Wall clock time and date at job start Mon Mar 30 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35756 * 119.58413 * 2 1 4 4 C 1.41062 * 120.10995 * 179.97438 * 3 2 1 5 5 C 1.41235 * 120.13336 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00149 * 204.58334 * 5 4 3 7 7 C 1.39900 * 119.99964 * 24.58967 * 5 4 3 8 8 N 1.30868 * 119.99870 * 17.91435 * 7 5 4 9 9 Si 1.86800 * 120.00013 * 197.91735 * 7 5 4 10 10 H 1.48506 * 109.47215 * 94.68780 * 9 7 5 11 11 H 1.48499 * 109.47060 * 214.68623 * 9 7 5 12 12 H 1.48503 * 109.47160 * 334.69129 * 9 7 5 13 13 C 1.40128 * 119.73525 * 0.02562 * 4 3 2 14 14 C 1.39913 * 119.95144 * 359.97438 * 13 4 3 15 15 C 1.46689 * 129.51482 * 180.02562 * 14 13 4 16 16 C 1.41576 * 123.19448 * 359.96311 * 15 14 13 17 17 O 1.21421 * 119.99780 * 359.97438 * 16 15 14 18 18 C 1.35346 * 113.61062 * 179.97438 * 15 14 13 19 19 S 1.69958 * 112.18730 * 0.02562 * 18 15 14 20 20 C 1.39845 * 119.39281 * 0.02562 * 14 13 4 21 21 H 1.09001 * 109.47207 * 90.00186 * 1 2 3 22 22 H 1.09004 * 109.47116 * 209.99563 * 1 2 3 23 23 H 1.09000 * 109.47468 * 330.00166 * 1 2 3 24 24 H 1.08005 * 119.94544 * 359.70195 * 3 2 1 25 25 H 0.97002 * 119.99831 * 180.02562 * 8 7 5 26 26 H 1.08002 * 120.02223 * 180.02562 * 13 4 3 27 27 H 1.08004 * 120.00020 * 179.97438 * 16 15 14 28 28 H 1.08004 * 123.90160 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1772 1.1806 0.0000 4 6 3.5877 1.1935 0.0005 5 6 4.2855 2.4215 0.0000 6 1 5.2919 2.4705 -0.3887 7 6 3.6730 3.5743 0.5031 8 7 2.6248 3.4724 1.2800 9 14 4.3515 5.2589 0.0661 10 1 3.6161 5.8001 -1.1052 11 1 4.1836 6.1754 1.2224 12 1 5.7939 5.1406 -0.2667 13 6 4.2939 -0.0168 0.0005 14 6 3.5988 -1.2311 0.0005 15 6 4.1173 -2.6033 0.0010 16 6 5.4995 -2.9096 0.0009 17 8 6.3197 -2.0144 -0.0002 18 6 3.1487 -3.5487 0.0014 19 16 1.5902 -2.8709 0.0005 20 6 2.2004 -1.2215 0.0000 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6295 2.1115 -0.0049 25 1 2.1999 4.2717 1.6285 26 1 5.3739 -0.0123 0.0014 27 1 5.8243 -3.9397 0.0017 28 1 3.3438 -4.6110 0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396365674.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:16 Heat of formation + Delta-G solvation = -26.961104 kcal Electronic energy + Delta-G solvation = -14855.129899 eV Core-core repulsion = 12347.074841 eV Total energy + Delta-G solvation = -2508.055059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62232 -39.23654 -36.56332 -35.25628 -33.06855 -30.54607 -27.75510 -27.57820 -25.91156 -23.44942 -22.16811 -20.34110 -18.89136 -18.27044 -17.26588 -16.93651 -16.49528 -15.43382 -15.41405 -15.32564 -15.03958 -14.57534 -13.95484 -13.66854 -13.36642 -13.35573 -13.13059 -12.92515 -12.77480 -12.43342 -12.05743 -11.92683 -11.67486 -11.21865 -10.98277 -10.47058 -10.00290 -9.20921 -8.81017 -8.38390 -6.41498 -0.31816 0.69805 0.86015 1.01669 1.23175 1.34347 1.42700 1.48656 2.16485 2.23457 2.63078 3.57765 3.66152 3.99859 4.23408 4.42861 4.61825 4.70031 4.82083 4.88846 4.94496 4.97877 5.09465 5.16088 5.40875 5.63777 5.73448 5.86421 6.02003 6.25725 6.52931 6.75481 6.84492 6.89241 8.22607 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.008036 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.491828 B = 3483.367084 C = 4474.705021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.051 4.051 3 C -0.153 4.153 4 C 0.089 3.911 5 C -0.495 4.495 6 H 0.068 0.932 7 C 0.040 3.960 8 N -0.816 5.816 9 Si 0.986 3.014 10 H -0.256 1.256 11 H -0.261 1.261 12 H -0.264 1.264 13 C -0.250 4.250 14 C -0.024 4.024 15 C -0.255 4.255 16 C 0.394 3.606 17 O -0.522 6.522 18 C -0.135 4.135 19 S 0.205 5.795 20 C -0.289 4.289 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.117 0.883 25 H 0.293 0.707 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -10.407 -1.799 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.055 4.055 3 C -0.174 4.174 4 C 0.086 3.914 5 C -0.524 4.524 6 H 0.086 0.914 7 C -0.176 4.176 8 N -0.441 5.441 9 Si 0.806 3.194 10 H -0.180 1.180 11 H -0.186 1.186 12 H -0.188 1.188 13 C -0.273 4.273 14 C -0.029 4.029 15 C -0.272 4.272 16 C 0.256 3.744 17 O -0.401 6.401 18 C -0.273 4.273 19 S 0.472 5.528 20 C -0.403 4.403 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.134 0.866 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.171 0.829 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.219 -10.466 -1.641 12.285 hybrid contribution 1.991 1.695 0.021 2.615 sum -4.228 -8.772 -1.621 9.872 Atomic orbital electron populations 1.20743 0.89804 1.02601 1.02589 1.19138 0.96360 0.90630 0.99335 1.20932 0.94101 0.96712 1.05624 1.17904 0.92979 0.92785 0.87730 1.19802 1.01490 0.93631 1.37430 0.91408 1.26774 0.94313 1.05015 0.91528 1.69857 1.18771 1.33525 1.21970 0.85142 0.79516 0.75414 0.79343 1.18014 1.18553 1.18846 1.20887 0.97717 0.91285 1.17404 1.19055 0.92350 0.92955 0.98516 1.20172 0.98695 0.91911 1.16463 1.22968 0.86104 0.95779 0.69533 1.90538 1.57256 1.53862 1.38481 1.25996 0.97645 1.05320 0.98306 1.81804 1.04336 0.93529 1.73131 1.22442 0.95971 0.98208 1.23642 0.90348 0.90893 0.91729 0.86563 0.89579 0.89478 0.82912 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.51 9.85 71.23 0.70 -2.81 15 2 C -0.05 -2.35 5.87 -19.90 -0.12 -2.46 15 3 C -0.15 -8.17 8.21 22.39 0.18 -7.99 15 4 C 0.09 5.20 5.56 -21.39 -0.12 5.08 15 5 C -0.49 -28.57 9.03 23.41 0.21 -28.36 15 6 H 0.07 3.92 7.91 -2.91 -0.02 3.90 15 7 C 0.04 2.06 5.13 85.24 0.44 2.50 15 8 N -0.82 -42.75 10.96 21.82 0.24 -42.51 15 9 Si 0.99 39.19 29.60 68.60 2.03 41.22 15 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 11 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 12 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 13 C -0.25 -14.27 9.29 23.13 0.21 -14.05 15 14 C -0.02 -1.16 6.01 -20.28 -0.12 -1.28 15 15 C -0.25 -9.38 5.82 -20.92 -0.12 -9.50 15 16 C 0.39 13.25 11.28 68.64 0.77 14.02 15 17 O -0.52 -23.64 15.55 -3.47 -0.05 -23.69 15 18 C -0.14 -3.53 10.62 67.15 0.71 -2.82 15 19 S 0.21 5.98 22.22 -56.49 -1.26 4.72 15 20 C -0.29 -12.62 6.31 23.20 0.15 -12.48 15 21 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 22 H 0.07 2.19 7.56 -2.38 -0.02 2.17 15 23 H 0.06 2.23 8.07 -2.39 -0.02 2.21 15 24 H 0.12 6.30 6.16 -2.91 -0.02 6.28 15 25 H 0.29 13.64 8.30 -92.71 -0.77 12.87 15 26 H 0.09 5.24 6.38 -2.91 -0.02 5.22 15 27 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 28 H 0.22 3.03 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -72.23 261.25 5.05 -67.18 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.19 Total: 13.22 kcal Atomic # 6 Polarization: -63.05 SS G_CDS: 2.90 Total: -60.14 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.24 Total: -42.51 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.26 Total: 4.72 kcal Total: -72.23 5.05 -67.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396365674.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.220 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds