Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35662 * 122.30570 * 2 1 4 4 C 1.41825 * 124.75798 * 0.02562 * 3 2 1 5 5 O 1.21392 * 120.00002 * 179.97438 * 4 3 2 6 6 S 1.75476 * 110.47943 * 179.53516 * 3 2 1 7 7 C 1.76037 * 91.66945 * 0.45952 * 6 3 2 8 8 C 1.39091 * 130.18276 * 179.43665 * 7 6 3 9 9 C 1.40304 * 120.01426 * 180.02562 * 8 7 6 10 10 C 1.40847 * 120.17314 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00309 * 330.12320 * 10 9 8 12 12 C 1.40157 * 119.99979 * 150.12680 * 10 9 8 13 13 N 1.30707 * 119.99954 * 161.76963 * 12 10 9 14 14 Si 1.86795 * 119.99680 * 341.76419 * 12 10 9 15 15 H 1.48501 * 109.47047 * 95.42175 * 14 12 10 16 16 H 1.48502 * 109.47151 * 215.41549 * 14 12 10 17 17 H 1.48497 * 109.47343 * 335.41678 * 14 12 10 18 18 C 1.41417 * 119.64618 * 359.97438 * 9 8 7 19 19 C 1.34981 * 120.42604 * 0.02564 * 18 9 8 20 20 C 1.39639 * 122.30344 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47626 * 269.98183 * 1 2 3 22 22 H 1.09001 * 109.46905 * 29.98120 * 1 2 3 23 23 H 1.09000 * 109.47328 * 149.97728 * 1 2 3 24 24 H 1.08000 * 120.00053 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.99192 * 359.97193 * 8 7 6 26 26 H 0.97005 * 119.99965 * 180.02562 * 13 12 10 27 27 H 1.08001 * 119.78484 * 180.02562 * 18 9 8 28 28 H 1.07990 * 119.56412 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2320 1.1466 0.0000 4 6 1.6793 2.4527 0.0005 5 8 2.4109 3.4214 0.0009 6 16 3.9494 0.7870 0.0133 7 6 3.6391 -0.9458 0.0046 8 6 4.5269 -2.0165 -0.0021 9 6 4.0396 -3.3321 -0.0089 10 6 4.9356 -4.4189 -0.0162 11 1 5.9043 -4.3170 -0.4828 12 6 4.5700 -5.6325 0.5819 13 7 5.2148 -6.7293 0.2819 14 14 3.1616 -5.6826 1.8079 15 1 1.9098 -6.0685 1.1082 16 1 3.4631 -6.6780 2.8678 17 1 2.9921 -4.3413 2.4222 18 6 2.6441 -3.5613 -0.0085 19 6 1.7810 -2.5235 -0.0020 20 6 2.2532 -1.1803 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 0.6075 2.5856 0.0005 25 1 5.5915 -1.8350 -0.0028 26 1 4.9615 -7.5693 0.6956 27 1 2.2666 -4.5731 -0.0133 28 1 0.7181 -2.7145 -0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396367722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = -12.629021 kcal Electronic energy + Delta-G solvation = -14656.436879 eV Core-core repulsion = 12149.003306 eV Total energy + Delta-G solvation = -2507.433573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.03352 -38.17699 -35.69898 -33.67074 -30.46422 -30.29880 -27.99048 -26.28630 -22.92693 -22.18404 -20.39632 -19.06790 -18.13560 -16.71969 -15.86598 -15.60940 -14.79450 -14.24305 -14.14236 -13.65671 -13.46906 -13.11928 -12.98647 -12.78703 -12.36667 -12.26040 -11.73913 -11.39355 -11.22243 -10.87290 -10.47976 -10.24517 -10.04124 -9.70545 -9.45867 -9.32251 -8.77405 -7.71524 -7.49509 -6.97332 -4.86460 0.86005 2.33306 2.39484 2.42139 2.80138 2.86746 2.94977 3.00643 3.47054 3.59516 4.09458 4.95151 4.97808 5.33146 5.45229 5.53823 5.73682 5.79118 5.98732 6.08761 6.27728 6.29697 6.50236 6.56164 6.68547 6.93135 7.21162 7.30580 7.39495 7.57252 7.79855 7.96842 8.16417 8.23988 9.48657 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041201 B = 0.006728 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.437879 B = 4160.480316 C = 4645.748888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.047 3.953 3 C -0.375 4.375 4 C 0.406 3.594 5 O -0.500 6.500 6 S 0.064 5.936 7 C -0.042 4.042 8 C -0.214 4.214 9 C 0.110 3.890 10 C -0.394 4.394 11 H 0.103 0.897 12 C 0.077 3.923 13 N -0.768 5.768 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.282 1.282 17 H -0.238 1.238 18 C -0.208 4.208 19 C -0.028 4.028 20 C -0.228 4.228 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.296 0.704 27 H 0.111 0.889 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 2.849 1.220 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.034 3.966 3 C -0.490 4.490 4 C 0.271 3.729 5 O -0.380 6.380 6 S 0.329 5.671 7 C -0.159 4.159 8 C -0.242 4.242 9 C 0.102 3.898 10 C -0.421 4.421 11 H 0.121 0.879 12 C -0.148 4.148 13 N -0.388 5.388 14 Si 0.740 3.260 15 H -0.188 1.188 16 H -0.208 1.208 17 H -0.161 1.161 18 C -0.226 4.226 19 C -0.048 4.048 20 C -0.232 4.232 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.150 4.079 1.227 7.481 hybrid contribution -1.727 -1.355 0.413 2.233 sum -7.876 2.725 1.641 8.494 Atomic orbital electron populations 1.20735 0.90846 1.02837 1.02516 1.19315 0.95532 0.91207 0.90564 1.23093 0.97464 0.98475 1.29934 1.21603 0.94127 0.85913 0.71218 1.90507 1.64985 1.42986 1.39503 1.83849 1.04273 0.98092 1.80897 1.22666 0.96532 0.96297 1.00361 1.20237 0.97092 0.89984 1.16881 1.17613 0.91608 0.92382 0.88162 1.19842 1.02880 0.92715 1.26644 0.87941 1.26473 0.97454 0.94186 0.96682 1.69610 1.36035 1.00196 1.32977 0.86236 0.79593 0.80669 0.79532 1.18805 1.20822 1.16116 1.20779 0.93996 0.97779 1.10067 1.20380 0.97973 0.90706 0.95751 1.17532 0.91689 0.92992 1.20975 0.90572 0.91394 0.90960 0.89392 0.87282 0.89249 0.87179 0.87654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.56 36.00 0.34 -1.06 15 2 C 0.05 0.84 5.90 -105.02 -0.62 0.22 15 3 C -0.37 -7.04 6.18 -39.13 -0.24 -7.28 15 4 C 0.41 6.91 10.89 32.10 0.35 7.25 15 5 O -0.50 -10.15 17.61 5.46 0.10 -10.05 15 6 S 0.06 1.31 22.93 -107.50 -2.46 -1.16 15 7 C -0.04 -0.93 6.46 -38.39 -0.25 -1.18 15 8 C -0.21 -4.82 9.81 -38.49 -0.38 -5.20 15 9 C 0.11 2.51 5.09 -106.92 -0.54 1.96 15 10 C -0.39 -9.32 9.55 -37.88 -0.36 -9.68 15 11 H 0.10 2.53 8.06 -52.48 -0.42 2.10 15 12 C 0.08 1.74 5.40 -17.31 -0.09 1.64 15 13 N -0.77 -17.60 13.92 55.56 0.77 -16.82 15 14 Si 0.92 17.80 24.51 -169.99 -4.17 13.64 15 15 H -0.26 -4.84 6.70 56.52 0.38 -4.46 15 16 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 17 H -0.24 -4.85 6.87 56.52 0.39 -4.47 15 18 C -0.21 -4.39 7.05 -39.53 -0.28 -4.67 15 19 C -0.03 -0.54 9.57 -39.15 -0.37 -0.91 15 20 C -0.23 -4.64 5.85 -106.90 -0.63 -5.27 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.07 0.71 6.85 -51.93 -0.36 0.36 15 23 H 0.07 0.85 7.28 -51.93 -0.38 0.47 15 24 H 0.09 1.11 6.86 -52.49 -0.36 0.75 15 25 H 0.11 2.36 8.06 -52.49 -0.42 1.94 15 26 H 0.30 6.03 8.29 -40.82 -0.34 5.69 15 27 H 0.11 2.22 4.71 -52.49 -0.25 1.97 15 28 H 0.11 1.69 7.35 -52.49 -0.39 1.30 15 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -26.34 256.58 -7.13 -33.48 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -2.17 Total: 1.22 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -3.07 Total: -24.17 kcal Atomic # 7 Polarization: -17.60 SS G_CDS: 0.77 Total: -16.82 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.10 Total: -10.05 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -4.17 Total: 13.64 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.46 Total: -1.16 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.34 -7.13 -33.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396367722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.848 kcal (2) G-P(sol) polarization free energy of solvation -26.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds