Wall clock time and date at job start Mon Mar 30 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32220 * 122.07833 * 2 1 4 4 S 1.75447 * 110.85993 * 179.97438 * 3 2 1 5 5 C 1.76244 * 91.59040 * 359.97438 * 4 3 2 6 6 C 1.40249 * 130.03436 * 180.02562 * 5 4 3 7 7 C 1.35690 * 121.99922 * 180.02562 * 6 5 4 8 8 C 1.41077 * 120.26771 * 359.97438 * 7 6 5 9 9 C 1.40481 * 120.46233 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99539 * 215.36767 * 9 8 7 11 11 C 1.40427 * 119.99901 * 35.37338 * 9 8 7 12 12 N 1.30552 * 119.99419 * 190.90200 * 11 9 8 13 13 Si 1.86794 * 120.00301 * 10.90360 * 11 9 8 14 14 H 1.48501 * 109.47072 * 267.29527 * 13 11 9 15 15 H 1.48498 * 109.47210 * 27.29705 * 13 11 9 16 16 H 1.48502 * 109.47002 * 147.29766 * 13 11 9 17 17 C 1.46164 * 119.06998 * 0.25292 * 8 7 6 18 18 C 1.41604 * 120.46009 * 179.72612 * 17 8 7 19 19 O 1.21437 * 120.00314 * 354.58409 * 18 17 8 20 20 C 1.40161 * 109.13992 * 0.02562 * 5 4 3 21 21 H 1.09007 * 109.47090 * 260.92042 * 1 2 3 22 22 H 1.08999 * 109.47045 * 20.91714 * 1 2 3 23 23 H 1.08995 * 109.46892 * 140.92680 * 1 2 3 24 24 H 1.08001 * 124.56952 * 359.97438 * 3 2 1 25 25 H 1.08008 * 118.99775 * 359.97438 * 6 5 4 26 26 H 1.08004 * 119.87083 * 180.02562 * 7 6 5 27 27 H 0.97001 * 120.00067 * 179.97438 * 12 11 9 28 28 H 1.07995 * 119.99789 * 174.58246 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1203 0.0000 4 16 3.9302 0.7790 0.0007 5 6 3.6354 -0.9586 0.0018 6 6 4.5432 -2.0276 0.0033 7 6 4.1315 -3.3206 0.0034 8 6 2.7548 -3.6284 0.0027 9 6 2.3240 -4.9656 0.0023 10 1 1.4327 -5.2455 -0.5396 11 6 3.0521 -5.9380 0.7066 12 7 2.7830 -7.2043 0.5378 13 14 4.4057 -5.4198 1.8849 14 1 5.7065 -5.4046 1.1687 15 1 4.1130 -4.0614 2.4085 16 1 4.4738 -6.3816 3.0144 17 6 1.7829 -2.5367 -0.0040 18 6 0.3939 -2.8121 -0.0108 19 8 0.0024 -3.9573 -0.1104 20 6 2.2531 -1.1902 0.0010 21 1 -0.3634 -0.1622 1.0149 22 1 -0.3633 0.9599 -0.3669 23 1 -0.3633 -0.7978 -0.6477 24 1 1.7811 2.1119 -0.0004 25 1 5.6022 -1.8153 0.0035 26 1 4.8607 -4.1173 0.0050 27 1 3.2861 -7.8761 1.0240 28 1 -0.3172 -2.0037 0.0727 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396369124.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:59 Heat of formation + Delta-G solvation = -6.040599 kcal Electronic energy + Delta-G solvation = -15191.113766 eV Core-core repulsion = 12683.965888 eV Total energy + Delta-G solvation = -2507.147878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76785 -38.74079 -37.24991 -35.39151 -32.39447 -31.12894 -29.75000 -27.05507 -24.87507 -23.71029 -21.74514 -20.85407 -19.02944 -18.35084 -17.40442 -17.00950 -16.45040 -15.40020 -15.32161 -15.17553 -14.92231 -14.83906 -14.32803 -14.03764 -13.70958 -13.33097 -13.16603 -12.85095 -12.73440 -12.23472 -12.01224 -11.95971 -11.62662 -11.51627 -11.13798 -10.16442 -9.79345 -9.31538 -9.04849 -8.46675 -6.67641 -0.39070 0.34317 0.89601 1.16716 1.24784 1.31727 1.37575 1.54071 1.90592 2.02022 2.54281 3.33928 3.87988 3.97246 4.06017 4.23808 4.50830 4.57468 4.69617 4.83790 4.92066 4.96293 5.01064 5.17005 5.24682 5.46004 5.47963 5.73074 5.78254 5.99158 6.17057 6.53232 6.58330 7.27617 7.91804 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.009699 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.148092 B = 2886.138990 C = 3749.950913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.171 4.171 4 S 0.077 5.923 5 C -0.268 4.268 6 C -0.024 4.024 7 C -0.209 4.209 8 C 0.099 3.901 9 C -0.408 4.408 10 H 0.082 0.918 11 C 0.040 3.960 12 N -0.806 5.806 13 Si 0.965 3.035 14 H -0.237 1.237 15 H -0.253 1.253 16 H -0.267 1.267 17 C -0.329 4.329 18 C 0.336 3.664 19 O -0.543 6.543 20 C 0.019 3.981 21 H 0.078 0.922 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.200 0.800 25 H 0.136 0.864 26 H 0.120 0.880 27 H 0.306 0.694 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 13.982 1.721 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.140 4.140 3 C -0.306 4.306 4 S 0.341 5.659 5 C -0.382 4.382 6 C -0.045 4.045 7 C -0.229 4.229 8 C 0.094 3.906 9 C -0.434 4.434 10 H 0.100 0.900 11 C -0.181 4.181 12 N -0.429 5.429 13 Si 0.786 3.214 14 H -0.161 1.161 15 H -0.177 1.177 16 H -0.193 1.193 17 C -0.335 4.335 18 C 0.208 3.792 19 O -0.428 6.428 20 C 0.010 3.990 21 H 0.097 0.903 22 H 0.115 0.885 23 H 0.087 0.913 24 H 0.217 0.783 25 H 0.154 0.846 26 H 0.138 0.862 27 H 0.117 0.883 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.129 14.074 1.682 14.764 hybrid contribution -0.792 -1.460 0.214 1.675 sum 3.338 12.614 1.896 13.185 Atomic orbital electron populations 1.20964 0.88534 1.03888 1.02968 1.18909 0.98552 0.90755 1.05739 1.25345 0.95532 1.02655 1.07019 1.83371 1.06119 0.96969 1.79446 1.22460 0.96409 0.97657 1.21718 1.20102 0.98707 0.90648 0.95059 1.20972 0.95190 0.96466 1.10314 1.18889 0.91719 0.92448 0.87523 1.20197 1.08835 0.91212 1.23109 0.89983 1.27329 0.98791 0.93921 0.98013 1.69533 1.36459 1.02760 1.34173 0.85526 0.78187 0.79834 0.77877 1.16065 1.17706 1.19285 1.20453 0.95797 0.91113 1.26099 1.23235 0.91246 0.91489 0.73181 1.90460 1.82980 1.27182 1.42227 1.18388 0.92227 0.92928 0.95443 0.90314 0.88505 0.91302 0.78266 0.84642 0.86229 0.88258 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 8.46 71.24 0.60 -2.00 15 2 C -0.13 -4.00 5.81 -20.35 -0.12 -4.12 15 3 C -0.17 -4.47 10.76 66.79 0.72 -3.76 15 4 S 0.08 2.24 23.29 -56.49 -1.32 0.93 15 5 C -0.27 -10.47 6.50 23.23 0.15 -10.32 15 6 C -0.02 -0.95 9.91 22.17 0.22 -0.73 15 7 C -0.21 -9.51 6.93 22.38 0.16 -9.35 15 8 C 0.10 5.19 5.18 -19.98 -0.10 5.09 15 9 C -0.41 -23.43 8.38 23.35 0.20 -23.23 15 10 H 0.08 5.37 5.98 -2.91 -0.02 5.36 15 11 C 0.04 2.08 5.48 85.42 0.47 2.55 15 12 N -0.81 -42.93 13.91 21.91 0.30 -42.63 15 13 Si 0.97 40.23 24.49 68.60 1.68 41.91 15 14 H -0.24 -8.78 6.74 99.48 0.67 -8.11 15 15 H -0.25 -11.05 6.72 99.48 0.67 -10.38 15 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 17 C -0.33 -15.98 5.98 -19.30 -0.12 -16.09 15 18 C 0.34 15.86 10.37 68.65 0.71 16.57 15 19 O -0.54 -30.65 14.34 -3.52 -0.05 -30.70 15 20 C 0.02 0.77 5.86 -21.17 -0.12 0.65 15 21 H 0.08 1.82 8.06 -2.38 -0.02 1.80 15 22 H 0.10 1.70 8.06 -2.39 -0.02 1.68 15 23 H 0.07 1.88 5.43 -2.39 -0.01 1.86 15 24 H 0.20 3.43 8.06 -2.91 -0.02 3.41 15 25 H 0.14 4.38 8.06 -2.91 -0.02 4.35 15 26 H 0.12 5.13 4.90 -2.91 -0.01 5.11 15 27 H 0.31 14.21 8.29 -92.71 -0.77 13.44 15 28 H 0.12 4.48 3.87 -2.91 -0.01 4.47 15 Total: -1.00 -66.39 246.92 4.52 -61.88 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 1.14 Total: 13.37 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 2.76 Total: -44.76 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.30 Total: -42.63 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.05 Total: -30.70 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.68 Total: 41.91 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.32 Total: 0.93 kcal Total: -66.39 4.52 -61.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396369124.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.835 kcal (2) G-P(sol) polarization free energy of solvation -66.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds