Wall clock time and date at job start Mon Mar 30 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31630 * 124.24794 * 2 1 4 4 C 1.45680 * 114.91469 * 179.97438 * 3 2 1 5 5 C 1.40442 * 129.04475 * 180.02562 * 4 3 2 6 6 C 1.40038 * 120.54035 * 179.97438 * 5 4 3 7 7 C 1.41380 * 119.93595 * 180.27163 * 6 5 4 8 8 H 1.07998 * 120.00153 * 154.16346 * 7 6 5 9 9 C 1.39841 * 120.00014 * 334.16107 * 7 6 5 10 10 N 1.30900 * 120.00008 * 342.49745 * 9 7 6 11 11 Si 1.86801 * 119.99933 * 162.49557 * 9 7 6 12 12 H 1.48497 * 109.47352 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47242 * 120.00334 * 11 9 7 14 14 H 1.48510 * 109.47116 * 240.00102 * 11 9 7 15 15 C 1.40698 * 120.12293 * 359.97438 * 6 5 4 16 16 C 1.38637 * 119.75632 * 0.02562 * 15 6 5 17 17 C 1.46828 * 119.86588 * 180.02562 * 16 15 6 18 18 O 1.21304 * 120.00259 * 359.97438 * 17 16 15 19 19 C 1.40047 * 111.71423 * 359.97438 * 4 3 2 20 20 S 1.75258 * 124.24638 * 179.97438 * 2 1 3 21 21 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47129 * 300.02373 * 1 2 3 23 23 H 1.09000 * 109.47089 * 60.02069 * 1 2 3 24 24 H 1.08003 * 122.54010 * 359.95459 * 3 2 1 25 25 H 1.07992 * 119.73223 * 359.97438 * 5 4 3 26 26 H 0.97001 * 119.99675 * 180.02562 * 10 9 7 27 27 H 1.08003 * 120.11757 * 179.97438 * 15 6 5 28 28 H 1.07999 * 119.99986 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2477 1.0881 0.0000 4 6 3.6853 0.8518 0.0006 5 6 4.7351 1.7846 0.0012 6 6 6.0682 1.3557 0.0023 7 6 7.1151 2.3058 0.0087 8 1 8.0798 2.0436 0.4173 9 6 6.9015 3.5852 -0.5140 10 7 5.8822 3.8073 -1.3048 11 14 8.0706 4.9771 -0.0837 12 1 9.1336 4.4692 0.8203 13 1 8.6889 5.5061 -1.3260 14 1 7.3189 6.0626 0.5961 15 6 6.3676 -0.0191 0.0032 16 6 5.3380 -0.9475 0.0026 17 6 5.6476 -2.3828 0.0042 18 8 6.8024 -2.7541 0.0056 19 6 3.9855 -0.5161 0.0016 20 16 2.4932 -1.4487 0.0006 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5142 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 1.8221 2.0807 -0.0007 25 1 4.5126 2.8414 0.0009 26 1 5.7343 4.6946 -1.6676 27 1 7.3957 -0.3498 0.0036 28 1 4.8473 -3.1079 0.0041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396351025.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:29 Heat of formation + Delta-G solvation = -24.994822 kcal Electronic energy + Delta-G solvation = -14630.796269 eV Core-core repulsion = 12122.826474 eV Total energy + Delta-G solvation = -2507.969794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54270 -39.26828 -36.88784 -35.23567 -32.14764 -31.78342 -28.12067 -27.12034 -25.54268 -23.30147 -21.70441 -20.90876 -19.16367 -18.13813 -17.34016 -16.71516 -16.42407 -15.80133 -15.59626 -15.39761 -14.94279 -14.68228 -14.19596 -13.91882 -13.57178 -13.23159 -13.05334 -12.89953 -12.78504 -12.31499 -12.08442 -11.77046 -11.63240 -11.50877 -10.96135 -10.72829 -10.16735 -9.20130 -8.72029 -8.53701 -6.40153 -0.19402 0.23144 0.83113 1.15700 1.22022 1.38051 1.52369 1.54688 1.87029 2.18101 2.61691 3.35584 3.50163 3.85269 4.18345 4.34305 4.50766 4.67797 4.77839 4.81633 4.82310 5.03428 5.14614 5.21878 5.26929 5.36612 5.43455 5.73612 5.90701 6.03150 6.41734 6.46570 6.75782 6.79134 8.25481 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.007972 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.151393 B = 3511.598046 C = 4670.068368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.154 4.154 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.133 4.133 6 C 0.065 3.935 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.038 3.962 10 N -0.822 5.822 11 Si 0.984 3.016 12 H -0.259 1.259 13 H -0.266 1.266 14 H -0.261 1.261 15 C -0.132 4.132 16 C -0.153 4.153 17 C 0.395 3.605 18 O -0.501 6.501 19 C -0.205 4.205 20 S 0.068 5.932 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.145 0.855 25 H 0.113 0.887 26 H 0.292 0.708 27 H 0.109 0.891 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 -3.081 1.853 10.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.269 4.269 3 C -0.173 4.173 4 C -0.081 4.081 5 C -0.155 4.155 6 C 0.061 3.939 7 C -0.523 4.523 8 H 0.097 0.903 9 C -0.178 4.178 10 N -0.448 5.448 11 Si 0.804 3.196 12 H -0.183 1.183 13 H -0.190 1.190 14 H -0.185 1.185 15 C -0.153 4.153 16 C -0.159 4.159 17 C 0.258 3.742 18 O -0.378 6.378 19 C -0.320 4.320 20 S 0.328 5.672 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.163 0.837 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.441 -4.620 1.702 10.648 hybrid contribution 1.133 2.401 -0.067 2.655 sum -8.308 -2.219 1.635 8.754 Atomic orbital electron populations 1.20489 0.84941 1.04104 1.04123 1.24166 1.01345 0.94984 1.06433 1.20935 0.90565 1.00098 1.05738 1.19478 0.93892 0.92529 1.02186 1.21283 0.91018 0.98153 1.05043 1.17678 0.93547 0.91780 0.90866 1.19817 0.98777 0.97042 1.36623 0.90298 1.26712 0.97576 1.01798 0.91677 1.69864 1.28348 1.24682 1.21920 0.85131 0.78397 0.76832 0.79238 1.18309 1.19029 1.18532 1.21544 0.97476 0.93007 1.03285 1.20031 0.91371 0.96121 1.08380 1.24266 0.91449 0.90069 0.68464 1.90449 1.26432 1.83307 1.37594 1.22470 0.96172 0.96530 1.16835 1.83023 0.93585 1.08281 1.82349 0.89980 0.89189 0.89411 0.83734 0.86909 0.89758 0.87337 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.32 71.23 0.73 -0.82 15 2 C -0.15 -4.70 6.37 25.05 0.16 -4.54 15 3 C -0.14 -5.28 10.21 23.56 0.24 -5.04 15 4 C -0.07 -3.41 6.02 -20.38 -0.12 -3.53 15 5 C -0.13 -6.87 8.73 23.24 0.20 -6.67 15 6 C 0.06 3.49 5.54 -21.47 -0.12 3.37 15 7 C -0.49 -26.28 9.03 23.43 0.21 -26.07 15 8 H 0.08 4.09 7.90 -2.91 -0.02 4.07 15 9 C 0.04 1.86 5.12 85.22 0.44 2.30 15 10 N -0.82 -41.82 11.00 21.81 0.24 -41.58 15 11 Si 0.98 37.38 29.59 68.60 2.03 39.41 15 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 13 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 14 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 15 C -0.13 -6.69 9.30 22.97 0.21 -6.47 15 16 C -0.15 -6.86 5.88 -20.01 -0.12 -6.98 15 17 C 0.40 15.06 11.29 70.07 0.79 15.85 15 18 O -0.50 -21.74 17.11 -3.10 -0.05 -21.80 15 19 C -0.21 -8.75 6.39 23.63 0.15 -8.60 15 20 S 0.07 2.16 22.61 -56.49 -1.28 0.88 15 21 H 0.08 1.36 8.13 -2.39 -0.02 1.34 15 22 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.15 4.80 8.06 -2.91 -0.02 4.77 15 25 H 0.11 6.02 6.16 -2.91 -0.02 6.01 15 26 H 0.29 13.28 8.30 -92.71 -0.77 12.51 15 27 H 0.11 5.48 7.60 -2.91 -0.02 5.46 15 28 H 0.13 3.79 7.68 -2.91 -0.02 3.76 15 Total: -1.00 -61.02 265.92 4.91 -56.11 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.18 Total: 14.18 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 2.78 Total: -47.20 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.24 Total: -41.58 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.28 Total: 0.88 kcal Total: -61.02 4.91 -56.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396351025.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.119 kcal (2) G-P(sol) polarization free energy of solvation -61.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds