Wall clock time and date at job start Mon Mar 30 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37292 * 119.61097 * 2 1 4 4 C 1.38306 * 120.78800 * 179.97438 * 3 2 1 5 5 C 1.39636 * 120.03390 * 359.97438 * 4 3 2 6 6 C 1.46679 * 120.00395 * 180.02562 * 5 4 3 7 7 O 1.21320 * 119.99742 * 180.02562 * 6 5 4 8 8 C 1.41286 * 119.98813 * 0.02562 * 5 4 3 9 9 S 1.75958 * 130.29988 * 180.02562 * 8 5 4 10 10 C 1.75456 * 91.79028 * 179.97438 * 9 8 5 11 11 C 1.39876 * 124.82702 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00024 * 173.30131 * 11 10 9 13 13 C 1.40227 * 119.99895 * 353.30107 * 11 10 9 14 14 N 1.30734 * 119.99756 * 6.60961 * 13 11 10 15 15 Si 1.86798 * 119.99845 * 186.60554 * 13 11 10 16 16 H 1.48493 * 109.46923 * 94.98981 * 15 13 11 17 17 H 1.48507 * 109.46937 * 214.98837 * 15 13 11 18 18 H 1.48493 * 109.47291 * 334.98983 * 15 13 11 19 19 C 1.36915 * 110.35132 * 0.02562 * 10 9 8 20 20 C 1.39861 * 115.03728 * 359.75174 * 19 10 9 21 21 H 1.09006 * 109.46930 * 89.99950 * 1 2 3 22 22 H 1.09001 * 109.47112 * 330.00248 * 1 2 3 23 23 H 1.09000 * 109.47060 * 209.99610 * 1 2 3 24 24 H 1.07999 * 119.61157 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.98315 * 180.02562 * 4 3 2 26 26 H 1.07998 * 120.00181 * 0.02562 * 6 5 4 27 27 H 0.97006 * 120.00041 * 179.97438 * 14 13 11 28 28 H 1.07997 * 122.48009 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.1936 0.0000 4 6 3.5682 1.2220 0.0005 5 6 4.2917 0.0278 0.0016 6 6 5.7582 0.0587 0.0027 7 8 6.3868 -0.9790 0.0032 8 6 3.6111 -1.2103 0.0016 9 16 4.2388 -2.8541 0.0034 10 6 2.6200 -3.5309 0.0028 11 6 2.3259 -4.8984 0.0031 12 1 1.3041 -5.2310 0.1118 13 6 3.3577 -5.8375 -0.1376 14 7 4.6043 -5.4436 -0.1392 15 14 2.9510 -7.6513 -0.3225 16 1 2.9119 -8.0052 -1.7641 17 1 3.9909 -8.4637 0.3587 18 1 1.6270 -7.9268 0.2909 19 6 1.6855 -2.5303 0.0007 20 6 2.2077 -1.2328 0.0051 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.6328 2.1215 -0.0004 25 1 4.0885 2.1684 0.0009 26 1 6.2784 1.0051 0.0032 27 1 5.3181 -6.0932 -0.2361 28 1 0.6238 -2.7282 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396354000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:15 Heat of formation + Delta-G solvation = -40.025516 kcal Electronic energy + Delta-G solvation = -14778.643478 eV Core-core repulsion = 12270.021904 eV Total energy + Delta-G solvation = -2508.621574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46771 -39.21763 -36.70958 -34.89061 -33.46797 -30.84827 -28.65527 -27.05342 -24.50062 -23.65533 -21.80291 -20.90881 -19.35479 -17.60890 -17.44231 -16.64569 -16.31435 -15.50740 -15.44154 -15.29973 -14.74852 -14.49391 -14.38526 -13.61811 -13.35349 -13.30932 -13.02968 -12.94470 -12.85365 -12.06546 -11.97047 -11.95330 -11.69876 -11.09994 -11.02450 -10.36692 -9.96332 -9.20618 -8.90021 -8.28480 -6.54838 -0.19556 0.55384 1.20962 1.31651 1.43746 1.51374 1.57547 1.96117 2.02234 2.13927 2.87692 3.25383 3.56554 4.18567 4.23491 4.47135 4.52146 4.77977 4.86292 4.88725 4.91992 4.99312 5.17748 5.38986 5.49113 5.52421 5.61617 5.76767 5.96017 6.07993 6.30588 6.51334 6.56306 6.68992 7.96202 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.027275 B = 0.008453 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.346677 B = 3311.810562 C = 4319.415392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.098 4.098 3 C -0.130 4.130 4 C -0.102 4.102 5 C -0.174 4.174 6 C 0.374 3.626 7 O -0.504 6.504 8 C -0.243 4.243 9 S 0.143 5.857 10 C 0.002 3.998 11 C -0.420 4.420 12 H 0.100 0.900 13 C 0.014 3.986 14 N -0.805 5.805 15 Si 1.015 2.985 16 H -0.257 1.257 17 H -0.259 1.259 18 H -0.250 1.250 19 C -0.387 4.387 20 C -0.027 4.027 21 H 0.070 0.930 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.156 0.844 25 H 0.171 0.829 26 H 0.161 0.839 27 H 0.310 0.690 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 7.630 -0.239 7.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.122 4.122 5 C -0.180 4.180 6 C 0.236 3.764 7 O -0.381 6.381 8 C -0.359 4.359 9 S 0.405 5.595 10 C -0.117 4.117 11 C -0.453 4.453 12 H 0.118 0.882 13 C -0.204 4.204 14 N -0.431 5.431 15 Si 0.832 3.168 16 H -0.182 1.182 17 H -0.183 1.183 18 H -0.173 1.173 19 C -0.412 4.412 20 C -0.034 4.034 21 H 0.088 0.912 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.173 0.827 25 H 0.188 0.812 26 H 0.176 0.824 27 H 0.123 0.877 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.077 6.344 -0.241 6.349 hybrid contribution -1.642 -0.378 -0.071 1.687 sum -1.565 5.966 -0.312 6.176 Atomic orbital electron populations 1.20688 0.90229 1.02599 1.02174 1.20382 0.96804 0.91517 1.01340 1.20911 0.94578 0.97036 1.02467 1.21414 0.94082 0.96494 1.00163 1.20597 0.96626 0.92074 1.08685 1.24781 0.88125 0.94421 0.69051 1.90524 1.70165 1.40230 1.37139 1.24318 0.97934 1.01208 1.12413 1.85413 1.05690 0.90942 1.77496 1.22120 0.96230 0.97743 0.95586 1.19618 0.96638 0.89402 1.39662 0.88170 1.27380 0.93418 1.08355 0.91252 1.68772 1.01738 1.40057 1.32514 0.84673 0.79963 0.72250 0.79903 1.18156 1.18348 1.17344 1.19714 0.97759 0.90660 1.33019 1.18207 0.91817 0.94087 0.99329 0.91154 0.89264 0.93326 0.82672 0.81173 0.82363 0.87710 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.17 9.79 71.24 0.70 -2.47 15 2 C -0.10 -3.86 5.96 -19.21 -0.11 -3.98 15 3 C -0.13 -4.10 9.59 22.06 0.21 -3.88 15 4 C -0.10 -3.13 9.78 22.62 0.22 -2.91 15 5 C -0.17 -6.97 5.89 -19.99 -0.12 -7.09 15 6 C 0.37 13.18 11.42 70.03 0.80 13.98 15 7 O -0.50 -22.85 15.77 -3.15 -0.05 -22.90 15 8 C -0.24 -12.27 6.34 23.54 0.15 -12.12 15 9 S 0.14 7.98 18.26 -56.49 -1.03 6.94 15 10 C 0.00 0.11 6.10 22.36 0.14 0.25 15 11 C -0.42 -22.55 9.26 23.15 0.21 -22.33 15 12 H 0.10 5.06 7.86 -2.91 -0.02 5.04 15 13 C 0.01 0.69 5.49 85.34 0.47 1.16 15 14 N -0.80 -41.39 10.62 21.88 0.23 -41.16 15 15 Si 1.01 36.20 29.57 68.60 2.03 38.23 15 16 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 17 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 18 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 19 C -0.39 -20.88 9.55 22.35 0.21 -20.66 15 20 C -0.03 -1.33 5.82 -21.49 -0.12 -1.45 15 21 H 0.07 2.07 8.14 -2.38 -0.02 2.05 15 22 H 0.09 2.16 8.07 -2.39 -0.02 2.14 15 23 H 0.05 1.67 7.10 -2.39 -0.02 1.65 15 24 H 0.16 3.48 8.06 -2.91 -0.02 3.45 15 25 H 0.17 3.31 8.06 -2.91 -0.02 3.29 15 26 H 0.16 3.37 8.06 -2.91 -0.02 3.34 15 27 H 0.31 14.17 8.29 -92.70 -0.77 13.40 15 28 H 0.10 5.39 7.34 -2.91 -0.02 5.37 15 Total: -1.00 -69.77 261.50 5.12 -64.66 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.18 Total: 15.74 kcal Atomic # 6 Polarization: -64.27 SS G_CDS: 2.76 Total: -61.51 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.23 Total: -41.16 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -1.03 Total: 6.94 kcal Total: -69.77 5.12 -64.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.631 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds