Wall clock time and date at job start Mon Mar 30 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.31757 * 124.29559 * 2 1 4 4 C 1.45592 * 114.89332 * 179.97438 * 3 2 1 5 5 C 1.40908 * 129.00642 * 179.97438 * 4 3 2 6 6 C 1.39406 * 120.77605 * 180.02562 * 5 4 3 7 7 C 1.47011 * 119.82199 * 180.27925 * 6 5 4 8 8 O 1.21279 * 120.00330 * 359.72848 * 7 6 5 9 9 C 1.39707 * 120.35115 * 0.02562 * 6 5 4 10 10 C 1.39928 * 119.70491 * 359.97438 * 9 6 5 11 11 C 1.41030 * 119.99503 * 180.02562 * 10 9 6 12 12 H 1.07992 * 120.00285 * 205.09805 * 11 10 9 13 13 C 1.39908 * 119.99658 * 25.09834 * 11 10 9 14 14 N 1.30871 * 120.00283 * 17.94343 * 13 11 10 15 15 Si 1.86800 * 119.99853 * 197.94625 * 13 11 10 16 16 H 1.48503 * 109.47277 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47143 * 119.99803 * 15 13 11 18 18 H 1.48501 * 109.47333 * 239.99839 * 15 13 11 19 19 C 1.39643 * 111.79033 * 0.02562 * 4 3 2 20 20 S 1.75282 * 124.29601 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47298 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47217 * 299.99682 * 1 2 3 23 23 H 1.09004 * 109.46823 * 59.99673 * 1 2 3 24 24 H 1.07991 * 122.55749 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.61197 * 0.03492 * 5 4 3 26 26 H 1.08000 * 119.99806 * 179.72557 * 7 6 5 27 27 H 1.07993 * 120.14785 * 179.97438 * 9 6 5 28 28 H 0.97003 * 119.99924 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2494 1.0885 0.0000 4 6 3.6858 0.8507 0.0006 5 6 4.7396 1.7860 0.0003 6 6 6.0682 1.3637 0.0004 7 6 7.1513 2.3578 0.0063 8 8 6.8879 3.5416 0.0060 9 6 6.3758 0.0010 0.0004 10 6 5.3429 -0.9430 0.0007 11 6 5.6464 -2.3203 0.0012 12 1 4.9355 -3.0300 -0.3952 13 6 6.8685 -2.7670 0.5153 14 7 7.5712 -1.9906 1.3003 15 14 7.4972 -4.4716 0.0812 16 1 6.5240 -5.1445 -0.8162 17 1 8.8072 -4.3553 -0.6084 18 1 7.6605 -5.2700 1.3227 19 6 3.9854 -0.5133 0.0005 20 16 2.4947 -1.4481 0.0006 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8249 2.0815 0.0004 25 1 4.5155 2.8425 0.0000 26 1 8.1815 2.0338 0.0109 27 1 7.4061 -0.3225 0.0001 28 1 8.4187 -2.3003 1.6564 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396351991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:56 Heat of formation + Delta-G solvation = -26.831683 kcal Electronic energy + Delta-G solvation = -14666.299326 eV Core-core repulsion = 12158.249879 eV Total energy + Delta-G solvation = -2508.049447 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43452 -39.15791 -36.90944 -35.14308 -32.23309 -31.71894 -27.74660 -27.34567 -25.46179 -22.80031 -22.43294 -20.45039 -19.18099 -17.98475 -17.34681 -16.68244 -16.33633 -15.86596 -15.49344 -15.19653 -14.72851 -14.66270 -14.32484 -13.82312 -13.66813 -13.26517 -13.11329 -12.81278 -12.64502 -12.24306 -12.18986 -11.75152 -11.45778 -11.31694 -11.10170 -10.62832 -10.11315 -9.09527 -8.78073 -8.55376 -6.39484 -0.03194 0.22125 0.92959 1.23373 1.40693 1.42724 1.54539 1.68221 1.79897 2.18731 2.69851 3.49758 3.51534 3.94043 4.38715 4.45178 4.48500 4.60390 4.74442 4.79237 4.86345 5.11717 5.12659 5.19313 5.31219 5.44656 5.64904 5.76730 5.84843 6.08232 6.41444 6.58009 6.73306 6.77325 8.21834 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.010382 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.176008 B = 2696.451760 C = 4337.489634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.073 4.073 5 C -0.167 4.167 6 C -0.170 4.170 7 C 0.400 3.600 8 O -0.509 6.509 9 C -0.135 4.135 10 C 0.104 3.896 11 C -0.480 4.480 12 H 0.075 0.925 13 C 0.044 3.956 14 N -0.808 5.808 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.257 1.257 18 H -0.265 1.265 19 C -0.222 4.222 20 S 0.045 5.955 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.155 0.845 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -0.916 -1.708 5.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.278 4.278 3 C -0.177 4.177 4 C -0.080 4.080 5 C -0.188 4.188 6 C -0.173 4.173 7 C 0.263 3.737 8 O -0.387 6.387 9 C -0.159 4.159 10 C 0.098 3.902 11 C -0.508 4.508 12 H 0.094 0.906 13 C -0.173 4.173 14 N -0.433 5.433 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.181 1.181 18 H -0.190 1.190 19 C -0.338 4.338 20 S 0.308 5.692 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.172 0.828 25 H 0.129 0.871 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.277 -1.819 -1.551 5.793 hybrid contribution 0.840 0.700 0.036 1.094 sum -4.437 -1.118 -1.514 4.820 Atomic orbital electron populations 1.20466 0.84975 1.03780 1.04227 1.24338 1.01400 0.95328 1.06724 1.20985 0.90505 1.00061 1.06107 1.19339 0.93816 0.92265 1.02612 1.20591 0.90963 0.97275 1.10016 1.20641 0.95071 0.95440 1.06114 1.24433 0.95196 0.86524 0.67544 1.90405 1.88635 1.21547 1.38071 1.21419 0.99395 0.90067 1.05017 1.17296 0.88285 0.94601 0.90000 1.19693 1.02607 0.92323 1.36210 0.90644 1.26664 0.95339 1.03761 0.91578 1.69818 1.12993 1.39491 1.21002 0.85170 0.79046 0.76422 0.79285 1.18564 1.18148 1.19009 1.23181 0.97610 0.95829 1.17143 1.83464 0.95532 1.09475 1.80743 0.90691 0.89123 0.88973 0.82761 0.87145 0.84815 0.85014 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.32 71.24 0.74 -1.01 15 2 C -0.16 -5.59 6.38 24.95 0.16 -5.43 15 3 C -0.15 -5.53 10.21 23.43 0.24 -5.29 15 4 C -0.07 -3.38 6.02 -20.39 -0.12 -3.50 15 5 C -0.17 -7.71 9.64 23.21 0.22 -7.49 15 6 C -0.17 -7.74 5.84 -20.34 -0.12 -7.86 15 7 C 0.40 15.46 11.43 70.12 0.80 16.27 15 8 O -0.51 -21.76 17.11 -3.03 -0.05 -21.81 15 9 C -0.14 -6.62 8.40 23.03 0.19 -6.42 15 10 C 0.10 5.39 5.59 -21.15 -0.12 5.27 15 11 C -0.48 -24.37 8.81 23.36 0.21 -24.17 15 12 H 0.08 3.80 7.74 -2.91 -0.02 3.78 15 13 C 0.04 2.04 5.12 85.24 0.44 2.48 15 14 N -0.81 -38.18 10.98 21.82 0.24 -37.94 15 15 Si 0.98 35.30 29.60 68.60 2.03 37.33 15 16 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 18 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 19 C -0.22 -10.92 6.38 23.64 0.15 -10.77 15 20 S 0.05 1.85 22.76 -56.49 -1.29 0.56 15 21 H 0.07 1.58 8.13 -2.39 -0.02 1.56 15 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.09 1.77 8.14 -2.38 -0.02 1.75 15 24 H 0.15 4.85 8.06 -2.92 -0.02 4.83 15 25 H 0.11 4.86 7.58 -2.91 -0.02 4.84 15 26 H 0.14 4.06 8.06 -2.91 -0.02 4.03 15 27 H 0.13 6.31 6.16 -2.91 -0.02 6.29 15 28 H 0.30 12.40 8.30 -92.71 -0.77 11.63 15 Total: -1.00 -59.55 266.20 4.90 -54.65 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.18 Total: 15.13 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 2.79 Total: -47.93 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.24 Total: -37.94 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -1.29 Total: 0.56 kcal Total: -59.55 4.90 -54.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396351991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.818 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds