Wall clock time and date at job start Mon Mar 30 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37292 * 119.61097 * 2 1 4 4 C 1.38306 * 120.78800 * 179.97438 * 3 2 1 5 5 C 1.39636 * 120.03390 * 359.97438 * 4 3 2 6 6 C 1.46679 * 120.00395 * 180.02562 * 5 4 3 7 7 O 1.21320 * 119.99742 * 180.02562 * 6 5 4 8 8 C 1.41286 * 119.98813 * 0.02562 * 5 4 3 9 9 S 1.75958 * 130.29988 * 180.02562 * 8 5 4 10 10 C 1.75456 * 91.79028 * 179.97438 * 9 8 5 11 11 C 1.39876 * 124.82702 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00024 * 173.30131 * 11 10 9 13 13 C 1.40227 * 119.99895 * 353.30107 * 11 10 9 14 14 N 1.30734 * 119.99756 * 6.60961 * 13 11 10 15 15 Si 1.86798 * 119.99845 * 186.60554 * 13 11 10 16 16 H 1.48493 * 109.46923 * 94.98981 * 15 13 11 17 17 H 1.48507 * 109.46937 * 214.98837 * 15 13 11 18 18 H 1.48493 * 109.47291 * 334.98983 * 15 13 11 19 19 C 1.36915 * 110.35132 * 0.02562 * 10 9 8 20 20 C 1.39861 * 115.03728 * 359.75174 * 19 10 9 21 21 H 1.09006 * 109.46930 * 89.99950 * 1 2 3 22 22 H 1.09001 * 109.47112 * 330.00248 * 1 2 3 23 23 H 1.09000 * 109.47060 * 209.99610 * 1 2 3 24 24 H 1.07999 * 119.61157 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.98315 * 180.02562 * 4 3 2 26 26 H 1.07998 * 120.00181 * 0.02562 * 6 5 4 27 27 H 0.97006 * 120.00041 * 179.97438 * 14 13 11 28 28 H 1.07997 * 122.48009 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.1936 0.0000 4 6 3.5682 1.2220 0.0005 5 6 4.2917 0.0278 0.0016 6 6 5.7582 0.0587 0.0027 7 8 6.3868 -0.9790 0.0032 8 6 3.6111 -1.2103 0.0016 9 16 4.2388 -2.8541 0.0034 10 6 2.6200 -3.5309 0.0028 11 6 2.3259 -4.8984 0.0031 12 1 1.3041 -5.2310 0.1118 13 6 3.3577 -5.8375 -0.1376 14 7 4.6043 -5.4436 -0.1392 15 14 2.9510 -7.6513 -0.3225 16 1 2.9119 -8.0052 -1.7641 17 1 3.9909 -8.4637 0.3587 18 1 1.6270 -7.9268 0.2909 19 6 1.6855 -2.5303 0.0007 20 6 2.2077 -1.2328 0.0051 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.6328 2.1215 -0.0004 25 1 4.0885 2.1684 0.0009 26 1 6.2784 1.0051 0.0032 27 1 5.3181 -6.0932 -0.2361 28 1 0.6238 -2.7282 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396354000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:15 Heat of formation + Delta-G solvation = -23.821488 kcal Electronic energy + Delta-G solvation = -14777.940819 eV Core-core repulsion = 12270.021904 eV Total energy + Delta-G solvation = -2507.918915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.87060 -37.59587 -34.95012 -33.16803 -31.93177 -29.09515 -27.15931 -25.29544 -22.87213 -22.07790 -20.16268 -19.18811 -17.57200 -15.98613 -15.78113 -15.09264 -14.66138 -13.91625 -13.79765 -13.68318 -13.20204 -12.98859 -12.76386 -11.95518 -11.70358 -11.68240 -11.52876 -11.42732 -11.20992 -10.57321 -10.38314 -10.34919 -9.97197 -9.40339 -9.30662 -8.67937 -8.28638 -7.43064 -7.17378 -6.40893 -4.68090 1.36662 2.26541 2.73259 2.84832 2.91452 3.07664 3.27785 3.59191 3.68684 3.90720 4.59612 4.92622 5.00809 5.56572 5.71331 5.88295 5.93088 6.18423 6.20369 6.38631 6.54191 6.66268 6.74579 6.99587 7.05585 7.26046 7.33122 7.47210 7.72933 7.85493 7.99208 8.12294 8.29974 8.41079 9.65687 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.008453 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.346677 B = 3311.810562 C = 4319.415392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.095 4.095 3 C -0.129 4.129 4 C -0.137 4.137 5 C -0.143 4.143 6 C 0.369 3.631 7 O -0.457 6.457 8 C -0.213 4.213 9 S 0.197 5.803 10 C 0.032 3.968 11 C -0.381 4.381 12 H 0.098 0.902 13 C 0.052 3.948 14 N -0.771 5.771 15 Si 0.939 3.061 16 H -0.263 1.263 17 H -0.270 1.270 18 H -0.256 1.256 19 C -0.365 4.365 20 C 0.009 3.991 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.302 0.698 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 4.734 -0.129 4.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.228 3.772 7 O -0.332 6.332 8 C -0.329 4.329 9 S 0.459 5.541 10 C -0.088 4.088 11 C -0.415 4.415 12 H 0.116 0.884 13 C -0.170 4.170 14 N -0.397 5.397 15 Si 0.761 3.239 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.180 1.180 19 C -0.390 4.390 20 C 0.001 3.999 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.485 3.409 -0.135 3.446 hybrid contribution -1.722 0.122 -0.113 1.730 sum -1.237 3.531 -0.248 3.750 Atomic orbital electron populations 1.20632 0.92575 1.01531 1.01121 1.19820 0.94744 0.91991 1.03155 1.20282 0.93946 0.96251 1.04512 1.20685 0.93915 0.95547 1.05621 1.19962 0.94609 0.92354 1.08005 1.23921 0.89094 0.92815 0.71348 1.90516 1.69712 1.37911 1.35058 1.24099 0.97403 1.01039 1.10388 1.85574 1.04470 0.88071 1.75947 1.21801 0.96090 0.96654 0.94219 1.19330 0.95775 0.89041 1.37306 0.88407 1.26372 0.94124 1.03904 0.92621 1.68662 1.00691 1.38359 1.31944 0.85746 0.79892 0.78486 0.79737 1.18812 1.19521 1.17969 1.19539 0.98011 0.89593 1.31809 1.17892 0.91297 0.93142 0.97613 0.92324 0.92868 0.91854 0.87525 0.86973 0.89500 0.88422 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.79 36.01 0.35 -1.38 15 2 C -0.09 -1.97 5.96 -103.61 -0.62 -2.58 15 3 C -0.13 -2.38 9.59 -39.90 -0.38 -2.76 15 4 C -0.14 -2.49 9.78 -39.03 -0.38 -2.87 15 5 C -0.14 -3.02 5.89 -104.81 -0.62 -3.64 15 6 C 0.37 6.96 11.42 34.14 0.39 7.35 15 7 O -0.46 -10.34 15.77 5.52 0.09 -10.25 15 8 C -0.21 -5.27 6.34 -37.63 -0.24 -5.51 15 9 S 0.20 5.15 18.26 -107.50 -1.96 3.19 15 10 C 0.03 0.84 6.10 -39.45 -0.24 0.60 15 11 C -0.38 -9.57 9.26 -38.22 -0.35 -9.92 15 12 H 0.10 2.30 7.86 -52.49 -0.41 1.89 15 13 C 0.05 1.21 5.49 -17.27 -0.09 1.11 15 14 N -0.77 -18.73 10.62 55.56 0.59 -18.14 15 15 Si 0.94 17.20 29.57 -169.99 -5.03 12.18 15 16 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 17 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 18 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 19 C -0.37 -9.29 9.55 -39.45 -0.38 -9.66 15 20 C 0.01 0.21 5.82 -107.13 -0.62 -0.41 15 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.05 0.76 8.07 -51.93 -0.42 0.34 15 23 H 0.06 1.11 7.10 -51.93 -0.37 0.74 15 24 H 0.11 1.61 8.06 -52.49 -0.42 1.18 15 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.09 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.30 6.58 8.29 -40.82 -0.34 6.24 15 28 H 0.11 2.56 7.34 -52.49 -0.39 2.18 15 LS Contribution 261.50 15.07 3.94 3.94 Total: -1.00 -28.79 261.50 -7.97 -36.75 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.41 Total: 2.01 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -3.18 Total: -29.69 kcal Atomic # 7 Polarization: -18.73 SS G_CDS: 0.59 Total: -18.14 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.96 Total: 3.19 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.79 -7.97 -36.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.933 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds