Wall clock time and date at job start Mon Mar 30 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32461 * 124.59457 * 2 1 4 4 C 1.40602 * 115.94205 * 179.97438 * 3 2 1 5 5 C 1.41933 * 128.25300 * 180.02562 * 4 3 2 6 6 C 1.35123 * 122.02334 * 179.97438 * 5 4 3 7 7 C 1.41225 * 120.62291 * 0.29287 * 6 5 4 8 8 C 1.40209 * 120.62554 * 179.70414 * 7 6 5 9 9 H 1.08000 * 120.00058 * 212.94739 * 8 7 6 10 10 C 1.40430 * 120.00196 * 32.94417 * 8 7 6 11 11 N 1.30558 * 119.99874 * 9.62053 * 10 8 7 12 12 Si 1.86801 * 120.00253 * 189.61768 * 10 8 7 13 13 H 1.48494 * 109.46971 * 60.00087 * 12 10 8 14 14 H 1.48507 * 109.47114 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47141 * 299.99666 * 12 10 8 16 16 C 1.46515 * 118.74771 * 359.47270 * 7 6 5 17 17 C 1.46158 * 120.50039 * 180.28326 * 16 7 6 18 18 O 1.21405 * 120.00110 * 356.72211 * 17 16 7 19 19 C 1.40210 * 112.23076 * 0.02562 * 4 3 2 20 20 S 1.75482 * 124.59213 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47035 * 90.00033 * 1 2 3 22 22 H 1.09004 * 109.47113 * 209.99771 * 1 2 3 23 23 H 1.09000 * 109.47286 * 329.99726 * 1 2 3 24 24 H 1.07999 * 122.02469 * 0.02562 * 3 2 1 25 25 H 1.08001 * 118.99315 * 359.97438 * 5 4 3 26 26 H 1.08007 * 119.68760 * 180.02562 * 6 5 4 27 27 H 0.97005 * 120.00538 * 180.02562 * 11 10 8 28 28 H 1.07995 * 120.00089 * 176.72054 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2591 1.0904 0.0000 4 6 3.6491 0.8789 0.0006 5 6 4.6855 1.8486 0.0012 6 6 5.9914 1.5015 0.0022 7 6 6.3746 0.1423 -0.0035 8 6 7.7296 -0.2179 -0.0087 9 1 8.0484 -1.1134 -0.5214 10 6 8.6723 0.5858 0.6526 11 7 8.2726 1.5586 1.4263 12 14 10.4982 0.2631 0.4256 13 1 10.8509 0.4039 -1.0100 14 1 11.2772 1.2422 1.2256 15 1 10.8179 -1.1135 0.8813 16 6 5.3294 -0.8845 0.0012 17 6 5.6827 -2.3027 0.0018 18 8 6.8478 -2.6381 -0.0618 19 6 3.9783 -0.4840 0.0005 20 16 2.5033 -1.4446 0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.8305 2.0817 0.0004 25 1 4.4224 2.8960 0.0009 26 1 6.7494 2.2710 0.0031 27 1 8.9237 2.1141 1.8829 28 1 4.9074 -3.0524 0.0588 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396349454.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:26 Heat of formation + Delta-G solvation = -24.355771 kcal Electronic energy + Delta-G solvation = -14797.612657 eV Core-core repulsion = 12289.670574 eV Total energy + Delta-G solvation = -2507.942083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21706 -38.90263 -36.92542 -35.09924 -31.95147 -31.85811 -29.20958 -26.01987 -25.19609 -23.65534 -21.30796 -20.85720 -19.55793 -17.73141 -17.45503 -16.76952 -16.32923 -15.42540 -15.21984 -15.06790 -14.91777 -14.49355 -14.21091 -13.93744 -13.39943 -13.29017 -13.10816 -12.91191 -12.68408 -12.40518 -12.01124 -11.87703 -11.53945 -11.45227 -11.04066 -10.23784 -10.02283 -9.06626 -8.99674 -8.45018 -6.59924 0.08943 0.29594 0.84476 1.27646 1.29533 1.32614 1.45067 1.66673 2.10170 2.10680 2.58747 3.46315 3.75926 4.07051 4.31859 4.56895 4.59128 4.79454 4.86927 4.90052 4.93444 5.03488 5.08309 5.24068 5.34922 5.42687 5.75628 5.87047 5.91745 6.03072 6.38348 6.54614 6.72079 7.07630 7.95445 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.038147 B = 0.007181 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.825141 B = 3898.330523 C = 4546.226812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.220 4.220 3 C -0.097 4.097 4 C -0.212 4.212 5 C -0.057 4.057 6 C -0.155 4.155 7 C 0.126 3.874 8 C -0.411 4.411 9 H 0.099 0.901 10 C 0.031 3.969 11 N -0.780 5.780 12 Si 0.992 3.008 13 H -0.252 1.252 14 H -0.251 1.251 15 H -0.267 1.267 16 C -0.341 4.341 17 C 0.367 3.633 18 O -0.527 6.527 19 C -0.052 4.052 20 S 0.047 5.953 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.150 0.850 25 H 0.126 0.874 26 H 0.118 0.882 27 H 0.305 0.695 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 1.601 -1.096 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.335 4.335 3 C -0.125 4.125 4 C -0.218 4.218 5 C -0.077 4.077 6 C -0.175 4.175 7 C 0.120 3.880 8 C -0.436 4.436 9 H 0.117 0.883 10 C -0.190 4.190 11 N -0.403 5.403 12 Si 0.811 3.189 13 H -0.176 1.176 14 H -0.175 1.175 15 H -0.192 1.192 16 C -0.350 4.350 17 C 0.237 3.763 18 O -0.411 6.411 19 C -0.167 4.167 20 S 0.309 5.691 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.168 0.832 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.117 0.883 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.493 0.134 -0.951 7.555 hybrid contribution 1.112 1.422 0.101 1.808 sum -6.382 1.557 -0.849 6.623 Atomic orbital electron populations 1.20300 0.85492 1.03620 1.03165 1.24073 1.00793 0.94101 1.14547 1.19883 0.90866 0.99828 1.01941 1.18208 0.94208 0.92112 1.17304 1.20649 0.91720 0.98132 0.97224 1.20948 0.95554 0.96037 1.04912 1.18959 0.92436 0.91214 0.85432 1.20527 0.92062 1.07363 1.23694 0.88345 1.27197 1.07204 0.92354 0.92280 1.69662 1.40427 1.12969 1.17229 0.85089 0.73813 0.79548 0.80473 1.17557 1.17452 1.19157 1.20846 0.90484 0.95406 1.28286 1.23255 0.90441 0.90283 0.72319 1.90368 1.24269 1.84561 1.41914 1.22857 0.96064 0.96846 1.00979 1.83414 0.95195 1.10251 1.80235 0.90232 0.91011 0.89494 0.83211 0.85636 0.86417 0.88342 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.34 71.24 0.74 -0.72 15 2 C -0.22 -7.05 6.42 24.56 0.16 -6.89 15 3 C -0.10 -3.40 9.96 21.72 0.22 -3.18 15 4 C -0.21 -9.20 5.88 -21.31 -0.13 -9.33 15 5 C -0.06 -2.51 9.91 22.47 0.22 -2.29 15 6 C -0.16 -7.70 8.52 22.29 0.19 -7.51 15 7 C 0.13 6.81 5.66 -19.91 -0.11 6.70 15 8 C -0.41 -22.15 7.92 23.28 0.18 -21.97 15 9 H 0.10 5.54 5.78 -2.91 -0.02 5.52 15 10 C 0.03 1.49 5.26 85.42 0.45 1.93 15 11 N -0.78 -37.35 11.08 21.91 0.24 -37.10 15 12 Si 0.99 36.81 29.57 68.60 2.03 38.84 15 13 H -0.25 -9.03 7.11 99.48 0.71 -8.33 15 14 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 15 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 16 C -0.34 -17.48 6.08 -18.41 -0.11 -17.59 15 17 C 0.37 17.90 11.27 69.88 0.79 18.69 15 18 O -0.53 -28.55 14.50 -3.42 -0.05 -28.60 15 19 C -0.05 -2.36 6.37 23.41 0.15 -2.21 15 20 S 0.05 1.71 22.74 -56.49 -1.28 0.42 15 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.15 4.32 8.06 -2.91 -0.02 4.30 15 25 H 0.13 4.65 8.06 -2.91 -0.02 4.63 15 26 H 0.12 5.81 6.51 -2.91 -0.02 5.80 15 27 H 0.30 12.80 8.29 -92.70 -0.77 12.03 15 28 H 0.09 3.68 7.72 -2.91 -0.02 3.66 15 Total: -1.00 -60.81 261.64 4.87 -55.94 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 1.19 Total: 14.87 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 2.74 Total: -44.37 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.24 Total: -37.10 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.28 Total: 0.42 kcal Total: -60.81 4.87 -55.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396349454.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.586 kcal (2) G-P(sol) polarization free energy of solvation -60.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds