Wall clock time and date at job start Mon Mar 30 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35756 * 119.58413 * 2 1 4 4 C 1.41062 * 120.10995 * 179.97438 * 3 2 1 5 5 C 1.41235 * 120.13336 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00149 * 204.58334 * 5 4 3 7 7 C 1.39900 * 119.99964 * 24.58967 * 5 4 3 8 8 N 1.30868 * 119.99870 * 17.91435 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 197.91735 * 7 5 4 10 10 H 1.48506 * 109.47215 * 94.68780 * 9 7 5 11 11 H 1.48499 * 109.47060 * 214.68623 * 9 7 5 12 12 H 1.48503 * 109.47160 * 334.69129 * 9 7 5 13 13 C 1.40128 * 119.73525 * 0.02562 * 4 3 2 14 14 C 1.39913 * 119.95144 * 359.97438 * 13 4 3 15 15 C 1.46689 * 129.51482 * 180.02562 * 14 13 4 16 16 C 1.41576 * 123.19448 * 359.96311 * 15 14 13 17 17 O 1.21421 * 119.99780 * 359.97438 * 16 15 14 18 18 C 1.35346 * 113.61062 * 179.97438 * 15 14 13 19 19 S 1.69958 * 112.18730 * 0.02562 * 18 15 14 20 20 C 1.39845 * 119.39281 * 0.02562 * 14 13 4 21 21 H 1.09001 * 109.47207 * 90.00186 * 1 2 3 22 22 H 1.09004 * 109.47116 * 209.99563 * 1 2 3 23 23 H 1.09000 * 109.47468 * 330.00166 * 1 2 3 24 24 H 1.08005 * 119.94544 * 359.70195 * 3 2 1 25 25 H 0.97002 * 119.99831 * 180.02562 * 8 7 5 26 26 H 1.08002 * 120.02223 * 180.02562 * 13 4 3 27 27 H 1.08004 * 120.00020 * 179.97438 * 16 15 14 28 28 H 1.08004 * 123.90160 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1772 1.1806 0.0000 4 6 3.5877 1.1935 0.0005 5 6 4.2855 2.4215 0.0000 6 1 5.2919 2.4705 -0.3887 7 6 3.6730 3.5743 0.5031 8 7 2.6248 3.4724 1.2800 9 14 4.3515 5.2589 0.0661 10 1 3.6161 5.8001 -1.1052 11 1 4.1836 6.1754 1.2224 12 1 5.7939 5.1406 -0.2667 13 6 4.2939 -0.0168 0.0005 14 6 3.5988 -1.2311 0.0005 15 6 4.1173 -2.6033 0.0010 16 6 5.4995 -2.9096 0.0009 17 8 6.3197 -2.0144 -0.0002 18 6 3.1487 -3.5487 0.0014 19 16 1.5902 -2.8709 0.0005 20 6 2.2004 -1.2215 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6295 2.1115 -0.0049 25 1 2.1999 4.2717 1.6285 26 1 5.3739 -0.0123 0.0014 27 1 5.8243 -3.9397 0.0017 28 1 3.3438 -4.6110 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396365674.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:16 Heat of formation + Delta-G solvation = -9.968248 kcal Electronic energy + Delta-G solvation = -14854.393034 eV Core-core repulsion = 12347.074841 eV Total energy + Delta-G solvation = -2507.318193 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06490 -37.58221 -34.88700 -33.52810 -31.28518 -28.83952 -26.07659 -25.82088 -24.40248 -21.76312 -20.40185 -18.78491 -17.08614 -16.68829 -15.75553 -15.21609 -14.84867 -13.87857 -13.77645 -13.73287 -13.39031 -13.01352 -12.33863 -11.94933 -11.81551 -11.74799 -11.45804 -11.32903 -11.15638 -10.74974 -10.36486 -10.19706 -9.96520 -9.50117 -9.20393 -8.97892 -8.35382 -7.43115 -7.00272 -6.72121 -4.45339 1.08023 2.30321 2.47225 2.75949 2.82221 3.02198 3.06039 3.07710 3.75648 3.85870 4.44924 4.89609 5.23175 5.49638 5.87881 5.91032 6.00342 6.21543 6.25608 6.30050 6.51396 6.72672 6.91191 7.02717 7.16479 7.45469 7.55259 7.73826 7.92795 8.04803 8.14508 8.46063 8.74816 8.80195 10.04010 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.008036 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.491828 B = 3483.367084 C = 4474.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.051 4.051 3 C -0.121 4.121 4 C 0.116 3.884 5 C -0.449 4.449 6 H 0.084 0.916 7 C 0.075 3.925 8 N -0.789 5.789 9 Si 0.912 3.088 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.260 1.260 13 C -0.209 4.209 14 C -0.007 4.007 15 C -0.204 4.204 16 C 0.389 3.611 17 O -0.462 6.462 18 C -0.180 4.180 19 S 0.120 5.880 20 C -0.254 4.254 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.128 0.872 25 H 0.283 0.717 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -7.518 -1.669 8.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.142 4.142 4 C 0.113 3.887 5 C -0.478 4.478 6 H 0.102 0.898 7 C -0.144 4.144 8 N -0.413 5.413 9 Si 0.736 3.264 10 H -0.192 1.192 11 H -0.201 1.201 12 H -0.183 1.183 13 C -0.232 4.232 14 C -0.012 4.012 15 C -0.223 4.223 16 C 0.248 3.752 17 O -0.338 6.338 18 C -0.318 4.318 19 S 0.387 5.613 20 C -0.368 4.368 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.379 -7.553 -1.515 8.861 hybrid contribution 1.572 1.121 -0.026 1.930 sum -2.807 -6.433 -1.541 7.186 Atomic orbital electron populations 1.20713 0.93166 1.01455 1.00940 1.18634 0.93868 0.91001 1.01950 1.21002 0.94777 0.95798 1.02655 1.17552 0.91682 0.92302 0.87177 1.19651 1.01448 0.91923 1.34778 0.89827 1.25983 0.94154 1.01814 0.92407 1.69830 1.17861 1.32002 1.21657 0.86219 0.80674 0.80442 0.79020 1.19176 1.20145 1.18321 1.20933 0.98747 0.89499 1.13984 1.18532 0.91145 0.91504 0.99993 1.19990 0.96519 0.93489 1.12293 1.22069 0.87325 0.93700 0.72102 1.90532 1.56205 1.51651 1.35449 1.25233 0.99058 1.02883 1.04619 1.82099 1.05112 0.99159 1.74944 1.21877 0.95809 0.94604 1.24542 0.92431 0.93104 0.91840 0.85431 0.90572 0.86797 0.89993 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.85 36.00 0.35 -1.58 15 2 C -0.05 -1.15 5.87 -104.68 -0.61 -1.77 15 3 C -0.12 -3.07 8.21 -39.40 -0.32 -3.39 15 4 C 0.12 3.12 5.56 -106.98 -0.59 2.53 15 5 C -0.45 -11.89 9.03 -37.82 -0.34 -12.23 15 6 H 0.08 2.17 7.91 -52.48 -0.41 1.75 15 7 C 0.08 1.84 5.13 -17.34 -0.09 1.75 15 8 N -0.79 -19.72 10.96 55.55 0.61 -19.11 15 9 Si 0.91 18.33 29.60 -169.99 -5.03 13.30 15 10 H -0.27 -5.26 7.11 56.52 0.40 -4.85 15 11 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 12 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 13 C -0.21 -5.49 9.29 -38.25 -0.36 -5.85 15 14 C -0.01 -0.17 6.01 -105.26 -0.63 -0.81 15 15 C -0.20 -3.98 5.82 -106.24 -0.62 -4.60 15 16 C 0.39 6.90 11.28 32.00 0.36 7.26 15 17 O -0.46 -10.10 15.55 5.43 0.08 -10.02 15 18 C -0.18 -2.88 10.62 29.70 0.32 -2.56 15 19 S 0.12 2.04 22.22 -107.50 -2.39 -0.35 15 20 C -0.25 -5.67 6.31 -38.15 -0.24 -5.91 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.05 0.85 7.56 -51.93 -0.39 0.46 15 23 H 0.06 1.12 8.07 -51.93 -0.42 0.71 15 24 H 0.13 3.25 6.16 -52.48 -0.32 2.92 15 25 H 0.28 6.39 8.30 -40.82 -0.34 6.05 15 26 H 0.11 3.06 6.38 -52.49 -0.33 2.73 15 27 H 0.08 1.02 8.06 -52.48 -0.42 0.60 15 28 H 0.16 1.82 8.06 -52.48 -0.42 1.40 15 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -29.09 261.25 -7.86 -36.94 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.29 Total: 2.46 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.78 Total: -27.16 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.61 Total: -19.11 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.39 Total: -0.35 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.09 -7.86 -36.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365674.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.974 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds