Wall clock time and date at job start Mon Mar 30 2020 05:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37998 * 119.68934 * 2 1 4 4 C 1.40819 * 120.86763 * 179.97438 * 3 2 1 5 5 C 1.46596 * 129.50749 * 180.02562 * 4 3 2 6 6 C 1.41672 * 123.19535 * 0.02562 * 5 4 3 7 7 O 1.21405 * 120.00216 * 179.97438 * 6 5 4 8 8 C 1.35422 * 113.61721 * 180.02562 * 5 4 3 9 9 S 1.70011 * 112.00123 * 0.02562 * 8 5 4 10 10 C 1.39027 * 119.34001 * 0.04339 * 4 3 2 11 11 C 1.42239 * 119.49954 * 359.97438 * 10 4 3 12 12 C 1.40940 * 120.10837 * 179.97438 * 11 10 4 13 13 H 1.07999 * 120.00324 * 334.45679 * 12 11 10 14 14 C 1.39984 * 120.00026 * 154.45551 * 12 11 10 15 15 N 1.30839 * 119.99821 * 342.62407 * 14 12 11 16 16 Si 1.86794 * 120.00013 * 162.62095 * 14 12 11 17 17 H 1.48505 * 109.47100 * 60.00546 * 16 14 12 18 18 H 1.48503 * 109.46746 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47324 * 300.00211 * 16 14 12 20 20 C 1.37784 * 119.69384 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47044 * 269.97686 * 1 2 3 22 22 H 1.08995 * 109.47336 * 29.97909 * 1 2 3 23 23 H 1.09007 * 109.47285 * 149.97953 * 1 2 3 24 24 H 1.08003 * 119.56127 * 359.97438 * 3 2 1 25 25 H 1.08001 * 119.99598 * 0.02562 * 6 5 4 26 26 H 1.08002 * 124.00237 * 180.02562 * 8 5 4 27 27 H 0.96994 * 120.00529 * 179.97438 * 15 14 12 28 28 H 1.08003 * 120.04820 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.1988 0.0000 4 6 3.5983 1.2278 0.0005 5 6 4.5075 2.3778 0.0011 6 6 4.0585 3.7215 0.0018 7 8 4.8633 4.6304 0.0028 8 6 5.8173 2.0338 0.0010 9 16 6.0330 0.3475 -0.0005 10 6 4.3043 0.0301 0.0002 11 6 3.5935 -1.2019 -0.0002 12 6 4.2963 -2.4236 -0.0011 13 1 5.2969 -2.4708 -0.4048 14 6 3.6974 -3.5760 0.5212 15 7 2.6544 -3.4735 1.3045 16 14 4.3873 -5.2600 0.1000 17 1 5.7961 -5.3474 0.5615 18 1 3.5794 -6.3084 0.7735 19 1 4.3343 -5.4631 -1.3700 20 6 2.1895 -1.1969 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 1.6382 2.1270 -0.0004 25 1 3.0003 3.9372 0.0023 26 1 6.6289 2.7465 0.0018 27 1 2.2391 -4.2720 1.6662 28 1 1.6452 -2.1298 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396366380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:08 Heat of formation + Delta-G solvation = -27.200630 kcal Electronic energy + Delta-G solvation = -14766.548379 eV Core-core repulsion = 12258.482934 eV Total energy + Delta-G solvation = -2508.065446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62012 -39.39255 -36.44182 -35.36742 -32.73984 -30.38195 -27.88569 -27.60642 -26.18973 -23.27504 -21.80616 -20.39274 -19.40512 -18.10811 -16.99631 -16.90340 -16.48363 -15.77050 -15.40227 -15.26649 -15.01469 -14.42681 -14.23174 -13.61911 -13.35099 -13.29912 -13.04792 -12.84996 -12.70184 -12.28468 -12.08816 -11.87238 -11.56334 -11.18882 -11.00900 -10.71577 -10.04283 -9.08117 -8.77055 -8.52536 -6.39170 -0.36308 0.75153 0.81828 0.93674 1.34735 1.38094 1.47606 1.50748 2.14079 2.18350 2.71641 3.54823 3.76066 3.79461 4.29993 4.45018 4.54624 4.75281 4.80471 4.94838 4.98428 5.05167 5.15997 5.21444 5.40081 5.56308 5.72924 5.89827 6.15917 6.22424 6.53414 6.60628 6.77524 6.89147 8.22755 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025616 B = 0.008309 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.796702 B = 3369.096868 C = 4374.373382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.054 4.054 3 C -0.226 4.226 4 C -0.022 4.022 5 C -0.234 4.234 6 C 0.413 3.587 7 O -0.516 6.516 8 C -0.157 4.157 9 S 0.183 5.817 10 C -0.282 4.282 11 C 0.126 3.874 12 C -0.487 4.487 13 H 0.078 0.922 14 C 0.043 3.957 15 N -0.807 5.807 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.260 1.260 20 C -0.201 4.201 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.185 0.815 27 H 0.293 0.707 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.501 2.400 -1.707 2.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.055 4.055 3 C -0.248 4.248 4 C -0.028 4.028 5 C -0.252 4.252 6 C 0.276 3.724 7 O -0.396 6.396 8 C -0.295 4.295 9 S 0.451 5.549 10 C -0.397 4.397 11 C 0.121 3.879 12 C -0.516 4.516 13 H 0.096 0.904 14 C -0.175 4.175 15 N -0.431 5.431 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.224 4.224 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.202 0.798 27 H 0.104 0.896 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.071 1.793 -1.546 2.599 hybrid contribution -0.955 -0.104 0.041 0.961 sum 0.116 1.689 -1.505 2.266 Atomic orbital electron populations 1.20695 0.90169 1.02544 1.02107 1.19831 0.96636 0.92732 0.96314 1.20253 0.90519 0.97400 1.16598 1.18933 0.94410 0.89938 0.99473 1.20006 0.92951 0.96967 1.15272 1.22391 0.95928 0.85349 0.68775 1.90478 1.60810 1.48987 1.39370 1.25865 1.00924 1.02670 1.00041 1.82273 1.04437 0.96015 1.72128 1.23053 0.96399 0.97732 1.22479 1.17315 0.92542 0.90109 0.87964 1.19717 1.02089 0.93570 1.36190 0.90424 1.26696 0.94333 1.04772 0.91701 1.69849 1.18693 1.33589 1.21001 0.85305 0.79430 0.75646 0.79822 1.18360 1.18898 1.18383 1.21015 0.93227 0.96925 1.11255 0.91319 0.90195 0.92302 0.85326 0.85551 0.79775 0.89621 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.21 9.99 71.23 0.71 -2.49 15 2 C -0.05 -2.30 5.85 -20.03 -0.12 -2.42 15 3 C -0.23 -9.14 9.49 22.84 0.22 -8.93 15 4 C -0.02 -0.95 6.02 -20.28 -0.12 -1.07 15 5 C -0.23 -8.83 5.83 -20.90 -0.12 -8.95 15 6 C 0.41 13.55 11.20 68.67 0.77 14.32 15 7 O -0.52 -19.08 17.36 -3.42 -0.06 -19.14 15 8 C -0.16 -5.63 10.32 67.17 0.69 -4.93 15 9 S 0.18 7.10 22.55 -56.49 -1.27 5.83 15 10 C -0.28 -13.32 6.34 23.45 0.15 -13.17 15 11 C 0.13 6.48 5.59 -21.10 -0.12 6.36 15 12 C -0.49 -24.76 8.82 23.36 0.21 -24.56 15 13 H 0.08 3.82 7.75 -2.91 -0.02 3.80 15 14 C 0.04 2.02 5.13 85.26 0.44 2.46 15 15 N -0.81 -39.50 10.99 21.84 0.24 -39.26 15 16 Si 0.98 35.89 29.59 68.60 2.03 37.92 15 17 H -0.26 -9.30 7.11 99.48 0.71 -8.60 15 18 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 20 C -0.20 -9.96 8.30 22.69 0.19 -9.77 15 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.08 2.14 8.08 -2.39 -0.02 2.12 15 23 H 0.06 1.87 8.08 -2.38 -0.02 1.85 15 24 H 0.13 4.22 7.57 -2.91 -0.02 4.20 15 25 H 0.13 3.25 7.54 -2.91 -0.02 3.23 15 26 H 0.19 5.67 7.91 -2.91 -0.02 5.65 15 27 H 0.29 12.90 8.30 -92.71 -0.77 12.13 15 28 H 0.11 5.62 6.19 -2.91 -0.02 5.60 15 Total: -1.00 -57.88 264.25 5.02 -52.86 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.19 Total: 14.95 kcal Atomic # 6 Polarization: -56.04 SS G_CDS: 2.89 Total: -53.15 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.24 Total: -39.26 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: 7.10 SS G_CDS: -1.27 Total: 5.83 kcal Total: -57.88 5.02 -52.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.660 kcal (2) G-P(sol) polarization free energy of solvation -57.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds