Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38961 * 119.88349 * 2 1 4 4 C 1.36040 * 120.49389 * 180.02562 * 3 2 1 5 5 C 1.41384 * 120.51001 * 0.23463 * 4 3 2 6 6 C 1.39901 * 118.94102 * 359.47400 * 5 4 3 7 7 C 1.37494 * 119.88183 * 179.97438 * 2 1 3 8 8 S 1.75837 * 110.76793 * 180.31651 * 6 5 4 9 9 C 1.75207 * 92.76346 * 359.67055 * 8 6 5 10 10 C 1.39228 * 124.65259 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00297 * 173.92742 * 10 9 8 12 12 C 1.40792 * 120.00251 * 353.93033 * 10 9 8 13 13 N 1.30386 * 119.99696 * 6.77163 * 12 10 9 14 14 Si 1.86795 * 120.00563 * 186.77124 * 12 10 9 15 15 H 1.48495 * 109.47084 * 94.98337 * 14 12 10 16 16 H 1.48495 * 109.47293 * 214.99135 * 14 12 10 17 17 H 1.48506 * 109.46933 * 334.98742 * 14 12 10 18 18 C 1.39085 * 110.69440 * 0.47323 * 9 8 6 19 19 C 1.41334 * 123.29047 * 179.48338 * 18 9 8 20 20 O 1.21465 * 120.00076 * 180.02562 * 19 18 9 21 21 H 1.09000 * 109.47447 * 89.99681 * 1 2 3 22 22 H 1.09005 * 109.47274 * 209.99464 * 1 2 3 23 23 H 1.08994 * 109.47289 * 329.99804 * 1 2 3 24 24 H 1.08001 * 119.75527 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.74178 * 179.97438 * 4 3 2 26 26 H 1.07995 * 119.82541 * 0.02562 * 7 2 1 27 27 H 0.96998 * 120.00089 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.00132 * 0.02599 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2048 0.0000 4 6 3.5597 1.2193 -0.0005 5 6 4.2904 0.0090 -0.0061 6 6 3.5922 -1.2033 0.0002 7 6 2.1920 -1.1921 0.0005 8 16 4.7058 -2.5641 0.0007 9 6 6.1136 -1.5213 -0.0176 10 6 7.4314 -1.9703 -0.0245 11 1 8.2418 -1.2649 -0.1348 12 6 7.7078 -3.3441 0.1121 13 7 6.7317 -4.2085 0.1124 14 14 9.4728 -3.9284 0.2930 15 1 9.7984 -4.0811 1.7338 16 1 9.6342 -5.2357 -0.3924 17 1 10.3890 -2.9324 -0.3186 18 6 5.7341 -0.1832 -0.0130 19 6 6.6590 0.8855 -0.0145 20 8 6.2611 2.0331 -0.0097 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6534 2.1367 0.0004 25 1 4.0854 2.1627 -0.0009 26 1 1.6472 -2.1246 0.0005 27 1 6.9220 -5.1549 0.2070 28 1 7.7196 0.6818 -0.0198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396366502.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -36.571333 kcal Electronic energy + Delta-G solvation = -14733.955099 eV Core-core repulsion = 12225.483309 eV Total energy + Delta-G solvation = -2508.471790 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.60081 -37.06540 -35.26047 -33.53438 -30.82957 -29.82917 -27.51440 -25.05607 -23.50045 -21.38581 -20.82709 -18.84552 -17.56965 -16.04343 -15.85286 -14.87056 -14.54052 -14.06672 -13.45361 -13.33307 -13.03591 -12.83545 -12.70781 -12.36930 -11.97974 -11.74690 -11.62175 -11.55532 -11.33072 -10.74429 -10.49447 -10.43811 -10.20903 -9.42519 -9.30170 -8.43462 -8.07766 -7.57467 -7.54846 -6.55728 -5.15632 1.96457 2.29421 2.50037 2.65633 2.74239 2.85491 3.02406 3.33606 3.59341 3.97119 4.45918 5.09183 5.59489 5.64245 5.79932 5.94762 6.01967 6.03272 6.24398 6.25733 6.54134 6.57362 6.80048 6.93994 7.11044 7.26849 7.34131 7.47180 7.50270 7.60880 7.88202 8.00009 8.08822 9.17193 9.21172 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.007808 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.212421 B = 3585.035685 C = 4463.378127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.145 4.145 3 C -0.116 4.116 4 C -0.123 4.123 5 C 0.036 3.964 6 C -0.237 4.237 7 C -0.069 4.069 8 S 0.136 5.864 9 C 0.081 3.919 10 C -0.350 4.350 11 H 0.112 0.888 12 C 0.052 3.948 13 N -0.741 5.741 14 Si 0.944 3.056 15 H -0.258 1.258 16 H -0.267 1.267 17 H -0.250 1.250 18 C -0.421 4.421 19 C 0.396 3.604 20 O -0.553 6.553 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.106 0.894 25 H 0.126 0.874 26 H 0.105 0.895 27 H 0.310 0.690 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -3.147 0.191 3.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C -0.136 4.136 4 C -0.142 4.142 5 C 0.029 3.971 6 C -0.351 4.351 7 C -0.091 4.091 8 S 0.397 5.603 9 C -0.040 4.040 10 C -0.383 4.383 11 H 0.130 0.870 12 C -0.175 4.175 13 N -0.365 5.365 14 Si 0.765 3.235 15 H -0.183 1.183 16 H -0.191 1.191 17 H -0.173 1.173 18 C -0.428 4.428 19 C 0.269 3.731 20 O -0.441 6.441 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.124 0.876 25 H 0.144 0.856 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.826 -4.355 0.212 4.727 hybrid contribution 0.834 0.954 0.072 1.269 sum -0.993 -3.401 0.284 3.555 Atomic orbital electron populations 1.20570 0.92364 1.01406 1.00974 1.19388 0.94760 0.93136 1.07455 1.20339 0.94144 0.96406 1.02747 1.20941 0.93197 0.97837 1.02270 1.18912 0.91964 0.91848 0.94359 1.23681 0.97978 1.00741 1.12696 1.20108 0.91285 0.96535 1.01201 1.84733 0.92850 1.03177 1.79559 1.21737 0.96487 0.94361 0.91385 1.19711 0.92744 0.92890 1.32934 0.87041 1.26648 1.02413 0.96398 0.92060 1.68552 1.34936 1.05625 1.27381 0.85634 0.78304 0.79296 0.80261 1.18280 1.19092 1.17325 1.19029 0.92380 0.93618 1.37791 1.21173 0.92677 0.87082 0.72173 1.90338 1.83426 1.24834 1.45531 0.92543 0.92636 0.92584 0.87642 0.85635 0.87709 0.87615 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.01 36.00 0.36 -1.07 15 2 C -0.15 -2.84 5.88 -104.63 -0.61 -3.46 15 3 C -0.12 -2.39 9.61 -40.10 -0.39 -2.78 15 4 C -0.12 -2.92 9.48 -39.17 -0.37 -3.29 15 5 C 0.04 0.91 6.00 -105.12 -0.63 0.28 15 6 C -0.24 -5.68 6.44 -38.29 -0.25 -5.93 15 7 C -0.07 -1.45 9.71 -39.18 -0.38 -1.84 15 8 S 0.14 3.18 20.04 -107.50 -2.15 1.03 15 9 C 0.08 1.99 6.13 -38.90 -0.24 1.75 15 10 C -0.35 -7.78 8.91 -38.25 -0.34 -8.12 15 11 H 0.11 2.29 6.66 -52.49 -0.35 1.94 15 12 C 0.05 1.05 5.50 -17.20 -0.09 0.95 15 13 N -0.74 -15.34 10.58 55.59 0.59 -14.75 15 14 Si 0.94 14.79 29.57 -169.99 -5.03 9.76 15 15 H -0.26 -4.05 7.11 56.52 0.40 -3.64 15 16 H -0.27 -4.06 7.11 56.52 0.40 -3.65 15 17 H -0.25 -3.88 7.11 56.52 0.40 -3.48 15 18 C -0.42 -10.76 5.90 -105.45 -0.62 -11.38 15 19 C 0.40 9.71 10.97 31.91 0.35 10.06 15 20 O -0.55 -14.64 15.43 5.40 0.08 -14.55 15 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.05 0.75 8.08 -51.93 -0.42 0.33 15 23 H 0.06 0.75 8.08 -51.93 -0.42 0.33 15 24 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 25 H 0.13 3.06 6.27 -52.49 -0.33 2.73 15 26 H 0.10 1.96 8.06 -52.49 -0.42 1.54 15 27 H 0.31 5.59 8.29 -40.82 -0.34 5.25 15 28 H 0.06 1.25 6.84 -52.49 -0.36 0.89 15 LS Contribution 259.95 15.07 3.92 3.92 Total: -1.00 -27.33 259.95 -8.09 -35.42 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -2.28 Total: 4.00 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -3.21 Total: -24.82 kcal Atomic # 7 Polarization: -15.34 SS G_CDS: 0.59 Total: -14.75 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 14.79 SS G_CDS: -5.03 Total: 9.76 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.15 Total: 1.03 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.33 -8.09 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366502.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.156 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds