Wall clock time and date at job start Mon Mar 30 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35662 * 122.30570 * 2 1 4 4 C 1.41825 * 124.75798 * 0.02562 * 3 2 1 5 5 O 1.21392 * 120.00002 * 179.97438 * 4 3 2 6 6 S 1.75476 * 110.47943 * 179.53516 * 3 2 1 7 7 C 1.76037 * 91.66945 * 0.45952 * 6 3 2 8 8 C 1.39091 * 130.18276 * 179.43665 * 7 6 3 9 9 C 1.40304 * 120.01426 * 180.02562 * 8 7 6 10 10 C 1.40847 * 120.17314 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00309 * 330.12320 * 10 9 8 12 12 C 1.40157 * 119.99979 * 150.12680 * 10 9 8 13 13 N 1.30707 * 119.99954 * 161.76963 * 12 10 9 14 14 Si 1.86795 * 119.99680 * 341.76419 * 12 10 9 15 15 H 1.48501 * 109.47047 * 95.42175 * 14 12 10 16 16 H 1.48502 * 109.47151 * 215.41549 * 14 12 10 17 17 H 1.48497 * 109.47343 * 335.41678 * 14 12 10 18 18 C 1.41417 * 119.64618 * 359.97438 * 9 8 7 19 19 C 1.34981 * 120.42604 * 0.02564 * 18 9 8 20 20 C 1.39639 * 122.30344 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47626 * 269.98183 * 1 2 3 22 22 H 1.09001 * 109.46905 * 29.98120 * 1 2 3 23 23 H 1.09000 * 109.47328 * 149.97728 * 1 2 3 24 24 H 1.08000 * 120.00053 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.99192 * 359.97193 * 8 7 6 26 26 H 0.97005 * 119.99965 * 180.02562 * 13 12 10 27 27 H 1.08001 * 119.78484 * 180.02562 * 18 9 8 28 28 H 1.07990 * 119.56412 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2320 1.1466 0.0000 4 6 1.6793 2.4527 0.0005 5 8 2.4109 3.4214 0.0009 6 16 3.9494 0.7870 0.0133 7 6 3.6391 -0.9458 0.0046 8 6 4.5269 -2.0165 -0.0021 9 6 4.0396 -3.3321 -0.0089 10 6 4.9356 -4.4189 -0.0162 11 1 5.9043 -4.3170 -0.4828 12 6 4.5700 -5.6325 0.5819 13 7 5.2148 -6.7293 0.2819 14 14 3.1616 -5.6826 1.8079 15 1 1.9098 -6.0685 1.1082 16 1 3.4631 -6.6780 2.8678 17 1 2.9921 -4.3413 2.4222 18 6 2.6441 -3.5613 -0.0085 19 6 1.7810 -2.5235 -0.0020 20 6 2.2532 -1.1803 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8898 -0.5142 24 1 0.6075 2.5856 0.0005 25 1 5.5915 -1.8350 -0.0028 26 1 4.9615 -7.5693 0.6956 27 1 2.2666 -4.5731 -0.0133 28 1 0.7181 -2.7145 -0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396367722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:23 Heat of formation + Delta-G solvation = -27.305306 kcal Electronic energy + Delta-G solvation = -14657.073291 eV Core-core repulsion = 12149.003306 eV Total energy + Delta-G solvation = -2508.069985 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57408 -39.69455 -37.24646 -35.28310 -32.02573 -31.91504 -29.21598 -27.87707 -24.45350 -23.79081 -21.94934 -20.54402 -19.75433 -18.26975 -17.40597 -17.17221 -16.34750 -15.70541 -15.58644 -15.25634 -14.99580 -14.59990 -14.44686 -14.21369 -13.80529 -13.64539 -13.09808 -12.79547 -12.74596 -12.45102 -12.04532 -11.81331 -11.61619 -11.31865 -11.03020 -10.74858 -10.36666 -9.37422 -9.14084 -8.57971 -6.63957 -0.60765 0.65436 0.77511 0.88638 1.24537 1.31222 1.42575 1.47718 1.99180 2.06920 2.48665 3.26972 3.68248 3.99289 4.11349 4.32734 4.38183 4.54059 4.66773 4.76057 4.89441 4.91838 4.98050 5.14454 5.28828 5.30349 5.59412 5.67019 5.75791 5.93868 6.07190 6.47760 6.52529 6.62203 7.91174 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041201 B = 0.006728 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.437879 B = 4160.480316 C = 4645.748888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.060 3.940 3 C -0.376 4.376 4 C 0.415 3.585 5 O -0.534 6.534 6 S 0.028 5.972 7 C -0.060 4.060 8 C -0.241 4.241 9 C 0.105 3.895 10 C -0.443 4.443 11 H 0.066 0.934 12 C 0.049 3.951 13 N -0.809 5.809 14 Si 0.966 3.034 15 H -0.236 1.236 16 H -0.271 1.271 17 H -0.253 1.253 18 C -0.224 4.224 19 C -0.016 4.016 20 C -0.235 4.235 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.156 0.844 25 H 0.096 0.904 26 H 0.306 0.694 27 H 0.122 0.878 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 4.342 1.762 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.047 3.953 3 C -0.490 4.490 4 C 0.281 3.719 5 O -0.415 6.415 6 S 0.293 5.707 7 C -0.175 4.175 8 C -0.268 4.268 9 C 0.099 3.901 10 C -0.470 4.470 11 H 0.084 0.916 12 C -0.171 4.171 13 N -0.432 5.432 14 Si 0.786 3.214 15 H -0.160 1.160 16 H -0.197 1.197 17 H -0.177 1.177 18 C -0.243 4.243 19 C -0.036 4.036 20 C -0.240 4.240 21 H 0.119 0.881 22 H 0.116 0.884 23 H 0.106 0.894 24 H 0.172 0.828 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.854 5.555 1.754 12.318 hybrid contribution -0.348 -1.406 0.190 1.461 sum -11.201 4.148 1.944 12.102 Atomic orbital electron populations 1.20971 0.86108 1.05239 1.04720 1.19772 0.98547 0.89189 0.87798 1.23660 0.95641 1.00410 1.29338 1.22436 0.96419 0.84051 0.69003 1.90522 1.66446 1.43838 1.40670 1.84045 1.07675 0.97889 1.81095 1.22891 0.97691 0.96420 1.00546 1.20297 0.96991 0.90883 1.18652 1.17735 0.92872 0.91862 0.87666 1.19711 1.02357 0.94654 1.30299 0.91570 1.27093 0.99403 0.93270 0.97365 1.69620 1.37978 1.00904 1.34699 0.85496 0.78096 0.79925 0.77836 1.16045 1.19716 1.17688 1.20927 0.93093 0.99162 1.11085 1.20812 1.00088 0.89478 0.93244 1.18062 0.91154 0.94747 1.20010 0.88081 0.88354 0.89419 0.82793 0.88608 0.88254 0.86024 0.82889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.56 71.23 0.68 -1.32 15 2 C 0.06 1.84 5.90 -20.12 -0.12 1.72 15 3 C -0.38 -12.73 6.18 22.56 0.14 -12.59 15 4 C 0.41 12.03 10.89 68.71 0.75 12.78 15 5 O -0.53 -19.99 17.61 -3.38 -0.06 -20.04 15 6 S 0.03 1.15 22.93 -56.49 -1.30 -0.15 15 7 C -0.06 -2.61 6.46 23.04 0.15 -2.46 15 8 C -0.24 -11.45 9.81 22.98 0.23 -11.23 15 9 C 0.11 5.01 5.09 -21.36 -0.11 4.90 15 10 C -0.44 -22.60 9.55 23.37 0.22 -22.38 15 11 H 0.07 3.68 8.06 -2.91 -0.02 3.65 15 12 C 0.05 2.33 5.40 85.33 0.46 2.79 15 13 N -0.81 -38.99 13.92 21.86 0.30 -38.69 15 14 Si 0.97 36.28 24.51 68.60 1.68 37.96 15 15 H -0.24 -7.83 6.70 99.48 0.67 -7.17 15 16 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 17 H -0.25 -10.01 6.87 99.48 0.68 -9.33 15 18 C -0.22 -9.20 7.05 22.30 0.16 -9.05 15 19 C -0.02 -0.58 9.57 22.55 0.22 -0.36 15 20 C -0.23 -8.90 5.85 -21.34 -0.12 -9.02 15 21 H 0.10 1.45 8.14 -2.39 -0.02 1.44 15 22 H 0.10 1.22 6.85 -2.39 -0.02 1.21 15 23 H 0.09 1.39 7.28 -2.39 -0.02 1.37 15 24 H 0.16 2.64 6.86 -2.91 -0.02 2.62 15 25 H 0.10 4.60 8.06 -2.91 -0.02 4.58 15 26 H 0.31 12.90 8.29 -92.70 -0.77 12.13 15 27 H 0.12 4.66 4.71 -2.91 -0.01 4.65 15 28 H 0.15 3.93 7.35 -2.92 -0.02 3.91 15 Total: -1.00 -61.39 256.58 4.41 -56.97 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.13 Total: 10.16 kcal Atomic # 6 Polarization: -48.86 SS G_CDS: 2.65 Total: -46.22 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.30 Total: -38.69 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 1.68 Total: 37.96 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.30 Total: -0.15 kcal Total: -61.39 4.41 -56.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396367722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.668 kcal (2) G-P(sol) polarization free energy of solvation -61.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds