Wall clock time and date at job start Mon Mar 30 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39173 * 119.92393 * 2 1 4 4 S 1.76012 * 130.09869 * 0.02562 * 3 2 1 5 5 C 1.75463 * 91.75701 * 180.02562 * 4 3 2 6 6 C 1.39760 * 124.84045 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99458 * 179.97438 * 6 5 4 8 8 C 1.40414 * 120.00063 * 359.97438 * 6 5 4 9 9 N 1.30604 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00033 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47439 * 89.99680 * 10 8 6 12 12 H 1.48501 * 109.47294 * 210.00212 * 10 8 6 13 13 H 1.48502 * 109.46816 * 329.99861 * 10 8 6 14 14 C 1.37210 * 110.31533 * 359.97438 * 5 4 3 15 15 C 1.39412 * 115.09454 * 0.02562 * 14 5 4 16 16 C 1.42273 * 128.27679 * 179.97438 * 15 14 5 17 17 C 1.35356 * 120.74378 * 179.97438 * 16 15 14 18 18 C 1.39482 * 119.92517 * 180.31953 * 2 1 3 19 19 C 1.46782 * 120.07993 * 359.95207 * 18 2 1 20 20 O 1.21328 * 120.00091 * 180.30484 * 19 18 2 21 21 H 1.08994 * 109.46980 * 89.99954 * 1 2 3 22 22 H 1.09000 * 109.46867 * 210.00234 * 1 2 3 23 23 H 1.09002 * 109.47217 * 329.99806 * 1 2 3 24 24 H 0.96999 * 120.00042 * 179.97438 * 9 8 6 25 25 H 1.08000 * 122.44992 * 180.02562 * 14 5 4 26 26 H 1.08005 * 119.62937 * 0.02643 * 16 15 14 27 27 H 1.08002 * 119.76268 * 180.02562 * 17 16 15 28 28 H 1.08000 * 120.00098 * 0.29706 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2012 1.2062 0.0000 4 16 1.5999 2.8604 0.0006 5 6 3.2298 3.5102 -0.0007 6 6 3.5467 4.8714 -0.0013 7 1 4.5801 5.1851 -0.0017 8 6 2.5216 5.8309 -0.0016 9 7 1.2719 5.4514 -0.0016 10 14 2.9452 7.6502 -0.0017 11 1 3.0576 8.1322 -1.4018 12 1 1.8765 8.4074 0.6981 13 1 4.2382 7.8574 0.6985 14 6 4.1488 2.4913 -0.0009 15 6 3.6073 1.2066 -0.0007 16 6 4.2942 -0.0393 -0.0013 17 6 3.6095 -1.2069 -0.0005 18 6 2.2028 -1.2088 -0.0067 19 6 1.4690 -2.4801 -0.0128 20 8 2.0757 -3.5308 -0.0130 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 0.5637 6.1142 -0.0014 25 1 5.2137 2.6714 -0.0012 26 1 5.3741 -0.0537 -0.0017 27 1 4.1470 -2.1437 -0.0006 28 1 0.3890 -2.4802 -0.0168 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396350915.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:58 Heat of formation + Delta-G solvation = -42.901360 kcal Electronic energy + Delta-G solvation = -14583.795035 eV Core-core repulsion = 12075.048755 eV Total energy + Delta-G solvation = -2508.746280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57910 -39.07789 -36.92778 -35.16549 -33.40171 -31.08108 -28.16523 -27.56608 -25.08517 -22.87331 -22.23993 -20.50124 -19.68039 -17.95178 -17.52281 -16.77740 -16.05942 -15.91389 -15.34005 -15.28082 -14.41887 -14.36586 -14.09348 -14.00327 -13.64504 -13.60928 -13.10215 -13.03347 -12.77980 -12.36509 -11.99441 -11.95669 -11.71340 -11.10799 -10.95868 -10.49507 -10.10315 -9.29628 -9.02812 -8.26811 -6.67151 -0.22598 0.69845 1.00900 1.34515 1.38173 1.53026 1.55739 1.84248 2.02994 2.10397 2.81049 3.22389 3.61561 4.00099 4.18301 4.34158 4.56497 4.64824 4.79185 4.83001 4.92253 4.96024 5.15942 5.25718 5.38437 5.45282 5.65581 5.71680 5.84968 5.98017 6.21428 6.37414 6.43960 6.70468 7.82432 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.051195 B = 0.006164 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.796498 B = 4541.110078 C = 5072.753357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.046 3.954 3 C -0.315 4.315 4 S 0.147 5.853 5 C 0.024 3.976 6 C -0.387 4.387 7 H 0.107 0.893 8 C 0.018 3.982 9 N -0.779 5.779 10 Si 1.014 2.986 11 H -0.255 1.255 12 H -0.256 1.256 13 H -0.254 1.254 14 C -0.395 4.395 15 C 0.027 3.973 16 C -0.195 4.195 17 C -0.050 4.050 18 C -0.298 4.298 19 C 0.398 3.602 20 O -0.527 6.527 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.065 0.935 24 H 0.319 0.681 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 1.331 -0.044 4.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.041 3.959 3 C -0.429 4.429 4 S 0.406 5.594 5 C -0.096 4.096 6 C -0.420 4.420 7 H 0.125 0.875 8 C -0.204 4.204 9 N -0.404 5.404 10 Si 0.832 3.168 11 H -0.179 1.179 12 H -0.179 1.179 13 H -0.177 1.177 14 C -0.419 4.419 15 C 0.019 3.981 16 C -0.214 4.214 17 C -0.071 4.071 18 C -0.301 4.301 19 C 0.264 3.736 20 O -0.407 6.407 21 H 0.111 0.889 22 H 0.119 0.881 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.042 1.483 -0.038 6.221 hybrid contribution 2.153 0.170 -0.005 2.159 sum -3.889 1.653 -0.043 4.226 Atomic orbital electron populations 1.21054 0.88891 1.04089 1.04017 1.19745 0.96516 0.89472 0.90163 1.23721 0.97346 1.01543 1.20291 1.84360 1.05955 0.89786 1.79259 1.21957 0.95789 0.97312 0.94507 1.19904 0.96796 0.89199 1.36143 0.87498 1.27385 0.93465 1.08482 0.91075 1.68573 1.01948 1.40685 1.29178 0.84657 0.80043 0.71886 0.80236 1.17935 1.17939 1.17731 1.19805 0.98205 0.90732 1.33125 1.18445 0.92831 0.93756 0.93079 1.20599 0.99044 0.91175 1.10619 1.20623 0.94060 0.97048 0.95326 1.20303 0.94379 0.95124 1.20286 1.24179 0.95964 0.85259 0.68197 1.90440 1.74666 1.35555 1.40036 0.88941 0.88078 0.91633 0.86689 0.87853 0.86850 0.86121 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.53 9.35 71.24 0.67 -2.86 15 2 C 0.05 1.78 5.95 -19.34 -0.12 1.67 15 3 C -0.32 -14.69 6.29 23.07 0.15 -14.54 15 4 S 0.15 6.88 19.39 -56.49 -1.10 5.78 15 5 C 0.02 1.24 6.12 22.40 0.14 1.38 15 6 C -0.39 -18.28 9.27 23.17 0.21 -18.06 15 7 H 0.11 4.76 7.85 -2.91 -0.02 4.74 15 8 C 0.02 0.74 5.50 85.41 0.47 1.21 15 9 N -0.78 -33.12 10.58 21.91 0.23 -32.89 15 10 Si 1.01 30.62 29.56 68.60 2.03 32.65 15 11 H -0.26 -7.47 7.11 99.48 0.71 -6.76 15 12 H -0.26 -7.16 7.11 99.48 0.71 -6.45 15 13 H -0.25 -7.60 7.11 99.48 0.71 -6.89 15 14 C -0.39 -20.36 10.13 22.31 0.23 -20.14 15 15 C 0.03 1.33 5.85 -21.42 -0.13 1.21 15 16 C -0.19 -8.74 10.01 22.61 0.23 -8.51 15 17 C -0.05 -2.09 9.49 22.20 0.21 -1.88 15 18 C -0.30 -11.46 5.87 -20.15 -0.12 -11.58 15 19 C 0.40 12.77 10.86 70.06 0.76 13.53 15 20 O -0.53 -20.20 17.15 -3.18 -0.05 -20.25 15 21 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 22 H 0.10 2.13 6.31 -2.39 -0.02 2.11 15 23 H 0.06 1.95 7.56 -2.39 -0.02 1.93 15 24 H 0.32 11.71 8.29 -92.71 -0.77 10.94 15 25 H 0.10 5.18 8.06 -2.91 -0.02 5.15 15 26 H 0.11 4.67 8.06 -2.91 -0.02 4.65 15 27 H 0.12 4.68 7.63 -2.91 -0.02 4.66 15 28 H 0.14 3.02 6.33 -2.91 -0.02 3.00 15 Total: -1.00 -58.92 260.92 5.00 -53.93 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.19 Total: 19.37 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 2.70 Total: -58.59 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.23 Total: -32.89 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 30.62 SS G_CDS: 2.03 Total: 32.65 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -1.10 Total: 5.78 kcal Total: -58.92 5.00 -53.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396350915.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.025 kcal (2) G-P(sol) polarization free energy of solvation -58.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds