Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39961 * 120.02297 * 2 1 4 4 C 1.46684 * 129.51110 * 0.58283 * 3 2 1 5 5 C 1.41575 * 123.19167 * 359.43402 * 4 3 2 6 6 O 1.21421 * 119.99547 * 186.37496 * 5 4 3 7 7 C 1.35345 * 113.60803 * 179.63812 * 4 3 2 8 8 S 1.69956 * 112.18513 * 359.79114 * 7 4 3 9 9 C 1.39810 * 119.38811 * 179.79292 * 3 2 1 10 10 C 1.40508 * 119.97965 * 0.46911 * 9 3 2 11 11 C 1.35722 * 120.82862 * 359.78405 * 10 9 3 12 12 C 1.40086 * 120.02368 * 180.28544 * 2 1 3 13 13 C 1.41235 * 120.12809 * 359.94661 * 12 2 1 14 14 H 1.07995 * 120.00548 * 333.30613 * 13 12 2 15 15 C 1.39902 * 119.99656 * 153.30131 * 13 12 2 16 16 N 1.30862 * 120.00380 * 346.19397 * 15 13 12 17 17 Si 1.86803 * 119.99942 * 166.18983 * 15 13 12 18 18 H 1.48505 * 109.46917 * 60.00212 * 17 15 13 19 19 H 1.48501 * 109.47392 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47325 * 300.00301 * 17 15 13 21 21 H 1.08999 * 109.46996 * 277.77538 * 1 2 3 22 22 H 1.09008 * 109.47052 * 37.77487 * 1 2 3 23 23 H 1.09000 * 109.47319 * 157.77329 * 1 2 3 24 24 H 1.07997 * 120.00354 * 6.36817 * 5 4 3 25 25 H 1.08003 * 123.90434 * 179.79362 * 7 4 3 26 26 H 1.08000 * 119.58113 * 179.76547 * 10 9 3 27 27 H 1.08004 * 119.94557 * 180.02562 * 11 10 9 28 28 H 0.97004 * 120.00314 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2118 0.0000 4 6 1.6944 2.5860 0.0115 5 6 0.3135 2.8980 0.0136 6 8 -0.0483 4.0520 -0.0935 7 6 2.6668 3.5274 0.0156 8 16 4.2225 2.8432 0.0118 9 6 3.6053 1.1963 0.0044 10 6 4.2939 -0.0284 -0.0012 11 6 3.6188 -1.2059 -0.0065 12 6 2.2079 -1.2129 -0.0060 13 6 1.5050 -2.4379 -0.0110 14 1 0.5118 -2.4923 0.4097 15 6 2.0953 -3.5808 -0.5610 16 7 3.1663 -3.4707 -1.3048 17 14 1.3546 -5.2642 -0.2336 18 1 -0.0395 -5.2994 -0.7441 19 1 2.1613 -6.3027 -0.9236 20 1 1.3535 -5.5288 1.2276 21 1 -0.3633 0.1390 1.0182 22 1 -0.3633 0.8123 -0.6296 23 1 -0.3634 -0.9513 -0.3887 24 1 -0.4181 2.1094 0.1102 25 1 2.4762 4.5905 0.0207 26 1 5.3739 -0.0329 -0.0016 27 1 4.1626 -2.1390 -0.0103 28 1 3.5754 -4.2631 -1.6865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396367834.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = -15.427071 kcal Electronic energy + Delta-G solvation = -14926.455451 eV Core-core repulsion = 12418.900546 eV Total energy + Delta-G solvation = -2507.554906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80180 -39.40972 -36.51659 -34.64624 -33.49987 -30.48344 -28.33669 -26.76344 -26.60806 -22.92197 -22.08326 -20.80689 -19.03032 -18.04827 -17.22438 -16.97988 -16.66699 -15.63280 -15.48809 -15.26322 -14.96631 -14.37158 -14.03753 -13.63284 -13.38271 -13.29606 -13.09979 -13.02214 -12.72850 -12.36311 -11.99785 -11.71670 -11.53298 -11.13114 -11.02467 -10.60075 -9.97143 -9.20812 -8.73895 -8.41590 -6.33691 -0.41967 0.70767 0.77140 0.97150 1.18737 1.43045 1.50709 1.54068 2.13867 2.21600 2.68420 3.59882 3.72930 3.83948 4.20430 4.44000 4.61260 4.67193 4.82159 4.92858 4.98876 5.06149 5.16625 5.29313 5.36753 5.69769 5.75168 5.80758 6.04691 6.25386 6.52434 6.58056 6.90168 6.92321 8.29342 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031461 B = 0.007395 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.787271 B = 3785.326999 C = 4593.203003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.211 4.211 3 C -0.019 4.019 4 C -0.234 4.234 5 C 0.392 3.608 6 O -0.515 6.515 7 C -0.152 4.152 8 S 0.196 5.804 9 C -0.283 4.283 10 C -0.080 4.080 11 C -0.144 4.144 12 C 0.094 3.906 13 C -0.474 4.474 14 H 0.090 0.910 15 C 0.037 3.963 16 N -0.822 5.822 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.260 1.260 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.130 0.870 25 H 0.186 0.814 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.159 3.383 2.049 3.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.216 4.216 3 C -0.024 4.024 4 C -0.252 4.252 5 C 0.256 3.744 6 O -0.396 6.396 7 C -0.289 4.289 8 S 0.463 5.537 9 C -0.398 4.398 10 C -0.102 4.102 11 C -0.165 4.165 12 C 0.091 3.909 13 C -0.502 4.502 14 H 0.108 0.892 15 C -0.179 4.179 16 N -0.448 5.448 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.184 1.184 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.145 0.855 25 H 0.203 0.797 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.628 4.479 1.844 5.109 hybrid contribution -1.280 -1.515 -0.091 1.986 sum 0.347 2.964 1.753 3.460 Atomic orbital electron populations 1.20699 0.91309 1.01876 1.00861 1.19703 0.95881 0.90261 1.15727 1.18711 0.91943 0.91785 0.99935 1.19941 0.97701 0.92259 1.15291 1.23031 0.90658 0.91325 0.69402 1.90463 1.84228 1.25562 1.39319 1.25717 0.98689 1.04650 0.99892 1.81940 1.03793 0.94889 1.73078 1.22482 0.96605 0.97638 1.23028 1.20024 0.98403 0.90341 1.01435 1.21138 0.95131 0.96703 1.03490 1.17714 0.92162 0.92737 0.88277 1.19846 1.02932 0.93117 1.34342 0.89218 1.26774 0.94459 1.04849 0.91828 1.69839 1.18689 1.33537 1.22691 0.85235 0.79244 0.75586 0.79657 1.18261 1.19630 1.18416 0.91958 0.91777 0.91991 0.85471 0.79730 0.86689 0.86527 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.42 8.10 71.23 0.58 -2.84 15 2 C -0.21 -9.60 5.99 -19.00 -0.11 -9.72 15 3 C -0.02 -0.81 5.98 -20.27 -0.12 -0.93 15 4 C -0.23 -8.84 5.82 -20.92 -0.12 -8.96 15 5 C 0.39 13.77 10.42 68.64 0.72 14.49 15 6 O -0.51 -19.70 17.37 -3.47 -0.06 -19.76 15 7 C -0.15 -5.04 10.31 67.15 0.69 -4.35 15 8 S 0.20 6.30 22.97 -56.49 -1.30 5.01 15 9 C -0.28 -11.92 6.48 23.20 0.15 -11.77 15 10 C -0.08 -3.54 9.99 22.24 0.22 -3.32 15 11 C -0.14 -7.02 8.59 22.39 0.19 -6.83 15 12 C 0.09 4.70 5.55 -21.39 -0.12 4.58 15 13 C -0.47 -22.99 8.09 23.41 0.19 -22.80 15 14 H 0.09 4.11 6.70 -2.91 -0.02 4.09 15 15 C 0.04 1.69 5.20 85.24 0.44 2.13 15 16 N -0.82 -39.69 10.86 21.82 0.24 -39.46 15 17 Si 0.98 35.05 29.58 68.60 2.03 37.08 15 18 H -0.26 -8.95 7.11 99.48 0.71 -8.25 15 19 H -0.27 -9.34 7.11 99.48 0.71 -8.64 15 20 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 21 H 0.06 2.08 8.11 -2.39 -0.02 2.07 15 22 H 0.06 2.13 5.42 -2.38 -0.01 2.12 15 23 H 0.06 2.38 6.34 -2.39 -0.02 2.36 15 24 H 0.13 3.95 4.48 -2.91 -0.01 3.93 15 25 H 0.19 5.25 7.91 -2.91 -0.02 5.23 15 26 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 27 H 0.12 5.88 6.16 -2.91 -0.02 5.86 15 28 H 0.29 12.74 8.30 -92.71 -0.77 11.98 15 Total: -1.00 -55.49 254.09 4.82 -50.67 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.21 Total: 16.78 kcal Atomic # 6 Polarization: -53.02 SS G_CDS: 2.71 Total: -50.32 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.24 Total: -39.46 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.76 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.30 Total: 5.01 kcal Total: -55.49 4.82 -50.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396367834.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.244 kcal (2) G-P(sol) polarization free energy of solvation -55.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds