Wall clock time and date at job start Mon Mar 30 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37830 * 120.05286 * 2 1 4 4 C 1.37946 * 120.61940 * 179.97438 * 3 2 1 5 5 C 1.40863 * 120.86801 * 0.02562 * 4 3 2 6 6 C 1.46601 * 129.50111 * 180.02562 * 5 4 3 7 7 C 1.41666 * 123.19728 * 359.97438 * 6 5 4 8 8 O 1.21409 * 120.00035 * 179.97438 * 7 6 5 9 9 C 1.35436 * 113.60883 * 179.24063 * 6 5 4 10 10 S 1.70009 * 111.99570 * 0.69778 * 9 6 5 11 11 C 1.38991 * 119.33691 * 359.74196 * 5 4 3 12 12 C 1.40367 * 120.05420 * 179.97438 * 2 1 3 13 13 C 1.40958 * 120.10836 * 0.02562 * 12 2 1 14 14 H 1.07997 * 119.99784 * 322.90132 * 13 12 2 15 15 C 1.39971 * 119.99930 * 142.89814 * 13 12 2 16 16 N 1.30833 * 120.00490 * 333.36411 * 15 13 12 17 17 Si 1.86802 * 119.99714 * 153.35687 * 15 13 12 18 18 H 1.48503 * 109.47104 * 270.00538 * 17 15 13 19 19 H 1.48494 * 109.47127 * 30.00087 * 17 15 13 20 20 H 1.48496 * 109.47445 * 150.00450 * 17 15 13 21 21 H 1.08998 * 109.47208 * 264.75692 * 1 2 3 22 22 H 1.09002 * 109.47363 * 24.76038 * 1 2 3 23 23 H 1.09000 * 109.47319 * 144.75288 * 1 2 3 24 24 H 1.08000 * 119.69000 * 0.02562 * 3 2 1 25 25 H 1.08006 * 119.56699 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.99518 * 359.97438 * 7 6 5 27 27 H 1.07998 * 123.99951 * 180.15743 * 9 6 5 28 28 H 0.97010 * 119.99957 * 353.15888 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1930 0.0000 4 6 3.5766 1.2066 0.0005 5 6 4.3113 0.0047 0.0005 6 6 5.7628 -0.2010 0.0016 7 6 6.6971 0.8639 0.0022 8 8 7.8878 0.6268 0.0035 9 6 6.1257 -1.5057 0.0177 10 16 4.7777 -2.5417 0.0131 11 6 3.6326 -1.2082 0.0055 12 6 2.2100 -1.2150 0.0005 13 6 1.5086 -2.4377 0.0005 14 1 0.5927 -2.5348 0.5644 15 6 1.9994 -3.5259 -0.7303 16 7 2.7499 -3.3224 -1.7824 17 14 1.5828 -5.2690 -0.2032 18 1 2.6145 -5.7591 0.7458 19 1 0.2544 -5.2813 0.4603 20 1 1.5483 -6.1521 -1.3965 21 1 -0.3633 -0.0939 1.0233 22 1 -0.3634 0.9332 -0.4304 23 1 -0.3634 -0.8392 -0.5931 24 1 1.6530 2.1259 0.0004 25 1 4.1003 2.1513 0.0009 26 1 6.3501 1.8867 0.0016 27 1 7.1501 -1.8476 0.0234 28 1 2.8852 -2.4211 -2.1147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396365534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:43 Heat of formation + Delta-G solvation = -18.357517 kcal Electronic energy + Delta-G solvation = -15090.204312 eV Core-core repulsion = 12582.522333 eV Total energy + Delta-G solvation = -2507.681979 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10105 -37.92835 -34.96778 -33.68330 -30.45280 -29.50222 -26.16511 -25.84431 -24.26470 -21.41428 -20.59582 -19.03070 -18.15253 -16.48209 -15.32356 -15.23778 -14.35331 -14.20975 -13.93766 -13.87808 -13.58145 -13.06935 -12.63150 -12.11896 -11.83353 -11.76220 -11.38412 -11.27711 -10.79623 -10.57671 -10.50115 -10.08967 -10.01532 -9.63515 -9.19779 -8.97247 -8.51693 -7.58873 -7.40817 -6.66092 -4.70799 1.15962 2.29932 2.47008 2.54556 3.04578 3.07826 3.10939 3.24627 3.66982 3.87934 4.37411 5.05361 5.09860 5.34077 5.80631 5.92911 6.07372 6.15263 6.30469 6.43844 6.49775 6.55471 6.71397 6.89152 7.13521 7.22272 7.42399 7.56588 7.67605 7.83358 7.94669 8.03683 8.45545 8.56494 9.81817 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.010805 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.688180 B = 2590.840860 C = 3681.969441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 C -0.063 4.063 4 C -0.221 4.221 5 C -0.009 4.009 6 C -0.232 4.232 7 C 0.404 3.596 8 O -0.498 6.498 9 C -0.178 4.178 10 S 0.224 5.776 11 C -0.241 4.241 12 C 0.139 3.861 13 C -0.523 4.523 14 H 0.086 0.914 15 C 0.033 3.967 16 N -0.772 5.772 17 Si 1.055 2.945 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.273 1.273 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.160 0.840 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 1.215 2.114 2.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.200 4.200 3 C -0.082 4.082 4 C -0.243 4.243 5 C -0.014 4.014 6 C -0.250 4.250 7 C 0.265 3.735 8 O -0.377 6.377 9 C -0.317 4.317 10 S 0.496 5.504 11 C -0.357 4.357 12 C 0.133 3.867 13 C -0.551 4.551 14 H 0.104 0.896 15 C -0.190 4.190 16 N -0.395 5.395 17 Si 0.878 3.122 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.198 1.198 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.177 0.823 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.063 -2.136 1.719 2.743 hybrid contribution -0.143 3.339 0.278 3.353 sum -0.080 1.203 1.998 2.334 Atomic orbital electron populations 1.20343 0.92658 1.00475 1.00155 1.19618 0.94704 0.92125 1.13520 1.20366 0.93393 0.96373 0.98107 1.20010 0.93265 0.94340 1.16650 1.18647 0.89667 0.93784 0.99340 1.19736 0.94402 0.94893 1.15988 1.22016 0.87362 0.93908 0.70165 1.90475 1.19781 1.88902 1.38573 1.25993 1.06102 0.99200 1.00404 1.83163 0.91134 1.07058 1.69053 1.22812 0.97911 0.94452 1.20489 1.16842 0.87552 0.93139 0.89186 1.20469 1.10566 0.95598 1.28429 0.89616 1.26997 0.92560 1.06312 0.93085 1.70434 1.25023 1.28547 1.15489 0.83734 0.77826 0.73270 0.77349 1.19419 1.19864 1.19828 0.93760 0.94102 0.92003 0.88313 0.88371 0.89607 0.82276 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.32 36.00 0.34 -1.18 15 2 C -0.20 -4.33 5.93 -103.97 -0.62 -4.95 15 3 C -0.06 -1.30 9.61 -39.84 -0.38 -1.68 15 4 C -0.22 -4.56 9.85 -38.70 -0.38 -4.94 15 5 C -0.01 -0.20 6.02 -105.25 -0.63 -0.83 15 6 C -0.23 -4.79 5.83 -106.22 -0.62 -5.41 15 7 C 0.40 7.49 11.20 32.04 0.36 7.85 15 8 O -0.50 -10.25 17.36 5.45 0.09 -10.16 15 9 C -0.18 -3.60 10.32 29.73 0.31 -3.29 15 10 S 0.22 4.84 19.65 -107.50 -2.11 2.72 15 11 C -0.24 -5.72 5.32 -37.76 -0.20 -5.92 15 12 C 0.14 3.36 4.99 -106.52 -0.53 2.83 15 13 C -0.52 -12.56 7.67 -37.90 -0.29 -12.85 15 14 H 0.09 2.02 7.52 -52.49 -0.39 1.63 15 15 C 0.03 0.77 4.02 -17.33 -0.07 0.70 15 16 N -0.77 -18.82 11.46 55.55 0.64 -18.19 15 17 Si 1.06 20.19 30.01 -169.99 -5.10 15.09 15 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 15 21 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.04 0.68 8.05 -51.93 -0.42 0.26 15 23 H 0.06 1.22 7.23 -51.93 -0.38 0.85 15 24 H 0.10 1.73 8.06 -52.49 -0.42 1.31 15 25 H 0.10 1.74 7.57 -52.48 -0.40 1.34 15 26 H 0.09 1.33 7.54 -52.48 -0.40 0.93 15 27 H 0.16 2.90 7.91 -52.49 -0.42 2.48 15 28 H 0.30 7.64 7.30 -40.82 -0.30 7.34 15 LS Contribution 259.21 15.07 3.91 3.91 Total: -1.00 -26.11 259.21 -7.64 -33.75 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -2.34 Total: 2.56 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: -2.73 Total: -29.67 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.64 Total: -18.19 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.10 Total: 15.09 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.11 Total: 2.72 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.11 -7.64 -33.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -26.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds