.0231 0.0001 6 6 5.7516 0.0446 -0.0003 7 8 6.3428 1.0979 -0.1128 8 6 3.5903 -1.2178 -0.0057 9 6 4.1201 -2.5807 -0.0116 10 6 5.4985 -2.8750 -0.0130 11 1 6.1734 -2.2972 -0.6271 12 6 5.9918 -3.9140 0.7802 13 7 5.2037 -4.5142 1.6384 14 14 7.7746 -4.4477 0.6176 15 1 8.6138 -3.6634 1.5588 16 1 7.8897 -5.8931 0.9382 17 1 8.2373 -4.2108 -0.7734 18 6 3.1481 -3.5414 -0.0167 19 16 1.5887 -2.8646 -0.0141 20 6 2.1975 -1.2152 -0.0061 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3633 -0.8876 -0.5180 23 1 -0.3633 0.8924 -0.5096 24 1 1.6387 2.1287 -0.0004 25 1 4.0951 2.1621 0.0102 26 1 6.3051 -0.8774 0.0996 27 1 5.5463 -5.2353 2.1894 28 1 3.3468 -4.6029 -0.0219 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396349214.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:54 Heat of formation + Delta-G solvation = -22.339940 kcal Electronic energy + Delta-G solvation = -14986.582424 eV Core-core repulsion = 12478.727753 eV Total energy + Delta-G solvation = -2507.854670 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87525 -39.21610 -36.94386 -34.31510 -33.38021 -30.16624 -29.25357 -27.35819 -24.29244 -24.18205 -21.94538 -21.20922 -18.84847 -18.19905 -16.98593 -16.84416 -16.28056 -15.87452 -15.47270 -15.32663 -14.84035 -14.63934 -14.59481 -13.68771 -13.25693 -13.19021 -13.02337 -12.88579 -12.77779 -12.41109 -12.29538 -11.84173 -11.65668 -11.33184 -11.04723 -10.51955 -9.98234 -9.21465 -8.58554 -8.34343 -6.34006 -0.44002 0.24188 1.05895 1.30501 1.40981 1.49139 1.52509 1.77576 1.88058 2.25430 2.81040 3.21829 3.56378 3.91405 4.03494 4.14472 4.36784 4.60663 4.66854 4.81612 4.82883 4.97397 5.12251 5.23745 5.27251 5.34472 5.48704 5.59980 5.91158 5.99273 6.38742 6.52205 6.79642 6.93688 8.48176 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022632 B = 0.009957 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.911929 B = 2811.295392 C = 3937.684538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 C -0.134 4.134 4 C -0.064 4.064 5 C -0.185 4.185 6 C 0.378 3.622 7 O -0.507 6.507 8 C -0.044 4.044 9 C 0.060 3.940 10 C -0.491 4.491 11 H 0.086 0.914 12 C 0.037 3.963 13 N -0.847 5.847 14 Si 0.970 3.030 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.256 1.256 18 C -0.339 4.339 19 S 0.093 5.907 20 C -0.181 4.181 21 H 0.087 0.913 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.170 0.830 25 H 0.143 0.857 26 H 0.128 0.872 27 H 0.281 0.719 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 6.093 -1.822 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.028 4.028 3 C -0.154 4.154 4 C -0.085 4.085 5 C -0.188 4.188 6 C 0.242 3.758 7 O -0.385 6.385 8 C -0.054 4.054 9 C 0.050 3.950 10 C -0.525 4.525 11 H 0.104 0.896 12 C -0.175 4.175 13 N -0.476 5.476 14 Si 0.791 3.209 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.475 4.475 19 S 0.356 5.644 20 C -0.296 4.296 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.119 0.881 24 H 0.188 0.812 25 H 0.161 0.839 26 H 0.144 0.856 27 H 0.092 0.908 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.659 5.692 -1.717 9.696 hybrid contribution 2.414 -0.486 0.261 2.477 sum -5.245 5.207 -1.456 7.533 Atomic orbital electron populations 1.20954 0.88190 1.04227 1.03773 1.20004 0.97662 0.89931 0.95236 1.21122 0.93255 0.98001 1.03016 1.21449 0.95022 0.96826 0.95235 1.20680 0.96160 0.92735 1.09204 1.24971 0.89695 0.93261 0.67894 1.90377 1.72845 1.36923 1.38333 1.20028 0.92819 0.94007 0.98557 1.17655 0.95054 0.87552 0.94691 1.19178 0.92134 1.16050 1.25131 0.89585 1.26483 1.03535 0.94560 0.92908 1.69928 1.39013 1.20329 1.18311 0.85372 0.77432 0.78103 0.79968 1.18875 1.19770 1.17990 1.24370 0.95627 1.02014 1.25447 1.81449 1.08116 0.94042 1.80743 1.22868 0.96533 0.98903 1.11295 0.89434 0.91672 0.88081 0.81212 0.83919 0.85631 0.90849 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.85 71.24 0.70 -1.89 15 2 C -0.02 -0.74 5.91 -19.57 -0.12 -0.85 15 3 C -0.13 -3.84 9.63 22.16 0.21 -3.63 15 4 C -0.06 -2.22 9.56 22.49 0.22 -2.00 15 5 C -0.18 -7.79 5.91 -19.81 -0.12 -7.91 15 6 C 0.38 16.11 10.85 70.05 0.76 16.87 15 7 O -0.51 -22.07 17.15 -3.12 -0.05 -22.12 15 8 C -0.04 -2.02 6.02 -19.97 -0.12 -2.14 15 9 C 0.06 3.11 5.44 -20.91 -0.11 2.99 15 10 C -0.49 -25.22 7.32 23.29 0.17 -25.05 15 11 H 0.09 4.18 5.90 -2.91 -0.02 4.16 15 12 C 0.04 1.87 5.37 85.16 0.46 2.33 15 13 N -0.85 -44.81 11.90 21.80 0.26 -44.55 15 14 Si 0.97 38.40 29.57 68.60 2.03 40.43 15 15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 16 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 17 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 18 C -0.34 -17.15 9.48 67.45 0.64 -16.51 15 19 S 0.09 3.81 22.20 -56.49 -1.25 2.55 15 20 C -0.18 -7.41 6.26 22.89 0.14 -7.27 15 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.06 1.53 7.54 -2.39 -0.02 1.51 15 23 H 0.10 1.63 8.07 -2.39 -0.02 1.61 15 24 H 0.17 3.28 8.06 -2.91 -0.02 3.26 15 25 H 0.14 4.39 7.63 -2.91 -0.02 4.37 15 26 H 0.13 5.51 4.43 -2.91 -0.01 5.50 15 27 H 0.28 13.73 8.30 -92.71 -0.77 12.96 15 28 H 0.12 6.71 7.52 -2.91 -0.02 6.68 15 Total: -1.00 -60.35 259.36 5.01 -55.34 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.20 Total: 13.41 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 2.83 Total: -45.06 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.26 Total: -44.55 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.25 Total: 2.55 kcal Total: -60.35 5.01 -55.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396349214.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.997 kcal (2) G-P(sol) polarization free energy of solvation -60.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds