Wall clock time and date at job start Mon Mar 30 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39366 * 119.95299 * 2 1 4 4 S 1.75801 * 130.10063 * 0.02664 * 3 2 1 5 5 C 1.69975 * 93.22187 * 179.97438 * 4 3 2 6 6 C 1.36597 * 111.96738 * 359.97438 * 5 4 3 7 7 C 1.40869 * 123.27433 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00115 * 159.21001 * 7 6 5 9 9 C 1.39734 * 119.99703 * 339.20589 * 7 6 5 10 10 N 1.31052 * 120.00306 * 344.92156 * 9 7 6 11 11 Si 1.86806 * 120.00140 * 164.91890 * 9 7 6 12 12 H 1.48504 * 109.46901 * 89.99834 * 11 9 7 13 13 H 1.48495 * 109.47305 * 210.00190 * 11 9 7 14 14 H 1.48500 * 109.46802 * 330.00601 * 11 9 7 15 15 C 1.39641 * 119.71050 * 179.97438 * 3 2 1 16 16 C 1.40893 * 119.48966 * 0.02562 * 15 3 2 17 17 C 1.35934 * 120.68607 * 359.97096 * 16 15 3 18 18 C 1.39409 * 119.95724 * 179.97438 * 2 1 3 19 19 C 1.46905 * 120.09529 * 0.02562 * 18 2 1 20 20 O 1.21299 * 119.99847 * 179.97438 * 19 18 2 21 21 H 1.08993 * 109.47271 * 90.00301 * 1 2 3 22 22 H 1.09001 * 109.46741 * 209.99881 * 1 2 3 23 23 H 1.09001 * 109.47591 * 329.99709 * 1 2 3 24 24 H 1.08003 * 124.01311 * 179.97438 * 5 4 3 25 25 H 0.97000 * 120.00413 * 179.97438 * 10 9 7 26 26 H 1.07996 * 119.65486 * 180.02562 * 16 15 3 27 27 H 1.07994 * 119.88664 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.00049 * 359.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2028 1.2075 0.0000 4 16 1.6030 2.8601 0.0006 5 6 3.1657 3.5288 0.0009 6 6 4.1339 2.5652 0.0011 7 6 5.5125 2.8548 0.0009 8 1 6.2207 2.1102 0.3330 9 6 5.9636 4.1054 -0.4293 10 7 5.1626 4.8953 -1.1014 11 14 7.7085 4.6514 -0.0461 12 1 8.6131 4.2242 -1.1436 13 1 7.7478 6.1304 0.0804 14 1 8.1517 4.0334 1.2294 15 6 3.5992 1.2016 0.0005 16 6 4.2875 -0.0277 0.0005 17 6 3.6065 -1.2041 0.0006 18 6 2.2031 -1.2078 0.0005 19 6 1.4697 -2.4807 0.0005 20 8 2.0772 -3.5307 0.0005 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 3.3689 4.5896 0.0009 25 1 5.4756 5.7637 -1.3997 26 1 5.3675 -0.0354 0.0014 27 1 4.1472 -2.1389 0.0010 28 1 0.3898 -2.4817 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396350039.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:56 Heat of formation + Delta-G solvation = -26.714552 kcal Electronic energy + Delta-G solvation = -14698.499874 eV Core-core repulsion = 12190.455506 eV Total energy + Delta-G solvation = -2508.044368 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89017 -39.33344 -36.88422 -34.43284 -33.47706 -30.47479 -28.61712 -27.26424 -25.63881 -22.91722 -22.38309 -20.92994 -18.50768 -18.35231 -17.66087 -16.89283 -16.15562 -15.84054 -15.51173 -15.44038 -14.64823 -14.50221 -14.28656 -13.72359 -13.56899 -13.28856 -13.12858 -12.97097 -12.74618 -12.43173 -12.17147 -11.78910 -11.69446 -11.22228 -11.05759 -10.64912 -10.08699 -9.21198 -8.67780 -8.48309 -6.29715 -0.44655 0.40551 1.09036 1.14414 1.35530 1.40822 1.49725 1.87752 2.02698 2.20379 2.78650 3.32461 3.42066 3.84545 4.02139 4.10055 4.33945 4.53125 4.73424 4.76752 4.85029 4.93675 5.17806 5.27912 5.30323 5.32512 5.51796 5.63622 5.91612 5.99273 6.45830 6.52735 6.78476 6.89331 8.35542 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031536 B = 0.007113 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.670769 B = 3935.283619 C = 4755.662733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.009 3.991 3 C -0.180 4.180 4 S 0.091 5.909 5 C -0.381 4.381 6 C 0.046 3.954 7 C -0.470 4.470 8 H 0.075 0.925 9 C 0.028 3.972 10 N -0.829 5.829 11 Si 0.983 3.017 12 H -0.263 1.263 13 H -0.268 1.268 14 H -0.259 1.259 15 C -0.064 4.064 16 C -0.112 4.112 17 C -0.082 4.082 18 C -0.210 4.210 19 C 0.401 3.599 20 O -0.504 6.504 21 H 0.098 0.902 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.137 0.863 25 H 0.285 0.715 26 H 0.120 0.880 27 H 0.138 0.862 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.443 -6.628 1.645 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.004 3.996 3 C -0.295 4.295 4 S 0.355 5.645 5 C -0.517 4.517 6 C 0.037 3.963 7 C -0.503 4.503 8 H 0.093 0.907 9 C -0.185 4.185 10 N -0.456 5.456 11 Si 0.804 3.196 12 H -0.188 1.188 13 H -0.193 1.193 14 H -0.183 1.183 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.104 4.104 18 C -0.213 4.213 19 C 0.263 3.737 20 O -0.380 6.380 21 H 0.116 0.884 22 H 0.128 0.872 23 H 0.089 0.911 24 H 0.154 0.846 25 H 0.095 0.905 26 H 0.138 0.862 27 H 0.155 0.845 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.536 -6.176 1.523 10.646 hybrid contribution 2.783 0.537 -0.055 2.835 sum -5.753 -5.639 1.468 8.189 Atomic orbital electron populations 1.21114 0.87390 1.04980 1.04682 1.19931 0.97559 0.88701 0.93448 1.22874 0.96620 0.98884 1.11168 1.81285 1.08646 0.93789 1.80828 1.24408 0.95069 1.02684 1.29584 1.17819 0.94949 0.88253 0.95282 1.19275 0.91876 0.99828 1.39329 0.90660 1.26671 1.04001 0.95827 0.92028 1.69932 1.39142 1.09687 1.26887 0.85176 0.76578 0.78036 0.79779 1.18752 1.19270 1.18302 1.20126 0.93175 0.94722 0.99435 1.20619 1.00022 0.90649 1.01874 1.20892 0.94146 0.97410 0.97921 1.20757 0.94431 0.95733 1.10414 1.24498 0.96541 0.84613 0.68002 1.90495 1.74637 1.35375 1.37476 0.88379 0.87214 0.91051 0.84551 0.90507 0.86245 0.84467 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.37 71.23 0.67 -1.91 15 2 C 0.01 0.29 5.95 -19.31 -0.11 0.17 15 3 C -0.18 -7.51 6.26 22.88 0.14 -7.37 15 4 S 0.09 3.83 22.22 -56.49 -1.26 2.58 15 5 C -0.38 -20.26 9.52 67.44 0.64 -19.62 15 6 C 0.05 2.50 5.69 -20.87 -0.12 2.38 15 7 C -0.47 -25.67 9.05 23.28 0.21 -25.46 15 8 H 0.08 3.93 7.63 -2.92 -0.02 3.91 15 9 C 0.03 1.45 5.31 85.17 0.45 1.90 15 10 N -0.83 -44.52 10.89 21.80 0.24 -44.28 15 11 Si 0.98 39.16 29.59 68.60 2.03 41.19 15 12 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 13 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 C -0.06 -3.04 6.03 -20.14 -0.12 -3.16 15 16 C -0.11 -4.70 9.78 22.38 0.22 -4.48 15 17 C -0.08 -2.92 9.52 22.25 0.21 -2.71 15 18 C -0.21 -6.51 5.86 -20.21 -0.12 -6.63 15 19 C 0.40 9.63 10.86 70.09 0.76 10.39 15 20 O -0.50 -15.59 17.16 -3.09 -0.05 -15.64 15 21 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.11 1.40 6.29 -2.39 -0.02 1.38 15 23 H 0.07 1.54 7.57 -2.39 -0.02 1.53 15 24 H 0.14 7.80 6.31 -2.91 -0.02 7.78 15 25 H 0.28 13.87 8.30 -92.71 -0.77 13.10 15 26 H 0.12 4.88 7.80 -2.91 -0.02 4.86 15 27 H 0.14 4.45 7.64 -2.91 -0.02 4.42 15 28 H 0.16 2.03 6.32 -2.91 -0.02 2.01 15 Total: -1.00 -65.21 260.39 4.99 -60.23 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.19 Total: 12.43 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 2.83 Total: -56.50 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.24 Total: -44.28 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.05 Total: -15.64 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.26 Total: 2.58 kcal Total: -65.21 4.99 -60.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350039.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.513 kcal (2) G-P(sol) polarization free energy of solvation -65.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds