Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39173 * 119.92393 * 2 1 4 4 S 1.76012 * 130.09869 * 0.02562 * 3 2 1 5 5 C 1.75463 * 91.75701 * 180.02562 * 4 3 2 6 6 C 1.39760 * 124.84045 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99458 * 179.97438 * 6 5 4 8 8 C 1.40414 * 120.00063 * 359.97438 * 6 5 4 9 9 N 1.30604 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00033 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47439 * 89.99680 * 10 8 6 12 12 H 1.48501 * 109.47294 * 210.00212 * 10 8 6 13 13 H 1.48502 * 109.46816 * 329.99861 * 10 8 6 14 14 C 1.37210 * 110.31533 * 359.97438 * 5 4 3 15 15 C 1.39412 * 115.09454 * 0.02562 * 14 5 4 16 16 C 1.42273 * 128.27679 * 179.97438 * 15 14 5 17 17 C 1.35356 * 120.74378 * 179.97438 * 16 15 14 18 18 C 1.39482 * 119.92517 * 180.31953 * 2 1 3 19 19 C 1.46782 * 120.07993 * 359.95207 * 18 2 1 20 20 O 1.21328 * 120.00091 * 180.30484 * 19 18 2 21 21 H 1.08994 * 109.46980 * 89.99954 * 1 2 3 22 22 H 1.09000 * 109.46867 * 210.00234 * 1 2 3 23 23 H 1.09002 * 109.47217 * 329.99806 * 1 2 3 24 24 H 0.96999 * 120.00042 * 179.97438 * 9 8 6 25 25 H 1.08000 * 122.44992 * 180.02562 * 14 5 4 26 26 H 1.08005 * 119.62937 * 0.02643 * 16 15 14 27 27 H 1.08002 * 119.76268 * 180.02562 * 17 16 15 28 28 H 1.08000 * 120.00098 * 0.29706 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2012 1.2062 0.0000 4 16 1.5999 2.8604 0.0006 5 6 3.2298 3.5102 -0.0007 6 6 3.5467 4.8714 -0.0013 7 1 4.5801 5.1851 -0.0017 8 6 2.5216 5.8309 -0.0016 9 7 1.2719 5.4514 -0.0016 10 14 2.9452 7.6502 -0.0017 11 1 3.0576 8.1322 -1.4018 12 1 1.8765 8.4074 0.6981 13 1 4.2382 7.8574 0.6985 14 6 4.1488 2.4913 -0.0009 15 6 3.6073 1.2066 -0.0007 16 6 4.2942 -0.0393 -0.0013 17 6 3.6095 -1.2069 -0.0005 18 6 2.2028 -1.2088 -0.0067 19 6 1.4690 -2.4801 -0.0128 20 8 2.0757 -3.5308 -0.0130 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 0.5637 6.1142 -0.0014 25 1 5.2137 2.6714 -0.0012 26 1 5.3741 -0.0537 -0.0017 27 1 4.1470 -2.1437 -0.0006 28 1 0.3890 -2.4802 -0.0168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396350915.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = -29.861313 kcal Electronic energy + Delta-G solvation = -14583.229576 eV Core-core repulsion = 12075.048755 eV Total energy + Delta-G solvation = -2508.180821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.98562 -37.46845 -35.26353 -33.53007 -31.83117 -29.38849 -26.60520 -26.00495 -23.45007 -21.26951 -20.60468 -18.82684 -17.98572 -16.38267 -15.93736 -15.25877 -14.44326 -14.24205 -13.82751 -13.76755 -12.92554 -12.84077 -12.50879 -12.34326 -12.14844 -12.12505 -11.60040 -11.55138 -11.22297 -10.83819 -10.54635 -10.42623 -10.01281 -9.48881 -9.20070 -8.99971 -8.43209 -7.56046 -7.42400 -6.52516 -4.91118 1.37581 2.38635 2.52115 2.71422 2.78038 2.95441 3.11070 3.40779 3.62046 3.67089 4.47593 4.93945 4.98073 5.47889 5.62878 5.88241 6.00704 6.04344 6.23701 6.29462 6.40988 6.60037 6.70593 6.96658 7.04686 7.14462 7.30849 7.40106 7.58319 7.67519 7.91384 8.09790 8.15345 8.18055 9.38243 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.051195 B = 0.006164 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.796498 B = 4541.110078 C = 5072.753357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.045 3.955 3 C -0.290 4.290 4 S 0.144 5.856 5 C 0.055 3.945 6 C -0.363 4.363 7 H 0.104 0.896 8 C 0.050 3.950 9 N -0.760 5.760 10 Si 0.942 3.058 11 H -0.261 1.261 12 H -0.269 1.269 13 H -0.254 1.254 14 C -0.361 4.361 15 C 0.052 3.948 16 C -0.179 4.179 17 C -0.043 4.043 18 C -0.290 4.290 19 C 0.385 3.615 20 O -0.503 6.503 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.306 0.694 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 1.307 -0.028 3.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 C -0.404 4.404 4 S 0.404 5.596 5 C -0.065 4.065 6 C -0.397 4.397 7 H 0.122 0.878 8 C -0.174 4.174 9 N -0.385 5.385 10 Si 0.764 3.236 11 H -0.185 1.185 12 H -0.193 1.193 13 H -0.178 1.178 14 C -0.385 4.385 15 C 0.044 3.956 16 C -0.199 4.199 17 C -0.064 4.064 18 C -0.294 4.294 19 C 0.250 3.750 20 O -0.382 6.382 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.242 1.490 -0.022 4.496 hybrid contribution 1.635 0.294 -0.008 1.662 sum -2.607 1.784 -0.030 3.159 Atomic orbital electron populations 1.20937 0.92365 1.02519 1.02328 1.19269 0.93979 0.90636 0.92075 1.23418 0.97378 1.00539 1.19017 1.84718 1.06629 0.89495 1.78763 1.21606 0.94886 0.96422 0.93568 1.19544 0.95706 0.88980 1.35426 0.87843 1.26462 0.94078 1.04506 0.92315 1.68587 1.01010 1.38730 1.30132 0.85692 0.80122 0.77774 0.80043 1.18515 1.19305 1.17756 1.19708 0.98298 0.89906 1.30566 1.18177 0.91767 0.93384 0.92313 1.20428 0.98306 0.91284 1.09842 1.20356 0.93012 0.97111 0.95899 1.19814 0.94447 0.93597 1.21503 1.23662 0.94078 0.87200 0.70030 1.90429 1.73634 1.34944 1.39202 0.90913 0.91621 0.91204 0.88059 0.87239 0.87758 0.87156 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.35 36.00 0.34 -1.65 15 2 C 0.05 0.92 5.95 -103.81 -0.62 0.30 15 3 C -0.29 -6.68 6.29 -38.34 -0.24 -6.92 15 4 S 0.14 3.32 19.39 -107.50 -2.08 1.23 15 5 C 0.06 1.36 6.12 -39.39 -0.24 1.12 15 6 C -0.36 -8.34 9.27 -38.19 -0.35 -8.69 15 7 H 0.10 2.22 7.85 -52.49 -0.41 1.81 15 8 C 0.05 1.05 5.50 -17.26 -0.09 0.96 15 9 N -0.76 -16.29 10.58 55.57 0.59 -15.70 15 10 Si 0.94 15.47 29.56 -169.99 -5.03 10.44 15 11 H -0.26 -4.25 7.11 56.52 0.40 -3.85 15 12 H -0.27 -4.29 7.11 56.52 0.40 -3.89 15 13 H -0.25 -4.15 7.11 56.52 0.40 -3.75 15 14 C -0.36 -8.81 10.13 -39.52 -0.40 -9.21 15 15 C 0.05 1.24 5.85 -107.02 -0.63 0.62 15 16 C -0.18 -3.92 10.01 -39.06 -0.39 -4.31 15 17 C -0.04 -0.91 9.49 -39.69 -0.38 -1.29 15 18 C -0.29 -5.88 5.87 -105.06 -0.62 -6.50 15 19 C 0.39 6.91 10.86 34.18 0.37 7.28 15 20 O -0.50 -10.38 17.15 5.52 0.09 -10.28 15 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.06 0.87 6.31 -51.93 -0.33 0.54 15 23 H 0.07 1.12 7.56 -51.93 -0.39 0.73 15 24 H 0.31 5.78 8.29 -40.82 -0.34 5.45 15 25 H 0.11 2.54 8.06 -52.49 -0.42 2.12 15 26 H 0.10 2.07 8.06 -52.48 -0.42 1.64 15 27 H 0.11 2.18 7.63 -52.49 -0.40 1.78 15 28 H 0.08 1.15 6.33 -52.49 -0.33 0.82 15 LS Contribution 260.92 15.07 3.93 3.93 Total: -1.00 -26.63 260.92 -8.01 -34.65 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -2.27 Total: 4.03 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.25 Total: -28.30 kcal Atomic # 7 Polarization: -16.29 SS G_CDS: 0.59 Total: -15.70 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 15.47 SS G_CDS: -5.03 Total: 10.44 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.08 Total: 1.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.63 -8.01 -34.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350915.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -26.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds