Wall clock time and date at job start Mon Mar 30 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36948 * 119.04678 * 2 1 4 4 C 1.40025 * 120.57953 * 179.97438 * 3 2 1 5 5 C 1.46235 * 120.57156 * 179.97438 * 4 3 2 6 6 O 1.21398 * 119.99868 * 1.91672 * 5 4 3 7 7 C 1.46486 * 118.86319 * 359.77975 * 4 3 2 8 8 C 1.40163 * 120.46379 * 180.02562 * 7 4 3 9 9 H 1.07992 * 119.99751 * 39.03077 * 8 7 4 10 10 C 1.40474 * 120.00052 * 219.03550 * 8 7 4 11 11 N 1.30541 * 119.99878 * 20.82782 * 10 8 7 12 12 Si 1.86798 * 120.00177 * 200.83226 * 10 8 7 13 13 H 1.48497 * 109.47263 * 59.99666 * 12 10 8 14 14 H 1.48500 * 109.47099 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46781 * 299.99587 * 12 10 8 16 16 C 1.42152 * 119.07195 * 0.43743 * 7 4 3 17 17 S 1.75933 * 130.27487 * 179.86638 * 16 7 4 18 18 C 1.75286 * 92.14837 * 179.71709 * 17 16 7 19 19 C 1.31986 * 111.33113 * 359.97438 * 18 17 16 20 20 C 1.39649 * 119.89804 * 359.55750 * 16 7 4 21 21 H 1.08998 * 109.46885 * 270.02322 * 1 2 3 22 22 H 1.08996 * 109.47327 * 30.02685 * 1 2 3 23 23 H 1.09004 * 109.46938 * 150.02476 * 1 2 3 24 24 H 1.08006 * 119.70746 * 359.95223 * 3 2 1 25 25 H 1.08005 * 120.00037 * 181.91381 * 5 4 3 26 26 H 0.97006 * 120.00072 * 174.96373 * 11 10 8 27 27 H 1.08004 * 124.33084 * 179.97438 * 18 17 16 28 28 H 1.08003 * 122.51039 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1972 0.0000 4 6 3.5716 1.2347 0.0005 5 6 4.2815 2.5132 0.0000 6 8 3.6574 3.5539 0.0342 7 6 4.3128 -0.0288 0.0060 8 6 5.7144 -0.0305 0.0073 9 1 6.2547 0.6977 0.5939 10 6 6.4164 -0.9792 -0.7547 11 7 5.8278 -1.5786 -1.7538 12 14 8.1919 -1.3831 -0.3380 13 1 8.2676 -1.9094 1.0485 14 1 8.7017 -2.4077 -1.2844 15 1 9.0178 -0.1537 -0.4466 16 6 3.5907 -1.2532 0.0012 17 16 4.1691 -2.9148 0.0025 18 6 2.5364 -3.5527 0.0022 19 6 1.6418 -2.5823 0.0018 20 6 2.1943 -1.2378 0.0006 21 1 -0.3633 0.0004 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6116 2.1206 -0.0008 25 1 5.3609 2.5316 -0.0308 26 1 6.3326 -2.1787 -2.3249 27 1 2.2937 -4.6051 0.0024 28 1 0.5787 -2.7729 0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396354052.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:18 Heat of formation + Delta-G solvation = -13.729869 kcal Electronic energy + Delta-G solvation = -15093.059798 eV Core-core repulsion = 12585.578488 eV Total energy + Delta-G solvation = -2507.481309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.45873 -37.16853 -34.82053 -33.51320 -31.47734 -28.53629 -27.58075 -24.45484 -23.60967 -21.40729 -20.34858 -18.84693 -17.79574 -15.90522 -15.57623 -15.17809 -14.38517 -14.26652 -13.78088 -13.27358 -12.90544 -12.72472 -12.63843 -12.12615 -11.82768 -11.80668 -11.70271 -11.24693 -11.11169 -10.77982 -10.70357 -10.14015 -9.93178 -9.59706 -9.15236 -8.52947 -8.24901 -7.38743 -7.30736 -6.42361 -4.83148 1.49139 2.54656 2.69734 2.76905 2.88525 2.90787 3.08501 3.29089 3.63941 3.81952 4.27177 5.15400 5.48480 5.64084 5.95295 6.03477 6.04473 6.31627 6.32121 6.44961 6.50983 6.58997 6.70924 6.76845 7.05849 7.13976 7.32126 7.39019 7.76109 7.86256 8.02980 8.25997 8.40644 8.77785 9.67516 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.012609 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.091667 B = 2220.187807 C = 3586.385761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.196 4.196 3 C -0.011 4.011 4 C -0.313 4.313 5 C 0.393 3.607 6 O -0.529 6.529 7 C 0.193 3.807 8 C -0.451 4.451 9 H 0.098 0.902 10 C 0.071 3.929 11 N -0.740 5.740 12 Si 0.908 3.092 13 H -0.256 1.256 14 H -0.272 1.272 15 H -0.259 1.259 16 C -0.174 4.174 17 S 0.112 5.888 18 C -0.229 4.229 19 C -0.136 4.136 20 C -0.020 4.020 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.297 0.703 27 H 0.147 0.853 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 -4.808 1.420 5.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.199 4.199 3 C -0.031 4.031 4 C -0.319 4.319 5 C 0.262 3.738 6 O -0.412 6.412 7 C 0.186 3.814 8 C -0.478 4.478 9 H 0.116 0.884 10 C -0.154 4.154 11 N -0.362 5.362 12 Si 0.731 3.269 13 H -0.180 1.180 14 H -0.196 1.196 15 H -0.183 1.183 16 C -0.290 4.290 17 S 0.379 5.621 18 C -0.364 4.364 19 C -0.169 4.169 20 C -0.029 4.029 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.164 0.836 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.524 -5.283 1.263 5.458 hybrid contribution -0.631 0.100 -0.081 0.644 sum -0.108 -5.183 1.183 5.318 Atomic orbital electron populations 1.20450 0.93142 1.00704 1.00117 1.18803 0.93986 0.90951 1.16176 1.20457 0.93393 0.95699 0.93580 1.21144 0.93215 0.93662 1.23882 1.23251 0.94204 0.86715 0.69618 1.90392 1.72866 1.36150 1.41820 1.17930 0.92101 0.87467 0.83881 1.19610 0.91300 1.12856 1.23999 0.88377 1.26126 1.01964 0.93301 0.94040 1.69595 1.39027 1.18566 1.09037 0.86286 0.80579 0.79679 0.80381 1.17958 1.19626 1.18292 1.22663 0.94835 0.96299 1.15248 1.83722 1.03913 0.98193 1.76297 1.25308 0.99649 1.02104 1.09318 1.20838 0.99250 0.91310 1.05491 1.19017 0.91851 0.92276 0.99759 0.93504 0.93199 0.93253 0.87563 0.90189 0.89150 0.83561 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.78 36.00 0.35 -1.19 15 2 C -0.20 -4.30 5.94 -103.82 -0.62 -4.92 15 3 C -0.01 -0.26 9.12 -39.38 -0.36 -0.62 15 4 C -0.31 -7.56 6.06 -102.70 -0.62 -8.18 15 5 C 0.39 8.97 11.02 33.94 0.37 9.34 15 6 O -0.53 -12.98 17.18 5.45 0.09 -12.89 15 7 C 0.19 4.75 5.54 -104.35 -0.58 4.17 15 8 C -0.45 -10.54 8.05 -38.02 -0.31 -10.85 15 9 H 0.10 2.14 7.27 -52.49 -0.38 1.76 15 10 C 0.07 1.56 4.28 -17.26 -0.07 1.49 15 11 N -0.74 -16.92 10.65 55.58 0.59 -16.33 15 12 Si 0.91 16.54 29.61 -169.99 -5.03 11.50 15 13 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 14 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 15 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 16 C -0.17 -4.20 5.75 -37.55 -0.22 -4.41 15 17 S 0.11 2.38 19.85 -107.50 -2.13 0.24 15 18 C -0.23 -4.28 11.03 28.82 0.32 -3.96 15 19 C -0.14 -2.67 9.74 -38.67 -0.38 -3.05 15 20 C -0.02 -0.46 5.96 -105.26 -0.63 -1.09 15 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.82 8.06 -51.93 -0.42 0.40 15 23 H 0.05 0.80 7.11 -51.93 -0.37 0.43 15 24 H 0.11 2.35 7.65 -52.48 -0.40 1.95 15 25 H 0.08 1.66 6.96 -52.48 -0.37 1.29 15 26 H 0.30 6.15 8.30 -40.82 -0.34 5.81 15 27 H 0.15 2.22 8.06 -52.48 -0.42 1.79 15 28 H 0.12 2.06 7.41 -52.48 -0.39 1.68 15 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -26.67 259.83 -7.60 -34.27 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.30 Total: 2.55 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.73 Total: -23.27 kcal Atomic # 7 Polarization: -16.92 SS G_CDS: 0.59 Total: -16.33 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.50 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.13 Total: 0.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.67 -7.60 -34.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396354052.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.539 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds