Wall clock time and date at job start Mon Mar 30 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32272 * 122.08955 * 2 1 4 4 S 1.75516 * 110.71482 * 179.97438 * 3 2 1 5 5 C 1.75989 * 91.51165 * 359.97438 * 4 3 2 6 6 C 1.39497 * 109.37959 * 359.76055 * 5 4 3 7 7 C 1.47365 * 118.14660 * 179.72078 * 6 5 4 8 8 C 1.46354 * 120.07565 * 180.24215 * 7 6 5 9 9 O 1.21385 * 119.99998 * 186.20729 * 8 7 6 10 10 C 1.39897 * 119.84242 * 0.47019 * 7 6 5 11 11 C 1.36035 * 120.75005 * 359.77538 * 10 7 6 12 12 C 1.40628 * 120.83863 * 359.97438 * 11 10 7 13 13 C 1.40512 * 119.68487 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00516 * 205.91341 * 13 12 11 15 15 C 1.40412 * 119.99965 * 25.91211 * 13 12 11 16 16 N 1.30566 * 119.99384 * 17.84381 * 15 13 12 17 17 Si 1.86794 * 120.00192 * 197.84285 * 15 13 12 18 18 H 1.48506 * 109.47135 * 60.00244 * 17 15 13 19 19 H 1.48500 * 109.47067 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47157 * 300.00171 * 17 15 13 21 21 H 1.09004 * 109.46823 * 98.68893 * 1 2 3 22 22 H 1.08995 * 109.47213 * 338.69277 * 1 2 3 23 23 H 1.08998 * 109.47377 * 218.68761 * 1 2 3 24 24 H 1.07994 * 124.63929 * 359.94718 * 3 2 1 25 25 H 1.08004 * 120.00321 * 6.21116 * 8 7 6 26 26 H 1.08000 * 119.62526 * 179.80033 * 10 7 6 27 27 H 1.07994 * 119.58210 * 179.97438 * 11 10 7 28 28 H 0.97001 * 119.99327 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2096 1.1206 0.0000 4 16 3.9303 0.7745 0.0007 5 6 3.6289 -0.9594 0.0018 6 6 2.2531 -1.1900 0.0071 7 6 1.7823 -2.5864 0.0025 8 6 0.3479 -2.8768 0.0024 9 8 -0.0395 -4.0219 0.1123 10 6 2.7098 -3.6338 0.0031 11 6 4.0461 -3.3794 0.0033 12 6 4.5286 -2.0585 0.0023 13 6 5.9139 -1.8236 0.0031 14 1 6.3055 -0.9036 0.4112 15 6 6.7893 -2.7852 -0.5267 16 7 6.3331 -3.7165 -1.3200 17 14 8.6063 -2.7319 -0.0967 18 1 8.7713 -2.8676 1.3729 19 1 9.3092 -3.8483 -0.7784 20 1 9.1827 -1.4378 -0.5421 21 1 -0.3633 -0.1553 -1.0159 22 1 -0.3633 0.9574 0.3734 23 1 -0.3634 -0.8021 0.6423 24 1 1.7830 2.1127 -0.0008 25 1 -0.3660 -2.0723 -0.0956 26 1 2.3609 -4.6559 0.0030 27 1 4.7455 -4.2024 0.0041 28 1 6.9379 -4.3805 -1.6864 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396365291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:57 Heat of formation + Delta-G solvation = -17.027792 kcal Electronic energy + Delta-G solvation = -14910.379581 eV Core-core repulsion = 12402.755263 eV Total energy + Delta-G solvation = -2507.624318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46432 -38.91957 -37.33951 -35.17831 -32.26920 -30.54564 -29.43586 -27.38035 -24.60265 -23.51257 -21.87339 -20.76903 -19.05044 -18.18959 -17.07100 -16.78522 -16.32073 -15.87060 -15.39453 -15.19710 -14.90161 -14.44506 -14.18892 -13.86108 -13.49494 -13.23510 -12.97468 -12.77918 -12.71147 -12.43482 -12.01353 -11.90969 -11.62806 -11.36508 -11.16651 -10.17819 -10.01362 -9.19810 -8.98421 -8.54130 -6.59609 -0.26376 0.57924 0.97809 1.30101 1.35673 1.40471 1.47612 1.63905 1.87424 2.07172 2.65182 3.45841 3.80080 4.00128 4.24576 4.43999 4.59152 4.64783 4.81066 4.83389 4.94727 5.00421 5.08326 5.29372 5.32334 5.52217 5.67455 5.70375 5.98155 6.01185 6.37124 6.48691 6.65903 6.93959 7.95246 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.008845 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.241251 B = 3164.855035 C = 4224.140194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C -0.187 4.187 4 S 0.070 5.930 5 C -0.255 4.255 6 C 0.001 3.999 7 C -0.339 4.339 8 C 0.371 3.629 9 O -0.556 6.556 10 C -0.023 4.023 11 C -0.228 4.228 12 C 0.142 3.858 13 C -0.442 4.442 14 H 0.094 0.906 15 C 0.036 3.964 16 N -0.777 5.777 17 Si 0.991 3.009 18 H -0.255 1.255 19 H -0.261 1.261 20 H -0.251 1.251 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.200 0.800 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 8.466 1.155 8.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C -0.321 4.321 4 S 0.336 5.664 5 C -0.370 4.370 6 C -0.009 4.009 7 C -0.345 4.345 8 C 0.243 3.757 9 O -0.440 6.440 10 C -0.042 4.042 11 C -0.251 4.251 12 C 0.136 3.864 13 C -0.467 4.467 14 H 0.112 0.888 15 C -0.187 4.187 16 N -0.399 5.399 17 Si 0.809 3.191 18 H -0.179 1.179 19 H -0.184 1.184 20 H -0.175 1.175 21 H 0.099 0.901 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.217 0.783 25 H 0.148 0.852 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.374 8.679 1.033 8.749 hybrid contribution -0.163 -1.363 -0.049 1.374 sum -0.537 7.316 0.984 7.401 Atomic orbital electron populations 1.20917 0.87836 1.04038 1.03089 1.18911 0.98757 0.90402 1.05209 1.25429 0.95451 1.02855 1.08408 1.83443 1.06447 0.98309 1.78201 1.23058 0.96710 0.97232 1.20040 1.19284 0.91482 0.93109 0.96997 1.20868 0.95378 0.90725 1.27509 1.24396 0.90543 0.91138 0.69670 1.90397 1.82913 1.27640 1.43090 1.20575 0.93413 0.97374 0.92885 1.20542 0.94296 0.96222 1.14000 1.17363 0.92869 0.90190 0.85983 1.20196 0.91428 1.03973 1.31137 0.88837 1.27121 1.07275 0.92619 0.91655 1.69742 1.41192 1.10943 1.18005 0.85098 0.73758 0.80073 0.80180 1.17919 1.18443 1.17451 0.90063 0.88680 0.90970 0.78288 0.85161 0.88447 0.87286 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 8.53 71.23 0.61 -1.83 15 2 C -0.12 -4.08 5.81 -20.38 -0.12 -4.20 15 3 C -0.19 -5.74 10.78 66.76 0.72 -5.02 15 4 S 0.07 2.64 22.87 -56.49 -1.29 1.35 15 5 C -0.26 -12.14 6.36 23.52 0.15 -11.99 15 6 C 0.00 0.04 6.02 -20.03 -0.12 -0.08 15 7 C -0.34 -15.97 6.08 -18.36 -0.11 -16.08 15 8 C 0.37 15.38 10.60 69.93 0.74 16.12 15 9 O -0.56 -26.42 17.14 -3.36 -0.06 -26.47 15 10 C -0.02 -1.18 9.47 22.16 0.21 -0.97 15 11 C -0.23 -12.11 8.54 22.34 0.19 -11.92 15 12 C 0.14 7.40 5.58 -21.20 -0.12 7.28 15 13 C -0.44 -21.78 8.79 23.35 0.21 -21.57 15 14 H 0.09 4.37 7.75 -2.91 -0.02 4.35 15 15 C 0.04 1.62 5.10 85.41 0.44 2.05 15 16 N -0.78 -37.21 10.99 21.91 0.24 -36.97 15 17 Si 0.99 33.66 29.60 68.60 2.03 35.69 15 18 H -0.26 -8.56 7.11 99.48 0.71 -7.85 15 19 H -0.26 -8.30 7.11 99.48 0.71 -7.60 15 20 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 21 H 0.08 1.78 8.08 -2.39 -0.02 1.77 15 22 H 0.09 1.68 8.06 -2.39 -0.02 1.66 15 23 H 0.07 1.79 5.48 -2.39 -0.01 1.77 15 24 H 0.20 4.21 8.06 -2.91 -0.02 4.19 15 25 H 0.13 4.17 4.21 -2.91 -0.01 4.16 15 26 H 0.10 4.90 7.61 -2.91 -0.02 4.88 15 27 H 0.11 5.89 6.15 -2.91 -0.02 5.87 15 28 H 0.30 12.86 8.29 -92.71 -0.77 12.09 15 Total: -1.00 -61.71 257.29 4.91 -56.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.20 Total: 17.82 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 2.79 Total: -48.22 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.24 Total: -36.97 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.47 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.29 Total: 1.35 kcal Total: -61.71 4.91 -56.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.770 kcal (2) G-P(sol) polarization free energy of solvation -61.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds