Wall clock time and date at job start Mon Mar 30 2020 05:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37830 * 120.05286 * 2 1 4 4 C 1.37946 * 120.61940 * 179.97438 * 3 2 1 5 5 C 1.40863 * 120.86801 * 0.02562 * 4 3 2 6 6 C 1.46601 * 129.50111 * 180.02562 * 5 4 3 7 7 C 1.41666 * 123.19728 * 359.97438 * 6 5 4 8 8 O 1.21409 * 120.00035 * 179.97438 * 7 6 5 9 9 C 1.35436 * 113.60883 * 179.24063 * 6 5 4 10 10 S 1.70009 * 111.99570 * 0.69778 * 9 6 5 11 11 C 1.38991 * 119.33691 * 359.74196 * 5 4 3 12 12 C 1.40367 * 120.05420 * 179.97438 * 2 1 3 13 13 C 1.40958 * 120.10836 * 0.02562 * 12 2 1 14 14 H 1.07997 * 119.99784 * 322.90132 * 13 12 2 15 15 C 1.39971 * 119.99930 * 142.89814 * 13 12 2 16 16 N 1.30833 * 120.00490 * 333.36411 * 15 13 12 17 17 Si 1.86802 * 119.99714 * 153.35687 * 15 13 12 18 18 H 1.48503 * 109.47104 * 270.00538 * 17 15 13 19 19 H 1.48494 * 109.47127 * 30.00087 * 17 15 13 20 20 H 1.48496 * 109.47445 * 150.00450 * 17 15 13 21 21 H 1.08998 * 109.47208 * 264.75692 * 1 2 3 22 22 H 1.09002 * 109.47363 * 24.76038 * 1 2 3 23 23 H 1.09000 * 109.47319 * 144.75288 * 1 2 3 24 24 H 1.08000 * 119.69000 * 0.02562 * 3 2 1 25 25 H 1.08006 * 119.56699 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.99518 * 359.97438 * 7 6 5 27 27 H 1.07998 * 123.99951 * 180.15743 * 9 6 5 28 28 H 0.97010 * 119.99957 * 353.15888 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1930 0.0000 4 6 3.5766 1.2066 0.0005 5 6 4.3113 0.0047 0.0005 6 6 5.7628 -0.2010 0.0016 7 6 6.6971 0.8639 0.0022 8 8 7.8878 0.6268 0.0035 9 6 6.1257 -1.5057 0.0177 10 16 4.7777 -2.5417 0.0131 11 6 3.6326 -1.2082 0.0055 12 6 2.2100 -1.2150 0.0005 13 6 1.5086 -2.4377 0.0005 14 1 0.5927 -2.5348 0.5644 15 6 1.9994 -3.5259 -0.7303 16 7 2.7499 -3.3224 -1.7824 17 14 1.5828 -5.2690 -0.2032 18 1 2.6145 -5.7591 0.7458 19 1 0.2544 -5.2813 0.4603 20 1 1.5483 -6.1521 -1.3965 21 1 -0.3633 -0.0939 1.0233 22 1 -0.3634 0.9332 -0.4304 23 1 -0.3634 -0.8392 -0.5931 24 1 1.6530 2.1259 0.0004 25 1 4.1003 2.1513 0.0009 26 1 6.3501 1.8867 0.0016 27 1 7.1501 -1.8476 0.0234 28 1 2.8852 -2.4211 -2.1147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396365534.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:43 Heat of formation + Delta-G solvation = -30.793717 kcal Electronic energy + Delta-G solvation = -15090.743586 eV Core-core repulsion = 12582.522333 eV Total energy + Delta-G solvation = -2508.221253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68909 -39.54275 -36.62029 -35.35339 -32.07083 -31.17537 -27.82748 -27.42270 -25.90697 -23.07932 -22.21356 -20.64068 -19.79435 -18.13433 -16.88826 -16.86005 -15.94842 -15.85284 -15.50546 -15.43858 -15.18819 -14.70999 -14.25278 -13.73236 -13.48139 -13.36788 -12.94216 -12.84293 -12.36417 -12.16539 -11.99541 -11.74988 -11.63015 -11.26729 -10.78226 -10.63443 -10.21188 -9.34254 -9.10656 -8.35252 -6.49407 -0.41731 0.64226 0.82793 0.88158 1.39252 1.51084 1.58330 1.75490 2.10040 2.30603 2.68053 3.34619 3.70681 3.74739 4.24447 4.40151 4.48715 4.61276 4.75986 4.89739 4.98668 5.00336 5.14540 5.20542 5.45714 5.58206 5.72159 5.81091 5.95027 6.10912 6.30882 6.52151 6.72671 6.83552 8.00175 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.010805 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.688180 B = 2590.840860 C = 3681.969441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.210 4.210 3 C -0.070 4.070 4 C -0.212 4.212 5 C -0.029 4.029 6 C -0.237 4.237 7 C 0.412 3.588 8 O -0.518 6.518 9 C -0.178 4.178 10 S 0.207 5.793 11 C -0.266 4.266 12 C 0.107 3.893 13 C -0.549 4.549 14 H 0.079 0.921 15 C 0.008 3.992 16 N -0.792 5.792 17 Si 1.092 2.908 18 H -0.261 1.261 19 H -0.260 1.260 20 H -0.271 1.271 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.045 0.955 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.177 0.823 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 2.710 2.580 3.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.214 4.214 3 C -0.089 4.089 4 C -0.233 4.233 5 C -0.035 4.035 6 C -0.255 4.255 7 C 0.275 3.725 8 O -0.398 6.398 9 C -0.316 4.316 10 S 0.478 5.522 11 C -0.382 4.382 12 C 0.101 3.899 13 C -0.577 4.577 14 H 0.097 0.903 15 C -0.210 4.210 16 N -0.415 5.415 17 Si 0.910 3.090 18 H -0.186 1.186 19 H -0.184 1.184 20 H -0.196 1.196 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.153 0.847 25 H 0.152 0.848 26 H 0.148 0.852 27 H 0.195 0.805 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.176 -0.621 2.192 2.285 hybrid contribution -0.159 3.061 0.161 3.069 sum 0.017 2.440 2.353 3.390 Atomic orbital electron populations 1.20327 0.90920 1.01243 1.00637 1.20136 0.96376 0.92318 1.12612 1.20783 0.93730 0.97171 0.97194 1.20533 0.93644 0.95211 1.13912 1.19024 0.90544 0.94040 0.99907 1.20031 0.94242 0.95722 1.15526 1.22440 0.86397 0.94899 0.68783 1.90479 1.20606 1.89304 1.39408 1.26190 1.06348 0.99111 0.99985 1.83092 0.91701 1.07550 1.69884 1.23118 0.98284 0.95705 1.21054 1.17236 0.88300 0.94157 0.90167 1.20518 1.10943 0.96603 1.29625 0.90319 1.27997 0.91727 1.08986 0.92287 1.70550 1.27205 1.27009 1.16692 0.83302 0.78501 0.69875 0.77353 1.18559 1.18394 1.19577 0.92884 0.91388 0.93552 0.84745 0.84758 0.85190 0.80540 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.75 9.32 71.24 0.66 -2.09 15 2 C -0.21 -9.12 5.93 -19.44 -0.12 -9.23 15 3 C -0.07 -2.67 9.61 22.10 0.21 -2.45 15 4 C -0.21 -8.07 9.85 22.84 0.23 -7.85 15 5 C -0.03 -1.26 6.02 -20.27 -0.12 -1.39 15 6 C -0.24 -9.37 5.83 -20.90 -0.12 -9.50 15 7 C 0.41 14.00 11.20 68.67 0.77 14.77 15 8 O -0.52 -20.00 17.36 -3.43 -0.06 -20.06 15 9 C -0.18 -7.05 10.32 67.17 0.69 -6.35 15 10 S 0.21 9.02 19.65 -56.49 -1.11 7.91 15 11 C -0.27 -12.68 5.32 23.45 0.12 -12.55 15 12 C 0.11 5.24 4.99 -21.09 -0.11 5.13 15 13 C -0.55 -27.01 7.67 23.36 0.18 -26.83 15 14 H 0.08 3.83 7.52 -2.91 -0.02 3.81 15 15 C 0.01 0.36 4.02 85.26 0.34 0.71 15 16 N -0.79 -39.72 11.46 21.83 0.25 -39.47 15 17 Si 1.09 40.99 30.01 68.60 2.06 43.05 15 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.07 2.09 8.05 -2.39 -0.02 2.07 15 23 H 0.05 1.83 7.23 -2.39 -0.02 1.81 15 24 H 0.13 4.11 8.06 -2.91 -0.02 4.09 15 25 H 0.13 4.07 7.57 -2.91 -0.02 4.05 15 26 H 0.13 3.36 7.54 -2.91 -0.02 3.33 15 27 H 0.18 6.24 7.91 -2.91 -0.02 6.21 15 28 H 0.28 14.90 7.30 -92.70 -0.68 14.22 15 Total: -1.00 -56.25 259.21 5.16 -51.08 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.28 Total: 15.13 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 2.75 Total: -57.64 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.25 Total: -39.47 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.06 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.06 Total: 43.05 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -1.11 Total: 7.91 kcal Total: -56.25 5.16 -51.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365534.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.290 kcal (2) G-P(sol) polarization free energy of solvation -56.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds