Wall clock time and date at job start Mon Mar 30 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37998 * 119.68934 * 2 1 4 4 C 1.40819 * 120.86763 * 179.97438 * 3 2 1 5 5 C 1.46596 * 129.50749 * 180.02562 * 4 3 2 6 6 C 1.41672 * 123.19535 * 0.02562 * 5 4 3 7 7 O 1.21405 * 120.00216 * 179.97438 * 6 5 4 8 8 C 1.35422 * 113.61721 * 180.02562 * 5 4 3 9 9 S 1.70011 * 112.00123 * 0.02562 * 8 5 4 10 10 C 1.39027 * 119.34001 * 0.04339 * 4 3 2 11 11 C 1.42239 * 119.49954 * 359.97438 * 10 4 3 12 12 C 1.40940 * 120.10837 * 179.97438 * 11 10 4 13 13 H 1.07999 * 120.00324 * 334.45679 * 12 11 10 14 14 C 1.39984 * 120.00026 * 154.45551 * 12 11 10 15 15 N 1.30839 * 119.99821 * 342.62407 * 14 12 11 16 16 Si 1.86794 * 120.00013 * 162.62095 * 14 12 11 17 17 H 1.48505 * 109.47100 * 60.00546 * 16 14 12 18 18 H 1.48503 * 109.46746 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47324 * 300.00211 * 16 14 12 20 20 C 1.37784 * 119.69384 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47044 * 269.97686 * 1 2 3 22 22 H 1.08995 * 109.47336 * 29.97909 * 1 2 3 23 23 H 1.09007 * 109.47285 * 149.97953 * 1 2 3 24 24 H 1.08003 * 119.56127 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.99598 * 0.02562 * 6 5 4 26 26 H 1.08002 * 124.00237 * 180.02562 * 8 5 4 27 27 H 0.96994 * 120.00529 * 179.97438 * 15 14 12 28 28 H 1.08003 * 120.04820 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.1988 0.0000 4 6 3.5983 1.2278 0.0005 5 6 4.5075 2.3778 0.0011 6 6 4.0585 3.7215 0.0018 7 8 4.8633 4.6304 0.0028 8 6 5.8173 2.0338 0.0010 9 16 6.0330 0.3475 -0.0005 10 6 4.3043 0.0301 0.0002 11 6 3.5935 -1.2019 -0.0002 12 6 4.2963 -2.4236 -0.0011 13 1 5.2969 -2.4708 -0.4048 14 6 3.6974 -3.5760 0.5212 15 7 2.6544 -3.4735 1.3045 16 14 4.3873 -5.2600 0.1000 17 1 5.7961 -5.3474 0.5615 18 1 3.5794 -6.3084 0.7735 19 1 4.3343 -5.4631 -1.3700 20 6 2.1895 -1.1969 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6382 2.1270 -0.0004 25 1 3.0003 3.9372 0.0023 26 1 6.6289 2.7465 0.0018 27 1 2.2391 -4.2720 1.6662 28 1 1.6452 -2.1298 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396366380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:08 Heat of formation + Delta-G solvation = -14.243524 kcal Electronic energy + Delta-G solvation = -14765.986517 eV Core-core repulsion = 12258.482934 eV Total energy + Delta-G solvation = -2507.503583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.07833 -37.78702 -34.79889 -33.72424 -31.07877 -28.75258 -26.29711 -25.97681 -24.62625 -21.59306 -20.17787 -18.85756 -17.74622 -16.42253 -15.40844 -15.35373 -14.92428 -14.16123 -13.89051 -13.64636 -13.42695 -12.91588 -12.66310 -12.09334 -11.85390 -11.68406 -11.41054 -11.31479 -11.13641 -10.74218 -10.51403 -10.21668 -9.94344 -9.53518 -9.32760 -9.23917 -8.37716 -7.38810 -7.05929 -6.87232 -4.58921 1.14413 2.38499 2.44880 2.57347 2.94327 2.95416 2.98750 3.02778 3.70338 3.75803 4.41493 5.10013 5.28947 5.34192 5.83206 5.90607 6.00260 6.28197 6.31514 6.33844 6.47263 6.57961 6.74489 6.93628 7.04356 7.25619 7.42509 7.65421 7.86258 7.92041 8.02205 8.33609 8.54771 8.63968 9.91328 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.008309 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.796702 B = 3369.096868 C = 4374.373382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.047 4.047 3 C -0.226 4.226 4 C -0.010 4.010 5 C -0.222 4.222 6 C 0.404 3.596 7 O -0.497 6.497 8 C -0.165 4.165 9 S 0.163 5.837 10 C -0.245 4.245 11 C 0.155 3.845 12 C -0.454 4.454 13 H 0.082 0.918 14 C 0.079 3.921 15 N -0.776 5.776 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.173 4.173 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.286 0.714 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 1.464 -1.533 2.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.048 4.048 3 C -0.248 4.248 4 C -0.015 4.015 5 C -0.240 4.240 6 C 0.266 3.734 7 O -0.377 6.377 8 C -0.303 4.303 9 S 0.432 5.568 10 C -0.360 4.360 11 C 0.150 3.850 12 C -0.482 4.482 13 H 0.100 0.900 14 C -0.142 4.142 15 N -0.400 5.400 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.196 4.196 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.179 0.821 27 H 0.097 0.903 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.326 0.841 -1.374 2.086 hybrid contribution -1.036 0.061 -0.017 1.038 sum 0.290 0.902 -1.390 1.682 Atomic orbital electron populations 1.20674 0.93219 1.01041 1.01070 1.19364 0.94244 0.93411 0.97765 1.19809 0.90503 0.96245 1.18247 1.18542 0.93538 0.89559 0.99883 1.19806 0.93060 0.96432 1.14711 1.22048 0.94560 0.86746 0.70070 1.90474 1.59916 1.48837 1.38440 1.25532 1.00306 1.02778 1.01658 1.82433 1.06811 0.95382 1.72162 1.22681 0.94027 0.97526 1.21790 1.16959 0.91687 0.89136 0.87243 1.19526 1.01749 0.92453 1.34498 0.90044 1.25939 0.94169 1.01715 0.92376 1.69807 1.17564 1.32368 1.20241 0.86297 0.80061 0.79975 0.80197 1.18673 1.20028 1.18489 1.20981 0.93111 0.96351 1.09157 0.92281 0.92950 0.92521 0.88672 0.89383 0.82138 0.90264 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.99 36.00 0.36 -1.42 15 2 C -0.05 -1.01 5.85 -104.88 -0.61 -1.63 15 3 C -0.23 -4.78 9.49 -38.69 -0.37 -5.15 15 4 C -0.01 -0.22 6.02 -105.26 -0.63 -0.86 15 5 C -0.22 -4.42 5.83 -106.22 -0.62 -5.03 15 6 C 0.40 7.27 11.20 32.04 0.36 7.63 15 7 O -0.50 -9.90 17.36 5.45 0.09 -9.81 15 8 C -0.16 -3.10 10.32 29.73 0.31 -2.79 15 9 S 0.16 3.20 22.55 -107.50 -2.42 0.77 15 10 C -0.25 -5.75 6.34 -37.75 -0.24 -5.98 15 11 C 0.16 3.88 5.59 -106.52 -0.60 3.29 15 12 C -0.45 -11.15 8.82 -37.91 -0.33 -11.48 15 13 H 0.08 1.93 7.75 -52.49 -0.41 1.52 15 14 C 0.08 1.82 5.13 -17.32 -0.09 1.73 15 15 N -0.78 -18.49 10.99 55.55 0.61 -17.88 15 16 Si 0.91 17.32 29.59 -169.99 -5.03 12.28 15 17 H -0.26 -4.96 7.11 56.52 0.40 -4.55 15 18 H -0.28 -5.09 7.11 56.52 0.40 -4.69 15 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 20 C -0.17 -4.17 8.30 -38.93 -0.32 -4.50 15 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.05 0.79 8.08 -51.93 -0.42 0.37 15 23 H 0.06 0.93 8.08 -51.92 -0.42 0.51 15 24 H 0.10 1.75 7.57 -52.48 -0.40 1.35 15 25 H 0.09 1.34 7.54 -52.49 -0.40 0.94 15 26 H 0.16 2.68 7.91 -52.49 -0.42 2.27 15 27 H 0.29 6.18 8.30 -40.82 -0.34 5.84 15 28 H 0.13 3.07 6.19 -52.48 -0.32 2.75 15 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -26.64 264.25 -7.89 -34.53 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -2.34 Total: 2.31 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -2.79 Total: -26.19 kcal Atomic # 7 Polarization: -18.49 SS G_CDS: 0.61 Total: -17.88 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.42 Total: 0.77 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.64 -7.89 -34.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.286 kcal (2) G-P(sol) polarization free energy of solvation -26.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds