Wall clock time and date at job start Mon Mar 30 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36085 * 119.92165 * 2 1 4 4 C 1.40163 * 120.74427 * 179.72789 * 3 2 1 5 5 S 1.75829 * 130.06073 * 180.22209 * 4 3 2 6 6 C 1.69947 * 93.27735 * 180.30198 * 5 4 3 7 7 C 1.36404 * 112.04752 * 359.97438 * 6 5 4 8 8 C 1.40725 * 123.30195 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99674 * 159.11814 * 8 7 6 10 10 C 1.39790 * 119.99821 * 339.12233 * 8 7 6 11 11 N 1.31021 * 120.00376 * 344.92014 * 10 8 7 12 12 Si 1.86803 * 119.99695 * 164.91856 * 10 8 7 13 13 H 1.48501 * 109.47173 * 59.99686 * 12 10 8 14 14 H 1.48495 * 109.47035 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47094 * 299.99720 * 12 10 8 16 16 C 1.39733 * 119.84052 * 0.54643 * 4 3 2 17 17 C 1.40006 * 119.35337 * 359.73397 * 16 4 3 18 18 C 1.39329 * 120.03732 * 0.02562 * 17 16 4 19 19 C 1.46846 * 120.06954 * 180.02562 * 18 17 16 20 20 O 1.21306 * 119.99792 * 359.97066 * 19 18 17 21 21 H 1.08996 * 109.47206 * 269.72605 * 1 2 3 22 22 H 1.08999 * 109.47282 * 29.72659 * 1 2 3 23 23 H 1.09002 * 109.47161 * 149.72550 * 1 2 3 24 24 H 1.07997 * 119.63274 * 359.97438 * 3 2 1 25 25 H 1.08001 * 123.97969 * 180.02562 * 6 5 4 26 26 H 0.96997 * 120.00177 * 180.02562 * 11 10 8 27 27 H 1.08005 * 119.97993 * 180.02562 * 17 16 4 28 28 H 1.07991 * 120.00213 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1795 0.0000 4 6 3.5873 1.1996 0.0057 5 16 4.6994 2.5614 0.0123 6 6 6.0750 1.5635 0.0074 7 6 5.7471 0.2395 0.0016 8 6 6.7029 -0.7933 -0.0028 9 1 6.4283 -1.7846 0.3262 10 6 8.0079 -0.5360 -0.4329 11 7 8.2735 0.5591 -1.1013 12 14 9.3731 -1.7536 -0.0546 13 1 9.0470 -3.0680 -0.6640 14 1 10.6534 -1.2516 -0.6149 15 1 9.5043 -1.9090 1.4165 16 6 4.2999 -0.0023 -0.0001 17 6 3.6003 -1.2150 -0.0059 18 6 2.2070 -1.2164 -0.0064 19 6 1.4724 -2.4879 -0.0119 20 8 2.0787 -3.5386 -0.0166 21 1 -0.3633 -0.0049 1.0276 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3633 -0.8875 -0.5181 24 1 1.6385 2.1105 -0.0004 25 1 7.0895 1.9339 0.0096 26 1 9.1789 0.7375 -1.4001 27 1 4.1409 -2.1500 -0.0099 28 1 0.3925 -2.4877 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396353975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:47 Heat of formation + Delta-G solvation = -28.456140 kcal Electronic energy + Delta-G solvation = -14700.598668 eV Core-core repulsion = 12192.478779 eV Total energy + Delta-G solvation = -2508.119888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89960 -39.29837 -37.06724 -34.69668 -32.17280 -31.61999 -28.25214 -27.37661 -25.55550 -23.04084 -22.40554 -20.80688 -18.81102 -18.36905 -17.31709 -16.85590 -16.54693 -15.60396 -15.45087 -15.33683 -14.69754 -14.55962 -14.41771 -13.75103 -13.72054 -13.30616 -12.99054 -12.92096 -12.63300 -12.41245 -12.28416 -11.74360 -11.54020 -11.32257 -11.06069 -10.64247 -10.27440 -9.11646 -8.71720 -8.54814 -6.35470 -0.33180 0.21244 1.05125 1.24152 1.31945 1.43355 1.44996 1.85065 1.95755 2.17064 2.77505 3.29298 3.40663 3.85290 3.97131 4.33478 4.36845 4.51585 4.64761 4.88778 5.01015 5.02473 5.12511 5.24605 5.35727 5.36949 5.51867 5.64830 5.88892 6.02804 6.43501 6.56424 6.74959 6.85524 8.30694 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.008241 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.410127 B = 3396.998913 C = 4550.273973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 C -0.114 4.114 4 C -0.125 4.125 5 S 0.093 5.907 6 C -0.402 4.402 7 C 0.059 3.941 8 C -0.474 4.474 9 H 0.069 0.931 10 C 0.030 3.970 11 N -0.824 5.824 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.264 1.264 15 H -0.261 1.261 16 C -0.128 4.128 17 C -0.025 4.025 18 C -0.225 4.225 19 C 0.395 3.605 20 O -0.515 6.515 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.154 0.846 25 H 0.136 0.864 26 H 0.286 0.714 27 H 0.106 0.894 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.396 0.574 1.655 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.026 4.026 3 C -0.138 4.138 4 C -0.241 4.241 5 S 0.358 5.642 6 C -0.537 4.537 7 C 0.051 3.949 8 C -0.506 4.506 9 H 0.088 0.912 10 C -0.184 4.184 11 N -0.451 5.451 12 Si 0.804 3.196 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.185 1.185 16 C -0.137 4.137 17 C -0.045 4.045 18 C -0.230 4.230 19 C 0.258 3.742 20 O -0.392 6.392 21 H 0.115 0.885 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.172 0.828 25 H 0.154 0.846 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.898 1.758 1.529 13.107 hybrid contribution 1.940 -1.724 -0.038 2.595 sum -10.958 0.035 1.491 11.059 Atomic orbital electron populations 1.21025 0.86354 1.05118 1.04573 1.19977 0.98239 0.89999 0.94434 1.20394 0.89321 0.99863 1.04239 1.23420 0.98783 0.97165 1.04737 1.81342 0.95075 1.08296 1.79487 1.24189 1.00829 0.96495 1.32219 1.17767 0.89612 0.93576 0.93962 1.19232 0.95177 0.96577 1.39630 0.91246 1.26698 1.01739 0.98106 0.91895 1.69918 1.22626 1.26125 1.26437 0.85226 0.76300 0.78324 0.79723 1.18545 1.18827 1.18540 1.19756 0.93973 0.93811 1.06202 1.21199 0.94333 0.95892 0.93078 1.20774 0.92805 0.97663 1.11732 1.24673 0.96773 0.84756 0.67972 1.90517 1.74917 1.35898 1.37869 0.88521 0.89350 0.88917 0.82829 0.84643 0.90342 0.87583 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.51 71.23 0.68 -0.92 15 2 C -0.02 -0.62 5.88 -19.85 -0.12 -0.73 15 3 C -0.11 -3.66 9.62 22.24 0.21 -3.45 15 4 C -0.12 -5.35 6.46 23.10 0.15 -5.20 15 5 S 0.09 4.11 22.96 -56.49 -1.30 2.82 15 6 C -0.40 -22.15 9.51 67.39 0.64 -21.51 15 7 C 0.06 3.37 5.69 -20.88 -0.12 3.25 15 8 C -0.47 -27.18 9.06 23.25 0.21 -26.97 15 9 H 0.07 3.89 7.66 -2.91 -0.02 3.87 15 10 C 0.03 1.59 5.31 85.19 0.45 2.05 15 11 N -0.82 -45.54 10.90 21.81 0.24 -45.30 15 12 Si 0.98 40.80 29.59 68.60 2.03 42.83 15 13 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 14 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 15 H -0.26 -10.59 7.11 99.48 0.71 -9.89 15 16 C -0.13 -6.35 6.02 -20.27 -0.12 -6.48 15 17 C -0.02 -1.11 9.41 22.96 0.22 -0.89 15 18 C -0.22 -7.49 5.86 -20.25 -0.12 -7.61 15 19 C 0.40 10.72 10.87 70.07 0.76 11.48 15 20 O -0.52 -18.85 17.14 -3.11 -0.05 -18.91 15 21 H 0.10 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.09 0.99 8.08 -2.39 -0.02 0.97 15 23 H 0.09 0.88 6.31 -2.39 -0.02 0.86 15 24 H 0.15 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.14 8.00 6.31 -2.91 -0.02 7.99 15 26 H 0.29 14.32 8.30 -92.71 -0.77 13.55 15 27 H 0.11 5.05 7.40 -2.91 -0.02 5.03 15 28 H 0.17 2.31 6.34 -2.92 -0.02 2.30 15 Total: -1.00 -70.44 261.67 4.96 -65.49 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.19 Total: 10.05 kcal Atomic # 6 Polarization: -59.82 SS G_CDS: 2.85 Total: -56.97 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.24 Total: -45.30 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.82 kcal Total: -70.44 4.96 -65.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396353975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.030 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds