Wall clock time and date at job start Mon Mar 30 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.69996 * 124.06247 * 2 1 4 4 C 1.75821 * 93.19666 * 180.18150 * 3 2 1 5 5 C 1.39811 * 130.12726 * 179.80606 * 4 3 2 6 6 C 1.37895 * 120.78410 * 180.02562 * 5 4 3 7 7 C 1.38112 * 120.42611 * 0.02562 * 6 5 4 8 8 C 1.39284 * 120.05937 * 0.02562 * 7 6 5 9 9 C 1.46760 * 120.04447 * 180.02562 * 8 7 6 10 10 O 1.21305 * 120.00155 * 355.64841 * 9 8 7 11 11 C 1.39235 * 110.16060 * 359.82655 * 4 3 2 12 12 C 1.36652 * 124.06908 * 179.85803 * 2 1 3 13 13 C 1.40955 * 123.29035 * 0.03550 * 12 2 1 14 14 H 1.07998 * 120.00055 * 132.62995 * 13 12 2 15 15 C 1.39713 * 119.99608 * 312.63775 * 13 12 2 16 16 N 1.31067 * 120.00110 * 351.32241 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 171.59618 * 15 13 12 18 18 H 1.48501 * 109.46834 * 59.99715 * 17 15 13 19 19 H 1.48497 * 109.47229 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47385 * 300.00099 * 17 15 13 21 21 H 1.08996 * 109.46656 * 275.05466 * 1 2 3 22 22 H 1.09004 * 109.47323 * 35.05541 * 1 2 3 23 23 H 1.09004 * 109.46795 * 155.05509 * 1 2 3 24 24 H 1.07999 * 119.61019 * 0.02562 * 5 4 3 25 25 H 1.07993 * 119.79022 * 180.02562 * 6 5 4 26 26 H 1.07999 * 119.96908 * 180.02562 * 7 6 5 27 27 H 1.08007 * 119.99905 * 175.65089 * 9 8 7 28 28 H 0.97001 * 119.99757 * 185.01374 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4591 1.4083 0.0000 4 6 3.9683 0.5063 -0.0056 5 6 5.2902 0.9616 -0.0118 6 6 6.3433 0.0714 -0.0160 7 6 6.1086 -1.2896 -0.0145 8 6 4.8021 -1.7723 -0.0093 9 6 4.5531 -3.2186 -0.0072 10 8 5.4822 -3.9942 -0.0896 11 6 3.7097 -0.8618 -0.0034 12 6 2.2725 -1.1320 0.0028 13 6 1.7299 -2.4329 0.0053 14 1 2.1070 -3.1766 -0.6811 15 6 0.7041 -2.7602 0.8956 16 7 0.3623 -1.9179 1.8399 17 14 -0.1751 -4.4014 0.7450 18 1 0.8055 -5.5048 0.9061 19 1 -1.2142 -4.5051 1.8008 20 1 -0.8152 -4.4993 -0.5915 21 1 -0.3632 0.0905 1.0237 22 1 -0.3634 0.8413 -0.5903 23 1 -0.3633 -0.9319 -0.4334 24 1 5.4889 2.0232 -0.0135 25 1 7.3581 0.4408 -0.0204 26 1 6.9389 -1.9802 -0.0173 27 1 3.5426 -3.5925 0.0677 28 1 -0.2986 -2.1738 2.5021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396366517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:31 Heat of formation + Delta-G solvation = -16.400586 kcal Electronic energy + Delta-G solvation = -15165.641480 eV Core-core repulsion = 12658.044359 eV Total energy + Delta-G solvation = -2507.597120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79418 -39.12743 -37.12093 -34.10425 -32.16888 -31.61221 -29.09932 -27.06183 -24.76784 -23.63424 -21.73274 -21.11700 -18.63882 -18.28907 -17.07703 -16.79592 -16.25771 -15.87143 -15.40375 -15.30054 -15.11707 -14.54880 -14.42445 -13.59409 -13.38523 -13.21489 -13.01882 -12.86650 -12.55688 -12.41027 -11.98017 -11.81322 -11.46258 -11.26259 -10.85463 -10.49254 -10.15148 -9.01473 -8.48950 -8.24144 -6.30399 -0.41396 0.24941 1.03913 1.35164 1.44377 1.51226 1.52903 1.74814 1.90496 2.29723 2.86282 3.20036 3.57695 4.01324 4.08151 4.31686 4.46223 4.68367 4.76173 4.84218 4.92677 5.17652 5.18447 5.25647 5.33065 5.45417 5.51603 5.74574 5.99250 6.02605 6.43875 6.55101 6.85673 7.01658 8.55736 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.011619 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.376837 B = 2409.341371 C = 3647.429291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.301 4.301 3 S 0.083 5.917 4 C -0.182 4.182 5 C -0.051 4.051 6 C -0.130 4.130 7 C -0.069 4.069 8 C -0.180 4.180 9 C 0.379 3.621 10 O -0.508 6.508 11 C -0.041 4.041 12 C 0.050 3.950 13 C -0.484 4.484 14 H 0.080 0.920 15 C 0.044 3.956 16 N -0.836 5.836 17 Si 0.958 3.042 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.263 1.263 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.154 0.846 25 H 0.171 0.829 26 H 0.141 0.859 27 H 0.128 0.872 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 4.361 -2.028 6.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.418 4.418 3 S 0.347 5.653 4 C -0.297 4.297 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.090 4.090 8 C -0.183 4.183 9 C 0.243 3.757 10 O -0.387 6.387 11 C -0.051 4.051 12 C 0.041 3.959 13 C -0.518 4.518 14 H 0.098 0.902 15 C -0.169 4.169 16 N -0.465 5.465 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.187 1.187 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.172 0.828 25 H 0.188 0.812 26 H 0.159 0.841 27 H 0.144 0.856 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.329 5.530 -1.911 7.278 hybrid contribution -0.542 -2.258 0.282 2.339 sum 3.787 3.272 -1.629 5.263 Atomic orbital electron populations 1.19707 0.89114 0.99127 0.99931 1.23574 1.00137 0.95373 1.22705 1.81589 0.93448 1.08980 1.81245 1.22926 0.99126 0.96842 1.10826 1.21096 0.88765 1.01314 0.96182 1.21236 1.00143 0.91708 1.01979 1.21478 0.95019 0.97033 0.95496 1.20704 0.93504 0.95473 1.08601 1.24982 0.95158 0.87980 0.67593 1.90375 1.49762 1.60148 1.38372 1.20071 0.94463 0.92530 0.98081 1.17519 0.87442 0.94698 0.96248 1.18962 1.17287 0.96047 1.19538 0.90197 1.26242 0.95641 1.00813 0.94178 1.69958 1.28304 1.36333 1.11856 0.85597 0.78636 0.78842 0.78864 1.18866 1.20013 1.18733 0.92887 0.94065 0.93564 0.82798 0.81173 0.84129 0.85620 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.91 8.48 71.24 0.60 -0.30 15 2 C -0.30 -14.30 5.88 25.31 0.15 -14.15 15 3 S 0.08 3.32 22.89 -56.49 -1.29 2.03 15 4 C -0.18 -7.32 6.43 22.89 0.15 -7.17 15 5 C -0.05 -1.58 10.05 22.57 0.23 -1.35 15 6 C -0.13 -3.66 10.00 22.16 0.22 -3.44 15 7 C -0.07 -2.36 9.57 22.49 0.22 -2.15 15 8 C -0.18 -7.51 5.91 -19.81 -0.12 -7.63 15 9 C 0.38 16.14 10.93 70.05 0.77 16.91 15 10 O -0.51 -22.26 17.14 -3.11 -0.05 -22.32 15 11 C -0.04 -1.87 6.02 -19.97 -0.12 -1.99 15 12 C 0.05 2.50 5.32 -20.91 -0.11 2.39 15 13 C -0.48 -24.05 6.61 23.29 0.15 -23.90 15 14 H 0.08 3.82 6.28 -2.91 -0.02 3.81 15 15 C 0.04 2.10 4.16 85.16 0.35 2.45 15 16 N -0.84 -41.96 10.32 21.80 0.22 -41.73 15 17 Si 0.96 37.66 29.57 68.60 2.03 39.69 15 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 19 H -0.28 -10.55 7.11 99.48 0.71 -9.84 15 20 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 21 H 0.05 2.49 7.05 -2.39 -0.02 2.48 15 22 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.05 2.17 6.66 -2.38 -0.02 2.16 15 24 H 0.15 3.64 8.06 -2.91 -0.02 3.61 15 25 H 0.17 3.18 8.06 -2.91 -0.02 3.16 15 26 H 0.14 4.33 7.62 -2.91 -0.02 4.31 15 27 H 0.13 5.53 4.48 -2.91 -0.01 5.52 15 28 H 0.28 13.12 8.31 -92.71 -0.77 12.35 15 Total: -1.00 -57.06 255.27 4.59 -52.46 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.20 Total: 10.20 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.49 Total: -40.33 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.22 Total: -41.73 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.29 Total: 2.03 kcal Total: -57.06 4.59 -52.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396366517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.062 kcal (2) G-P(sol) polarization free energy of solvation -57.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds