Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38961 * 119.88349 * 2 1 4 4 C 1.36040 * 120.49389 * 180.02562 * 3 2 1 5 5 C 1.41384 * 120.51001 * 0.23463 * 4 3 2 6 6 C 1.39901 * 118.94102 * 359.47400 * 5 4 3 7 7 C 1.37494 * 119.88183 * 179.97438 * 2 1 3 8 8 S 1.75837 * 110.76793 * 180.31651 * 6 5 4 9 9 C 1.75207 * 92.76346 * 359.67055 * 8 6 5 10 10 C 1.39228 * 124.65259 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00297 * 173.92742 * 10 9 8 12 12 C 1.40792 * 120.00251 * 353.93033 * 10 9 8 13 13 N 1.30386 * 119.99696 * 6.77163 * 12 10 9 14 14 Si 1.86795 * 120.00563 * 186.77124 * 12 10 9 15 15 H 1.48495 * 109.47084 * 94.98337 * 14 12 10 16 16 H 1.48495 * 109.47293 * 214.99135 * 14 12 10 17 17 H 1.48506 * 109.46933 * 334.98742 * 14 12 10 18 18 C 1.39085 * 110.69440 * 0.47323 * 9 8 6 19 19 C 1.41334 * 123.29047 * 179.48338 * 18 9 8 20 20 O 1.21465 * 120.00076 * 180.02562 * 19 18 9 21 21 H 1.09000 * 109.47447 * 89.99681 * 1 2 3 22 22 H 1.09005 * 109.47274 * 209.99464 * 1 2 3 23 23 H 1.08994 * 109.47289 * 329.99804 * 1 2 3 24 24 H 1.08001 * 119.75527 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.74178 * 179.97438 * 4 3 2 26 26 H 1.07995 * 119.82541 * 0.02562 * 7 2 1 27 27 H 0.96998 * 120.00089 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.00132 * 0.02599 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.2048 0.0000 4 6 3.5597 1.2193 -0.0005 5 6 4.2904 0.0090 -0.0061 6 6 3.5922 -1.2033 0.0002 7 6 2.1920 -1.1921 0.0005 8 16 4.7058 -2.5641 0.0007 9 6 6.1136 -1.5213 -0.0176 10 6 7.4314 -1.9703 -0.0245 11 1 8.2418 -1.2649 -0.1348 12 6 7.7078 -3.3441 0.1121 13 7 6.7317 -4.2085 0.1124 14 14 9.4728 -3.9284 0.2930 15 1 9.7984 -4.0811 1.7338 16 1 9.6342 -5.2357 -0.3924 17 1 10.3890 -2.9324 -0.3186 18 6 5.7341 -0.1832 -0.0130 19 6 6.6590 0.8855 -0.0145 20 8 6.2611 2.0331 -0.0097 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6534 2.1367 0.0004 25 1 4.0854 2.1627 -0.0009 26 1 1.6472 -2.1246 0.0005 27 1 6.9220 -5.1549 0.2070 28 1 7.7196 0.6818 -0.0198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396366502.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -50.454216 kcal Electronic energy + Delta-G solvation = -14734.557106 eV Core-core repulsion = 12225.483309 eV Total energy + Delta-G solvation = -2509.073797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33590 -38.87102 -36.97330 -35.20246 -32.42252 -31.53251 -29.12941 -26.67215 -25.24621 -23.10368 -22.47306 -20.57380 -19.34566 -17.66710 -17.57582 -16.56620 -16.15740 -15.65202 -15.07789 -15.01038 -14.68558 -14.42101 -14.36127 -13.96834 -13.57315 -13.30029 -13.06893 -12.97375 -12.87254 -12.18599 -12.02149 -11.92931 -11.83725 -11.09340 -11.02346 -10.19230 -9.95805 -9.27305 -9.16168 -8.35163 -6.93878 0.27994 0.56402 0.80074 1.26410 1.34756 1.52832 1.57168 1.75333 2.07610 2.28244 2.76057 3.28512 4.03682 4.12125 4.18847 4.40764 4.56528 4.65475 4.82349 4.86942 4.93111 5.06458 5.13347 5.22975 5.43976 5.58019 5.59221 5.76879 5.82966 5.91015 6.14548 6.22876 6.37881 7.31497 7.66492 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031200 B = 0.007808 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.212421 B = 3585.035685 C = 4463.378127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.137 4.137 3 C -0.112 4.112 4 C -0.151 4.151 5 C -0.002 4.002 6 C -0.257 4.257 7 C -0.080 4.080 8 S 0.132 5.868 9 C 0.051 3.949 10 C -0.350 4.350 11 H 0.125 0.875 12 C 0.019 3.981 13 N -0.754 5.754 14 Si 1.018 2.982 15 H -0.254 1.254 16 H -0.254 1.254 17 H -0.246 1.246 18 C -0.459 4.459 19 C 0.386 3.614 20 O -0.587 6.587 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.138 0.862 25 H 0.108 0.892 26 H 0.129 0.871 27 H 0.326 0.674 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -4.684 0.286 4.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.132 4.132 4 C -0.170 4.170 5 C -0.008 4.008 6 C -0.370 4.370 7 C -0.102 4.102 8 S 0.392 5.608 9 C -0.070 4.070 10 C -0.382 4.382 11 H 0.142 0.858 12 C -0.207 4.207 13 N -0.378 5.378 14 Si 0.834 3.166 15 H -0.179 1.179 16 H -0.178 1.178 17 H -0.169 1.169 18 C -0.465 4.465 19 C 0.262 3.738 20 O -0.478 6.478 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.156 0.844 25 H 0.126 0.874 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.145 -5.892 0.302 6.277 hybrid contribution 0.870 1.286 0.040 1.553 sum -1.275 -4.606 0.342 4.792 Atomic orbital electron populations 1.20648 0.88346 1.03274 1.02678 1.19965 0.97536 0.91906 1.04462 1.20734 0.93031 0.98499 1.00893 1.20993 0.94751 0.96776 1.04510 1.19259 0.92542 0.93074 0.95961 1.23980 0.99329 1.00319 1.13392 1.20529 0.90409 0.98411 1.00896 1.84400 0.92761 1.03195 1.80458 1.22026 0.97744 0.94353 0.92844 1.20238 0.92352 0.94635 1.30993 0.85777 1.27654 1.06696 0.95390 0.90965 1.68527 1.37024 1.06816 1.25428 0.84589 0.72506 0.79167 0.80347 1.17862 1.17752 1.16901 1.19309 0.93041 0.94416 1.39780 1.21483 0.93769 0.86554 0.71946 1.90302 1.84001 1.25700 1.47844 0.90732 0.90978 0.90622 0.84416 0.87422 0.85333 0.85943 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 10.01 71.24 0.71 -1.67 15 2 C -0.14 -5.07 5.88 -19.87 -0.12 -5.19 15 3 C -0.11 -4.51 9.61 21.93 0.21 -4.30 15 4 C -0.15 -7.42 9.48 22.53 0.21 -7.20 15 5 C 0.00 -0.12 6.00 -20.19 -0.12 -0.24 15 6 C -0.26 -12.54 6.44 23.11 0.15 -12.39 15 7 C -0.08 -3.31 9.71 22.53 0.22 -3.10 15 8 S 0.13 6.28 20.04 -56.49 -1.13 5.14 15 9 C 0.05 2.58 6.13 22.71 0.14 2.71 15 10 C -0.35 -15.50 8.91 23.13 0.21 -15.29 15 11 H 0.12 5.03 6.66 -2.91 -0.02 5.01 15 12 C 0.02 0.72 5.50 85.53 0.47 1.19 15 13 N -0.75 -30.27 10.58 21.97 0.23 -30.04 15 14 Si 1.02 28.02 29.57 68.60 2.03 30.05 15 15 H -0.25 -6.88 7.11 99.48 0.71 -6.18 15 16 H -0.25 -6.49 7.11 99.48 0.71 -5.78 15 17 H -0.25 -6.62 7.11 99.48 0.71 -5.91 15 18 C -0.46 -24.50 5.90 -20.40 -0.12 -24.63 15 19 C 0.39 19.80 10.97 68.58 0.75 20.55 15 20 O -0.59 -32.72 15.43 -3.60 -0.06 -32.78 15 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.07 1.65 8.08 -2.38 -0.02 1.63 15 23 H 0.07 1.68 8.08 -2.39 -0.02 1.66 15 24 H 0.14 4.54 8.06 -2.91 -0.02 4.52 15 25 H 0.11 5.57 6.27 -2.91 -0.02 5.55 15 26 H 0.13 4.58 8.06 -2.91 -0.02 4.56 15 27 H 0.33 11.09 8.29 -92.71 -0.77 10.33 15 28 H 0.08 3.71 6.84 -2.91 -0.02 3.69 15 Total: -1.00 -61.39 259.95 4.98 -56.42 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.19 Total: 20.77 kcal Atomic # 6 Polarization: -52.27 SS G_CDS: 2.71 Total: -49.56 kcal Atomic # 7 Polarization: -30.27 SS G_CDS: 0.23 Total: -30.04 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.06 Total: -32.78 kcal Atomic # 14 Polarization: 28.02 SS G_CDS: 2.03 Total: 30.05 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.13 Total: 5.14 kcal Total: -61.39 4.98 -56.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366502.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -61.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds