Wall clock time and date at job start Mon Mar 30 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.69996 * 124.06247 * 2 1 4 4 C 1.75821 * 93.19666 * 180.18150 * 3 2 1 5 5 C 1.39811 * 130.12726 * 179.80606 * 4 3 2 6 6 C 1.37895 * 120.78410 * 180.02562 * 5 4 3 7 7 C 1.38112 * 120.42611 * 0.02562 * 6 5 4 8 8 C 1.39284 * 120.05937 * 0.02562 * 7 6 5 9 9 C 1.46760 * 120.04447 * 180.02562 * 8 7 6 10 10 O 1.21305 * 120.00155 * 355.64841 * 9 8 7 11 11 C 1.39235 * 110.16060 * 359.82655 * 4 3 2 12 12 C 1.36652 * 124.06908 * 179.85803 * 2 1 3 13 13 C 1.40955 * 123.29035 * 0.03550 * 12 2 1 14 14 H 1.07998 * 120.00055 * 132.62995 * 13 12 2 15 15 C 1.39713 * 119.99608 * 312.63775 * 13 12 2 16 16 N 1.31067 * 120.00110 * 351.32241 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 171.59618 * 15 13 12 18 18 H 1.48501 * 109.46834 * 59.99715 * 17 15 13 19 19 H 1.48497 * 109.47229 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47385 * 300.00099 * 17 15 13 21 21 H 1.08996 * 109.46656 * 275.05466 * 1 2 3 22 22 H 1.09004 * 109.47323 * 35.05541 * 1 2 3 23 23 H 1.09004 * 109.46795 * 155.05509 * 1 2 3 24 24 H 1.07999 * 119.61019 * 0.02562 * 5 4 3 25 25 H 1.07993 * 119.79022 * 180.02562 * 6 5 4 26 26 H 1.07999 * 119.96908 * 180.02562 * 7 6 5 27 27 H 1.08007 * 119.99905 * 175.65089 * 9 8 7 28 28 H 0.97001 * 119.99757 * 185.01374 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4591 1.4083 0.0000 4 6 3.9683 0.5063 -0.0056 5 6 5.2902 0.9616 -0.0118 6 6 6.3433 0.0714 -0.0160 7 6 6.1086 -1.2896 -0.0145 8 6 4.8021 -1.7723 -0.0093 9 6 4.5531 -3.2186 -0.0072 10 8 5.4822 -3.9942 -0.0896 11 6 3.7097 -0.8618 -0.0034 12 6 2.2725 -1.1320 0.0028 13 6 1.7299 -2.4329 0.0053 14 1 2.1070 -3.1766 -0.6811 15 6 0.7041 -2.7602 0.8956 16 7 0.3623 -1.9179 1.8399 17 14 -0.1751 -4.4014 0.7450 18 1 0.8055 -5.5048 0.9061 19 1 -1.2142 -4.5051 1.8008 20 1 -0.8152 -4.4993 -0.5915 21 1 -0.3632 0.0905 1.0237 22 1 -0.3634 0.8413 -0.5903 23 1 -0.3633 -0.9319 -0.4334 24 1 5.4889 2.0232 -0.0135 25 1 7.3581 0.4408 -0.0204 26 1 6.9389 -1.9802 -0.0173 27 1 3.5426 -3.5925 0.0677 28 1 -0.2986 -2.1738 2.5021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396366517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:31 Heat of formation + Delta-G solvation = -3.644976 kcal Electronic energy + Delta-G solvation = -15165.088355 eV Core-core repulsion = 12658.044359 eV Total energy + Delta-G solvation = -2507.043996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21202 -37.48595 -35.46884 -32.39758 -30.64056 -29.96838 -27.36874 -25.43308 -23.13519 -22.03393 -20.17680 -19.41881 -16.98380 -16.64180 -15.51522 -15.12211 -14.64527 -14.30135 -13.79787 -13.66817 -13.58177 -12.85892 -12.76154 -11.98705 -11.77782 -11.58438 -11.40722 -11.23686 -10.89116 -10.80936 -10.33391 -10.21932 -9.87255 -9.56655 -9.15997 -8.79481 -8.58865 -7.40931 -6.73652 -6.55793 -4.49688 1.15171 1.77898 2.60460 2.98135 3.08435 3.10949 3.11597 3.44649 3.57705 3.97531 4.48125 4.92924 5.15792 5.34017 5.56739 5.70471 5.96881 6.18644 6.28056 6.49576 6.57239 6.72881 6.76459 6.93848 6.99054 7.07916 7.14394 7.42598 7.56793 7.79374 8.14860 8.28095 8.62290 8.81438 10.31475 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.011619 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.376837 B = 2409.341371 C = 3647.429291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.272 4.272 3 S 0.052 5.948 4 C -0.163 4.163 5 C -0.057 4.057 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.156 4.156 9 C 0.374 3.626 10 O -0.494 6.494 11 C -0.008 4.008 12 C 0.076 3.924 13 C -0.465 4.465 14 H 0.081 0.919 15 C 0.076 3.924 16 N -0.806 5.806 17 Si 0.900 3.100 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.065 0.935 22 H 0.021 0.979 23 H 0.062 0.938 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.135 0.865 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 3.374 -1.802 4.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.389 4.389 3 S 0.316 5.684 4 C -0.278 4.278 5 C -0.081 4.081 6 C -0.169 4.169 7 C -0.095 4.095 8 C -0.159 4.159 9 C 0.237 3.763 10 O -0.371 6.371 11 C -0.019 4.019 12 C 0.067 3.933 13 C -0.499 4.499 14 H 0.099 0.901 15 C -0.139 4.139 16 N -0.434 5.434 17 Si 0.725 3.275 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.190 1.190 21 H 0.083 0.917 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.135 0.865 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.643 4.532 -1.678 5.508 hybrid contribution -0.158 -2.041 0.240 2.061 sum 2.485 2.491 -1.438 3.801 Atomic orbital electron populations 1.19843 0.89305 0.99178 1.00558 1.23252 0.99310 0.93761 1.22552 1.81964 0.94088 1.10923 1.81378 1.22576 0.97578 0.97474 1.10193 1.20594 0.90205 0.99042 0.98224 1.20700 0.98096 0.93031 1.05081 1.21139 0.95923 0.95401 0.97022 1.20643 0.92453 0.96022 1.06735 1.25080 0.95564 0.87498 0.68170 1.90395 1.49632 1.59812 1.37284 1.19997 0.94848 0.91080 0.95967 1.17136 0.86016 0.94244 0.95860 1.18753 1.16457 0.95623 1.19026 0.90133 1.25632 0.95476 0.98087 0.94720 1.69886 1.27571 1.34816 1.11121 0.86474 0.79715 0.82347 0.78935 1.19037 1.20417 1.18971 0.91652 0.96019 0.91965 0.86518 0.86068 0.85689 0.84877 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.66 8.48 36.01 0.31 -0.36 15 2 C -0.27 -6.37 5.88 -34.88 -0.21 -6.58 15 3 S 0.05 1.07 22.89 -107.50 -2.46 -1.39 15 4 C -0.16 -3.41 6.43 -38.62 -0.25 -3.66 15 5 C -0.06 -1.01 10.05 -39.12 -0.39 -1.40 15 6 C -0.15 -2.44 10.00 -39.75 -0.40 -2.84 15 7 C -0.07 -1.36 9.57 -39.24 -0.38 -1.73 15 8 C -0.16 -3.30 5.91 -104.54 -0.62 -3.91 15 9 C 0.37 7.89 10.93 34.17 0.37 8.26 15 10 O -0.49 -10.88 17.14 5.54 0.09 -10.78 15 11 C -0.01 -0.19 6.02 -104.79 -0.63 -0.82 15 12 C 0.08 1.86 5.32 -106.23 -0.57 1.30 15 13 C -0.46 -11.20 6.61 -38.00 -0.25 -11.45 15 14 H 0.08 1.85 6.28 -52.49 -0.33 1.52 15 15 C 0.08 1.79 4.16 -17.33 -0.07 1.72 15 16 N -0.81 -19.72 10.32 55.54 0.57 -19.15 15 17 Si 0.90 18.03 29.57 -169.99 -5.03 13.01 15 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 20 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 21 H 0.07 1.50 7.05 -51.93 -0.37 1.13 15 22 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 23 H 0.06 1.42 6.66 -51.93 -0.35 1.08 15 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.13 2.12 7.62 -52.49 -0.40 1.72 15 27 H 0.14 2.82 4.48 -52.48 -0.23 2.59 15 28 H 0.28 6.36 8.31 -40.82 -0.34 6.02 15 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -26.29 255.27 -8.13 -34.42 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -2.08 Total: 1.53 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.08 Total: -21.47 kcal Atomic # 7 Polarization: -19.72 SS G_CDS: 0.57 Total: -19.15 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.46 Total: -1.39 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.29 -8.13 -34.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.773 kcal (2) G-P(sol) polarization free energy of solvation -26.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds