Wall clock time and date at job start Mon Mar 30 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32853 * 124.62975 * 2 1 4 4 C 1.39808 * 115.90097 * 180.02562 * 3 2 1 5 5 C 1.40358 * 112.55577 * 0.02562 * 4 3 2 6 6 C 1.38688 * 120.28549 * 180.02562 * 5 4 3 7 7 C 1.40332 * 121.08346 * 359.95447 * 6 5 4 8 8 C 1.41133 * 119.78573 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99881 * 25.20470 * 8 7 6 10 10 C 1.39870 * 120.00453 * 205.20579 * 8 7 6 11 11 N 1.30892 * 119.99613 * 18.13182 * 10 8 7 12 12 Si 1.86792 * 120.00493 * 198.13256 * 10 8 7 13 13 H 1.48508 * 109.46783 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47570 * 119.99538 * 12 10 8 15 15 H 1.48496 * 109.47563 * 240.00146 * 12 10 8 16 16 C 1.40653 * 120.42936 * 0.04461 * 7 6 5 17 17 C 1.38380 * 120.01567 * 359.97438 * 16 7 6 18 18 C 1.46706 * 120.15984 * 180.02562 * 17 16 7 19 19 O 1.21320 * 119.99929 * 179.97438 * 18 17 16 20 20 S 1.75496 * 124.62950 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46733 * 90.00325 * 1 2 3 22 22 H 1.08994 * 109.47090 * 209.99993 * 1 2 3 23 23 H 1.09001 * 109.47152 * 330.00518 * 1 2 3 24 24 H 1.07997 * 122.04867 * 359.76403 * 3 2 1 25 25 H 1.08000 * 119.46175 * 179.97438 * 6 5 4 26 26 H 0.97006 * 119.99954 * 180.02562 * 11 10 8 27 27 H 1.08008 * 119.99169 * 179.97438 * 16 7 6 28 28 H 1.07992 * 120.00042 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2620 1.0932 0.0000 4 6 3.6439 0.8810 -0.0006 5 6 3.9793 -0.4819 -0.0016 6 6 5.3094 -0.8748 -0.0017 7 6 6.3447 0.0725 -0.0018 8 6 7.6888 -0.3579 -0.0014 9 1 7.9451 -1.3287 -0.3994 10 6 8.6890 0.4726 0.5144 11 7 8.3712 1.4670 1.3040 12 14 10.4783 0.1629 0.0765 13 1 10.5707 -1.0138 -0.8248 14 1 11.0341 1.3571 -0.6092 15 1 11.2526 -0.1015 1.3157 16 6 6.0516 1.4481 -0.0008 17 6 4.7354 1.8754 -0.0002 18 6 4.4260 3.3095 0.0003 19 8 3.2711 3.6809 0.0003 20 16 2.5043 -1.4441 -0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.8344 2.0849 -0.0038 25 1 5.5524 -1.9271 -0.0021 26 1 9.0648 2.0433 1.6615 27 1 6.8540 2.1711 -0.0004 28 1 5.2264 4.0345 0.0006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396365620.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:59 Heat of formation + Delta-G solvation = -10.246593 kcal Electronic energy + Delta-G solvation = -14706.672938 eV Core-core repulsion = 12199.342675 eV Total energy + Delta-G solvation = -2507.330263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83893 -37.27367 -35.47095 -33.34557 -30.38034 -30.35974 -27.36074 -24.54865 -23.25140 -22.32085 -19.94427 -19.13060 -17.65733 -16.26558 -15.67354 -15.20882 -14.64727 -14.06511 -13.79984 -13.63047 -13.37485 -13.20965 -12.51279 -12.38304 -11.99342 -11.87947 -11.57431 -11.29351 -11.00390 -10.82529 -10.44767 -10.25948 -9.94928 -9.80335 -9.28521 -8.85160 -8.53138 -7.38433 -7.23069 -6.84549 -4.63273 1.31178 2.18510 2.52669 2.77011 2.89501 2.93577 2.95807 3.27725 3.45523 3.66507 4.33906 5.04148 5.25139 5.50595 5.75109 5.91376 5.93237 6.15654 6.25825 6.38606 6.54477 6.59507 6.78158 6.90228 6.97191 7.05345 7.41996 7.53397 7.61659 7.71033 8.10547 8.18195 8.40813 8.48306 9.75512 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.030901 B = 0.007120 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.891617 B = 3931.539918 C = 4748.784955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.237 4.237 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.071 4.071 6 C -0.201 4.201 7 C 0.110 3.890 8 C -0.435 4.435 9 H 0.089 0.911 10 C 0.071 3.929 11 N -0.782 5.782 12 Si 0.917 3.083 13 H -0.257 1.257 14 H -0.268 1.268 15 H -0.271 1.271 16 C -0.059 4.059 17 C -0.157 4.157 18 C 0.386 3.614 19 O -0.484 6.484 20 S 0.006 5.994 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.137 0.863 25 H 0.101 0.899 26 H 0.289 0.711 27 H 0.136 0.864 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 0.027 -1.614 2.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.351 4.351 3 C -0.104 4.104 4 C -0.160 4.160 5 C -0.186 4.186 6 C -0.227 4.227 7 C 0.105 3.895 8 C -0.463 4.463 9 H 0.107 0.893 10 C -0.149 4.149 11 N -0.406 5.406 12 Si 0.741 3.259 13 H -0.180 1.180 14 H -0.193 1.193 15 H -0.196 1.196 16 C -0.079 4.079 17 C -0.160 4.160 18 C 0.248 3.752 19 O -0.360 6.360 20 S 0.267 5.733 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.153 0.847 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.023 -1.091 -1.458 3.529 hybrid contribution 1.354 1.244 -0.004 1.839 sum -1.669 0.153 -1.462 2.224 Atomic orbital electron populations 1.20105 0.89199 1.01751 1.01329 1.23516 0.98535 0.95100 1.17983 1.19897 0.92372 0.98722 0.99405 1.18527 0.91799 0.91245 1.14477 1.22195 0.96315 0.95094 1.05012 1.20200 0.88931 0.98324 1.15270 1.17342 0.92759 0.90734 0.88713 1.19749 0.90713 1.02958 1.32923 0.89298 1.26064 1.02728 0.93715 0.92354 1.69794 1.36974 1.13551 1.20302 0.86088 0.80219 0.80019 0.79617 1.18024 1.19260 1.19602 1.21802 0.93610 0.97125 0.95346 1.21399 0.93209 0.93408 1.08023 1.23933 0.90995 0.90661 0.69579 1.90383 1.25178 1.83484 1.36994 1.83520 0.97403 1.10229 1.82110 0.92185 0.92432 0.91671 0.84565 0.88097 0.89973 0.84651 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.99 10.34 36.01 0.37 -0.62 15 2 C -0.24 -4.67 6.44 -36.16 -0.23 -4.90 15 3 C -0.07 -1.63 9.28 -40.85 -0.38 -2.01 15 4 C -0.15 -3.63 6.03 -104.67 -0.63 -4.26 15 5 C -0.07 -1.67 6.46 -38.62 -0.25 -1.92 15 6 C -0.20 -4.79 9.72 -38.63 -0.38 -5.16 15 7 C 0.11 2.67 5.55 -107.10 -0.59 2.08 15 8 C -0.43 -10.17 9.00 -37.87 -0.34 -10.52 15 9 H 0.09 2.00 7.91 -52.48 -0.42 1.58 15 10 C 0.07 1.56 5.11 -17.34 -0.09 1.47 15 11 N -0.78 -17.46 10.98 55.54 0.61 -16.85 15 12 Si 0.92 16.32 29.60 -169.99 -5.03 11.29 15 13 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 14 H -0.27 -4.67 7.11 56.52 0.40 -4.27 15 15 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 16 C -0.06 -1.37 8.35 -38.62 -0.32 -1.69 15 17 C -0.16 -3.52 6.06 -102.58 -0.62 -4.14 15 18 C 0.39 7.56 11.43 34.15 0.39 7.95 15 19 O -0.48 -10.36 15.23 5.52 0.08 -10.28 15 20 S 0.01 0.12 23.27 -107.50 -2.50 -2.38 15 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.14 2.93 6.21 -52.49 -0.33 2.60 15 25 H 0.10 2.28 8.06 -52.49 -0.42 1.86 15 26 H 0.29 5.77 8.30 -40.82 -0.34 5.43 15 27 H 0.14 3.00 6.16 -52.48 -0.32 2.67 15 28 H 0.09 1.42 8.06 -52.49 -0.42 0.99 15 LS Contribution 263.28 15.07 3.97 3.97 Total: -1.00 -26.15 263.28 -8.26 -34.41 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -2.31 Total: 3.56 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -3.07 Total: -23.72 kcal Atomic # 7 Polarization: -17.46 SS G_CDS: 0.61 Total: -16.85 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.29 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.50 Total: -2.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.15 -8.26 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365620.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.160 kcal (2) G-P(sol) polarization free energy of solvation -26.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds