Wall clock time and date at job start Mon Mar 30 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32224 * 124.56793 * 2 1 4 4 C 1.40472 * 115.84021 * 180.02562 * 3 2 1 5 5 C 1.40185 * 112.56355 * 359.97438 * 4 3 2 6 6 C 1.40210 * 120.82941 * 179.97438 * 5 4 3 7 7 C 1.35741 * 121.99586 * 0.02562 * 6 5 4 8 8 C 1.41031 * 120.26416 * 359.95472 * 7 6 5 9 9 C 1.40484 * 120.46484 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00403 * 153.69369 * 9 8 7 11 11 C 1.40430 * 119.99275 * 333.69734 * 9 8 7 12 12 N 1.30547 * 120.00318 * 344.01009 * 11 9 8 13 13 Si 1.86803 * 119.99787 * 164.01581 * 11 9 8 14 14 H 1.48505 * 109.46901 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47234 * 119.99433 * 13 11 9 16 16 H 1.48501 * 109.46904 * 239.99908 * 13 11 9 17 17 C 1.42595 * 128.67342 * 179.97438 * 4 3 2 18 18 C 1.41596 * 120.46846 * 0.02562 * 17 4 3 19 19 O 1.21441 * 119.99758 * 359.97438 * 18 17 4 20 20 S 1.75447 * 124.56805 * 180.28543 * 2 1 3 21 21 H 1.09006 * 109.47048 * 89.99962 * 1 2 3 22 22 H 1.08997 * 109.47482 * 210.00217 * 1 2 3 23 23 H 1.09001 * 109.47319 * 330.00338 * 1 2 3 24 24 H 1.07997 * 122.07697 * 0.03660 * 3 2 1 25 25 H 1.08003 * 119.00466 * 179.97438 * 6 5 4 26 26 H 1.07997 * 119.86285 * 179.97438 * 7 6 5 27 27 H 0.97001 * 120.00140 * 180.02562 * 12 11 9 28 28 H 1.07995 * 120.00516 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2572 1.0888 0.0000 4 6 3.6456 0.8756 -0.0006 5 6 3.9809 -0.4855 -0.0005 6 6 5.3217 -0.8953 -0.0015 7 6 6.3460 -0.0046 -0.0021 8 6 6.0831 1.3810 -0.0027 9 6 7.1399 2.3066 -0.0039 10 1 6.9935 3.2929 -0.4188 11 6 8.3867 1.9491 0.5344 12 7 8.4885 0.9005 1.3053 13 14 9.8996 2.9742 0.1474 14 1 9.5198 4.1006 -0.7429 15 1 10.4701 3.5106 1.4091 16 1 10.9115 2.1261 -0.5323 17 6 4.6953 1.8408 -0.0012 18 6 4.3977 3.2252 -0.0008 19 8 3.2419 3.5978 -0.0004 20 16 2.5024 -1.4447 -0.0072 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.8290 2.0803 0.0006 25 1 5.5465 -1.9517 -0.0010 26 1 7.3664 -0.3584 -0.0025 27 1 9.3497 0.6539 1.6774 28 1 5.1986 3.9497 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396369228.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:01 Heat of formation + Delta-G solvation = -12.043448 kcal Electronic energy + Delta-G solvation = -14830.882474 eV Core-core repulsion = 12323.474293 eV Total energy + Delta-G solvation = -2507.408181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.76601 -36.70851 -35.57475 -33.62774 -30.58737 -30.24192 -26.91034 -25.37075 -23.09562 -22.05656 -19.69203 -19.20007 -17.38374 -16.60232 -15.60697 -15.13877 -14.50331 -13.86148 -13.56001 -13.49414 -13.35392 -12.88374 -12.65047 -12.36488 -11.92730 -11.84567 -11.64346 -11.40374 -11.15501 -10.84841 -10.33109 -10.27828 -9.98862 -9.82826 -9.46717 -8.41606 -8.19304 -7.44920 -7.39390 -6.83632 -4.87289 1.42670 2.18527 2.47986 2.79786 2.82240 2.88082 2.94074 3.38446 3.54355 3.82750 4.26602 5.31383 5.38562 5.66222 5.80925 5.83995 5.99352 6.11452 6.27865 6.45660 6.55872 6.64864 6.71862 6.92715 7.08499 7.21604 7.34640 7.52710 7.61444 7.77746 8.06045 8.22826 8.42246 8.98736 9.54892 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.035088 B = 0.007182 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.791888 B = 3897.658447 C = 4613.537345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.178 4.178 3 C -0.120 4.120 4 C 0.032 3.968 5 C -0.235 4.235 6 C -0.051 4.051 7 C -0.132 4.132 8 C 0.155 3.845 9 C -0.416 4.416 10 H 0.097 0.903 11 C 0.072 3.928 12 N -0.754 5.754 13 Si 0.921 3.079 14 H -0.252 1.252 15 H -0.267 1.267 16 H -0.266 1.266 17 C -0.322 4.322 18 C 0.383 3.617 19 O -0.541 6.541 20 S 0.011 5.989 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.294 0.706 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -1.988 -1.363 2.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.293 4.293 3 C -0.151 4.151 4 C 0.024 3.976 5 C -0.350 4.350 6 C -0.073 4.073 7 C -0.153 4.153 8 C 0.150 3.850 9 C -0.442 4.442 10 H 0.115 0.885 11 C -0.153 4.153 12 N -0.376 5.376 13 Si 0.743 3.257 14 H -0.176 1.176 15 H -0.192 1.192 16 H -0.190 1.190 17 C -0.328 4.328 18 C 0.256 3.744 19 O -0.427 6.427 20 S 0.273 5.727 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.167 0.833 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.106 0.894 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.213 -3.500 -1.213 4.315 hybrid contribution 1.293 1.563 0.022 2.029 sum -0.920 -1.937 -1.191 2.453 Atomic orbital electron populations 1.20269 0.88847 1.02335 1.01973 1.23834 0.99000 0.95751 1.10731 1.20341 0.92849 0.99576 1.02333 1.18014 0.92094 0.91694 0.95785 1.22034 0.95781 0.95069 1.22106 1.19844 0.89998 0.98222 0.99196 1.21083 0.98088 0.92934 1.03158 1.18642 0.90355 0.92274 0.83723 1.19973 0.93712 1.00670 1.29886 0.88498 1.26301 1.01408 0.95260 0.92314 1.69669 1.28155 1.21513 1.18255 0.86012 0.79238 0.80527 0.79874 1.17553 1.19224 1.19029 1.20078 0.91641 0.93936 1.27173 1.21874 0.90414 0.90739 0.71412 1.90318 1.24905 1.83819 1.43691 1.83340 0.97811 1.09922 1.81675 0.91464 0.91972 0.91060 0.83305 0.88494 0.85240 0.89442 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.33 36.00 0.37 -0.74 15 2 C -0.18 -3.47 6.41 -36.24 -0.23 -3.70 15 3 C -0.12 -2.70 9.17 -40.67 -0.37 -3.07 15 4 C 0.03 0.78 5.85 -106.65 -0.62 0.15 15 5 C -0.24 -5.45 6.50 -38.11 -0.25 -5.70 15 6 C -0.05 -1.14 9.91 -39.74 -0.39 -1.53 15 7 C -0.13 -3.09 8.60 -39.42 -0.34 -3.43 15 8 C 0.15 3.77 5.71 -104.80 -0.60 3.17 15 9 C -0.42 -9.49 8.44 -37.91 -0.32 -9.81 15 10 H 0.10 2.07 6.65 -52.49 -0.35 1.72 15 11 C 0.07 1.51 5.17 -17.27 -0.09 1.43 15 12 N -0.75 -16.48 10.96 55.57 0.61 -15.87 15 13 Si 0.92 15.65 29.59 -169.99 -5.03 10.62 15 14 H -0.25 -4.27 7.11 56.52 0.40 -3.87 15 15 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 16 H -0.27 -4.44 7.11 56.52 0.40 -4.04 15 17 C -0.32 -8.00 5.98 -103.74 -0.62 -8.62 15 18 C 0.38 9.05 10.82 32.01 0.35 9.39 15 19 O -0.54 -13.53 14.92 5.42 0.08 -13.45 15 20 S 0.01 0.21 23.27 -107.50 -2.50 -2.29 15 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 24 H 0.15 3.40 6.05 -52.49 -0.32 3.08 15 25 H 0.10 1.93 8.06 -52.48 -0.42 1.50 15 26 H 0.13 2.97 6.23 -52.49 -0.33 2.64 15 27 H 0.29 5.68 8.29 -40.82 -0.34 5.34 15 28 H 0.07 1.49 6.55 -52.49 -0.34 1.14 15 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -26.50 259.20 -8.22 -34.71 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.16 Total: 4.81 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -3.12 Total: -22.45 kcal Atomic # 7 Polarization: -16.48 SS G_CDS: 0.61 Total: -15.87 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.62 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.50 Total: -2.29 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.50 -8.22 -34.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396369228.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.667 kcal (2) G-P(sol) polarization free energy of solvation -26.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds